Wall clock time and date at job start Tue Mar 31 2020 20:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48503 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46716 * 300.00009 * 3 2 1 6 6 H 1.48496 * 109.47278 * 59.99832 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 64.99720 * 12 11 10 14 14 C 1.42899 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.47113 * 180.02562 * 14 13 12 16 16 O 1.45193 * 109.46913 * 64.99838 * 15 14 13 17 17 C 1.34229 * 116.99914 * 180.02562 * 16 15 14 18 18 O 1.20828 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00141 * 180.02562 * 17 16 15 20 20 H 1.08996 * 112.83161 * 309.66579 * 19 17 16 21 21 C 1.53517 * 113.58901 * 178.55343 * 19 17 16 22 22 C 1.51617 * 87.25430 * 245.40602 * 21 19 17 23 23 C 1.38387 * 147.49326 * 180.02562 * 22 21 19 24 24 C 1.38053 * 120.36111 * 179.97438 * 23 22 21 25 25 C 1.38468 * 119.92856 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.04964 * 180.02562 * 25 24 23 27 27 C 1.38320 * 119.90284 * 359.97438 * 25 24 23 28 28 C 1.38219 * 120.38289 * 359.95575 * 27 25 24 29 29 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 31 31 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 32 32 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 33 33 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 34 34 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 35 35 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 36 36 H 1.09007 * 109.47484 * 299.99646 * 14 13 12 37 37 H 1.09004 * 109.47459 * 59.99983 * 14 13 12 38 38 H 1.09000 * 109.47262 * 184.99920 * 15 14 13 39 39 H 1.09002 * 109.46484 * 304.99927 * 15 14 13 40 40 H 1.08999 * 113.58334 * 0.02562 * 21 19 17 41 41 H 1.09007 * 113.58673 * 130.81429 * 21 19 17 42 42 H 1.08007 * 119.82022 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.03837 * 179.97438 * 24 23 22 44 44 H 1.07992 * 119.84905 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 8 3.3872 -5.8890 1.2241 14 6 4.4295 -6.8611 1.3267 15 6 5.1496 -6.6973 2.6667 16 8 4.2319 -7.0023 3.7498 17 6 4.7109 -6.9051 4.9999 18 8 5.8591 -6.5766 5.1831 19 6 3.8169 -7.2069 6.1749 20 1 2.8652 -6.6775 6.1292 21 6 4.5237 -7.0838 7.5322 22 6 4.3155 -8.5769 7.6938 23 6 4.4928 -9.7016 8.4804 24 6 4.0378 -10.9322 8.0511 25 6 3.4007 -11.0445 6.8268 26 9 2.9540 -12.2476 6.4045 27 6 3.2214 -9.9230 6.0373 28 6 3.6738 -8.6885 6.4635 29 1 -0.4851 0.8400 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 0.9451 -4.9831 -0.8877 33 1 0.9444 -4.9818 0.8922 34 1 2.1818 -6.9376 -0.0860 35 1 3.3214 -5.7962 -0.8388 36 1 4.0008 -7.8615 1.2650 37 1 5.1400 -6.7195 0.5123 38 1 5.9996 -7.3784 2.7081 39 1 5.5015 -5.6705 2.7668 40 1 5.5718 -6.7952 7.4534 41 1 3.9729 -6.4855 8.2581 42 1 4.9899 -9.6161 9.4355 43 1 4.1793 -11.8066 8.6690 44 1 2.7247 -10.0117 5.0825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861319538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:41 Heat of formation + Delta-G solvation = -161.228506 kcal Electronic energy + Delta-G solvation = -27648.893537 eV Core-core repulsion = 23254.665213 eV Total energy + Delta-G solvation = -4394.228323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.28943 -41.51715 -39.94371 -38.09769 -36.85339 -36.18734 -35.42437 -32.74607 -31.41380 -31.11008 -29.04191 -28.06841 -26.75803 -25.96877 -23.47760 -22.58184 -22.40494 -21.91716 -21.67493 -20.40623 -18.33784 -17.77466 -17.23247 -17.09006 -16.66529 -16.39714 -16.13673 -15.97597 -15.93563 -15.61846 -14.96018 -14.83679 -14.60185 -14.35461 -14.14626 -14.05120 -13.72801 -13.57536 -13.06093 -12.87660 -12.74773 -12.36678 -12.23885 -12.08993 -11.78343 -11.74555 -11.62923 -11.22078 -11.15809 -10.85730 -10.80588 -10.77580 -10.70396 -10.49394 -9.99255 -9.52505 -9.47558 -9.06775 -8.94331 -8.82142 -8.15695 -6.09375 -4.10519 0.56018 0.71679 1.87836 2.38003 3.06383 3.30383 3.36424 3.36666 3.43663 3.69458 3.70727 3.85601 4.03931 4.36197 4.43953 4.48532 4.72922 4.75083 4.82327 4.86327 4.98632 5.04124 5.13192 5.16410 5.27152 5.27324 5.32169 5.40337 5.44821 5.53603 5.54729 5.60332 5.62547 5.70414 6.00834 6.01690 6.08673 6.21083 6.23318 6.37336 7.11118 7.30845 7.45038 7.50176 7.81854 8.17126 8.59692 9.03291 9.54127 11.02306 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.001933 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.923136 B =14480.099320 C =15189.145379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.061 3.939 15 C 0.070 3.930 16 O -0.340 6.340 17 C 0.481 3.519 18 O -0.502 6.502 19 C -0.040 4.040 20 H 0.141 0.859 21 C -0.055 4.055 22 C -0.126 4.126 23 C -0.068 4.068 24 C -0.142 4.142 25 C 0.098 3.902 26 F -0.136 7.136 27 C -0.115 4.115 28 C -0.098 4.098 29 H 0.263 0.737 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.114 0.886 41 H 0.109 0.891 42 H 0.134 0.866 43 H 0.142 0.858 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.315 -23.722 15.106 29.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.016 4.016 15 C -0.003 4.003 16 O -0.256 6.256 17 C 0.323 3.677 18 O -0.390 6.390 19 C -0.058 4.058 20 H 0.159 0.841 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.086 4.086 24 C -0.160 4.160 25 C 0.079 3.921 26 F -0.114 7.114 27 C -0.134 4.134 28 C -0.098 4.098 29 H 0.073 0.927 30 H 0.022 0.978 31 H 0.024 0.976 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.132 0.868 41 H 0.127 0.873 42 H 0.151 0.849 43 H 0.159 0.841 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.659 -23.391 15.234 29.227 hybrid contribution -0.042 0.361 -0.494 0.614 sum 8.617 -23.029 14.740 28.668 Atomic orbital electron populations 1.69969 1.06092 1.27012 1.50778 1.24958 0.94994 0.99452 0.95219 0.86282 0.80048 0.82581 0.77594 1.19475 1.20875 1.20821 1.21101 0.94116 0.89339 1.50480 0.91499 1.20214 0.88803 0.83671 0.95362 1.87909 1.35188 1.12654 1.95168 1.22254 0.93690 0.85623 0.99879 1.22598 0.94066 0.97384 0.86759 1.88098 1.47036 1.54873 1.38679 1.22501 0.91348 0.93127 0.94601 1.23199 0.90919 1.02927 0.83286 1.86545 1.44553 1.79569 1.14927 1.22884 0.86937 0.73667 0.84226 1.90671 1.18892 1.43314 1.86082 1.21249 1.00437 0.92503 0.91646 0.84091 1.21907 1.03533 0.90568 0.93118 1.22333 0.98468 0.96324 0.95483 1.20117 0.98930 0.89802 0.99743 1.21054 1.00515 0.98912 0.95568 1.17315 0.99765 0.80588 0.94431 1.91525 1.87266 1.42514 1.90117 1.20218 1.02053 0.90043 1.01096 1.21423 0.98877 0.92938 0.96556 0.92736 0.97756 0.97627 0.92944 0.93592 0.92682 0.92666 0.92503 0.90884 0.89768 0.89615 0.86782 0.87274 0.84859 0.84058 0.84458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.28 55.43 0.74 -26.44 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.51 -15.40 9.43 -34.44 -0.32 -15.72 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.44 5.69 36.01 0.20 5.64 16 10 O -0.39 -9.74 10.29 -40.09 -0.41 -10.15 16 11 C 0.06 1.20 6.32 37.16 0.23 1.43 16 12 C 0.07 1.03 6.32 37.16 0.23 1.27 16 13 O -0.37 -6.08 10.28 -48.79 -0.50 -6.58 16 14 C 0.06 0.72 6.33 37.16 0.24 0.95 16 15 C 0.07 0.84 5.84 37.16 0.22 1.05 16 16 O -0.34 -4.42 10.19 -42.02 -0.43 -4.85 16 17 C 0.48 5.84 7.49 36.00 0.27 6.11 16 18 O -0.50 -7.07 15.45 -18.75 -0.29 -7.36 16 19 C -0.04 -0.36 4.44 -92.22 -0.41 -0.77 16 20 H 0.14 1.05 8.14 -51.93 -0.42 0.62 16 21 C -0.05 -0.40 7.77 -27.18 -0.21 -0.61 16 22 C -0.13 -1.02 7.49 -103.78 -0.78 -1.80 16 23 C -0.07 -0.47 10.02 -39.59 -0.40 -0.86 16 24 C -0.14 -1.01 10.02 -39.56 -0.40 -1.41 16 25 C 0.10 0.87 7.30 -39.47 -0.29 0.58 16 26 F -0.14 -1.30 17.27 2.25 0.04 -1.26 16 27 C -0.12 -1.06 10.00 -39.56 -0.40 -1.45 16 28 C -0.10 -0.90 6.99 -103.83 -0.73 -1.62 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.81 8.13 -51.93 -0.42 0.39 16 39 H 0.09 1.13 8.13 -51.93 -0.42 0.70 16 40 H 0.11 0.92 7.05 -51.93 -0.37 0.56 16 41 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -35.61 389.57 -8.88 -44.50 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: -6.25 Total: -5.13 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -2.63 Total: -5.70 kcal Atomic # 7 Polarization: -27.18 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -1.63 Total: -28.93 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.61 -8.88 -44.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.733 kcal (2) G-P(sol) polarization free energy of solvation -35.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds