Wall clock time and date at job start Tue Mar 31 2020 20:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31502 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48503 * 109.47295 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46716 * 300.00009 * 3 2 1 6 6 H 1.48496 * 109.47278 * 59.99832 * 3 2 1 7 7 C 1.37885 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99566 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99844 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.46545 * 180.02562 * 9 7 2 11 11 C 1.42899 * 113.99649 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47405 * 179.97438 * 11 10 9 13 13 O 1.42903 * 109.46726 * 64.99720 * 12 11 10 14 14 C 1.42899 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.53009 * 109.47113 * 180.02562 * 14 13 12 16 16 O 1.45193 * 109.46913 * 64.99838 * 15 14 13 17 17 C 1.34229 * 116.99914 * 180.02562 * 16 15 14 18 18 O 1.20828 * 119.99874 * 359.97438 * 17 16 15 19 19 C 1.50697 * 120.00141 * 180.02562 * 17 16 15 20 20 H 1.08996 * 112.83161 * 309.66579 * 19 17 16 21 21 C 1.53517 * 113.58901 * 178.55343 * 19 17 16 22 22 C 1.51617 * 87.25430 * 245.40602 * 21 19 17 23 23 C 1.38387 * 147.49326 * 180.02562 * 22 21 19 24 24 C 1.38053 * 120.36111 * 179.97438 * 23 22 21 25 25 C 1.38468 * 119.92856 * 0.02562 * 24 23 22 26 26 F 1.35101 * 120.04964 * 180.02562 * 25 24 23 27 27 C 1.38320 * 119.90284 * 359.97438 * 25 24 23 28 28 C 1.38219 * 120.38289 * 359.95575 * 27 25 24 29 29 H 0.97004 * 120.00403 * 359.97438 * 1 2 3 30 30 H 1.08990 * 109.47088 * 60.00044 * 9 7 2 31 31 H 1.08992 * 109.46694 * 299.99407 * 9 7 2 32 32 H 1.09002 * 109.47445 * 59.99875 * 11 10 9 33 33 H 1.09002 * 109.47167 * 299.99793 * 11 10 9 34 34 H 1.09002 * 109.47398 * 184.99964 * 12 11 10 35 35 H 1.09001 * 109.47194 * 305.00145 * 12 11 10 36 36 H 1.09007 * 109.47484 * 299.99646 * 14 13 12 37 37 H 1.09004 * 109.47459 * 59.99983 * 14 13 12 38 38 H 1.09000 * 109.47262 * 184.99920 * 15 14 13 39 39 H 1.09002 * 109.46484 * 304.99927 * 15 14 13 40 40 H 1.08999 * 113.58334 * 0.02562 * 21 19 17 41 41 H 1.09007 * 113.58673 * 130.81429 * 21 19 17 42 42 H 1.08007 * 119.82022 * 359.97438 * 23 22 21 43 43 H 1.07997 * 120.03837 * 179.97438 * 24 23 22 44 44 H 1.07992 * 119.84905 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9563 0.0030 13 8 3.3872 -5.8890 1.2241 14 6 4.4295 -6.8611 1.3267 15 6 5.1496 -6.6973 2.6667 16 8 4.2319 -7.0023 3.7498 17 6 4.7109 -6.9051 4.9999 18 8 5.8591 -6.5766 5.1831 19 6 3.8169 -7.2069 6.1749 20 1 2.8652 -6.6775 6.1292 21 6 4.5237 -7.0838 7.5322 22 6 4.3155 -8.5769 7.6938 23 6 4.4928 -9.7016 8.4804 24 6 4.0378 -10.9322 8.0511 25 6 3.4007 -11.0445 6.8268 26 9 2.9540 -12.2476 6.4045 27 6 3.2214 -9.9230 6.0373 28 6 3.6738 -8.6885 6.4635 29 1 -0.4851 0.8400 0.0004 30 1 0.6246 -2.5571 -0.8896 31 1 0.6240 -2.5567 0.8903 32 1 0.9451 -4.9831 -0.8877 33 1 0.9444 -4.9818 0.8922 34 1 2.1818 -6.9376 -0.0860 35 1 3.3214 -5.7962 -0.8388 36 1 4.0008 -7.8615 1.2650 37 1 5.1400 -6.7195 0.5123 38 1 5.9996 -7.3784 2.7081 39 1 5.5015 -5.6705 2.7668 40 1 5.5718 -6.7952 7.4534 41 1 3.9729 -6.4855 8.2581 42 1 4.9899 -9.6161 9.4355 43 1 4.1793 -11.8066 8.6690 44 1 2.7247 -10.0117 5.0825 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861319538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:40 Heat of formation + Delta-G solvation = -181.982923 kcal Electronic energy + Delta-G solvation = -27649.793516 eV Core-core repulsion = 23254.665213 eV Total energy + Delta-G solvation = -4395.128303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.141 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.97292 -42.29021 -40.75577 -39.35527 -38.24974 -37.52479 -36.10158 -34.95118 -32.35556 -31.93886 -30.47134 -28.92104 -28.63184 -26.66236 -24.55803 -24.23549 -23.40231 -23.37050 -22.40918 -21.16194 -19.19349 -18.68177 -18.50065 -18.27543 -17.83117 -17.65913 -17.48008 -17.04182 -16.65995 -16.64919 -16.23829 -16.10513 -15.95023 -15.81414 -15.26449 -14.88930 -14.63799 -14.49361 -14.39737 -13.88551 -13.67921 -13.56716 -13.37970 -13.12254 -13.01095 -12.82333 -12.75555 -12.69740 -12.43679 -12.38462 -12.25040 -11.94260 -11.92168 -11.66990 -11.51271 -11.28906 -10.90157 -10.59023 -10.25135 -10.10167 -9.56935 -8.33497 -6.45764 -0.06180 0.10447 0.95775 1.38964 1.40696 1.54441 1.55489 2.34054 2.45209 2.63205 2.70383 2.99944 3.11384 3.18520 3.20727 3.45043 3.61326 3.83397 3.92409 4.04984 4.12336 4.16014 4.22033 4.24258 4.31784 4.44255 4.47110 4.55105 4.57614 4.60989 4.67166 4.76229 4.77011 4.88552 4.89021 4.95000 5.02591 5.13426 5.16516 5.29044 5.48461 5.53648 5.78227 5.94690 6.23391 6.52673 6.55527 6.81099 7.26061 8.79098 Molecular weight = 338.14amu Principal moments of inertia in cm(-1) A = 0.014580 B = 0.001933 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.923136 B =14480.099320 C =15189.145379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.074 3.926 13 O -0.407 6.407 14 C 0.060 3.940 15 C 0.065 3.935 16 O -0.352 6.352 17 C 0.477 3.523 18 O -0.527 6.527 19 C -0.043 4.043 20 H 0.154 0.846 21 C -0.046 4.046 22 C -0.128 4.128 23 C -0.066 4.066 24 C -0.135 4.135 25 C 0.080 3.920 26 F -0.144 7.144 27 C -0.128 4.128 28 C -0.118 4.118 29 H 0.271 0.729 30 H -0.009 1.009 31 H -0.017 1.017 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.136 0.864 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.205 -24.104 15.980 30.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.327 6.327 14 C -0.016 4.016 15 C -0.008 4.008 16 O -0.268 6.268 17 C 0.321 3.679 18 O -0.416 6.416 19 C -0.062 4.062 20 H 0.172 0.828 21 C -0.083 4.083 22 C -0.128 4.128 23 C -0.084 4.084 24 C -0.154 4.154 25 C 0.061 3.939 26 F -0.122 7.122 27 C -0.147 4.147 28 C -0.118 4.118 29 H 0.080 0.920 30 H 0.009 0.991 31 H 0.001 0.999 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.124 0.876 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.154 0.846 42 H 0.181 0.819 43 H 0.184 0.816 44 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.540 -23.807 16.102 30.283 hybrid contribution -0.343 0.364 -0.754 0.905 sum 9.198 -23.442 15.348 29.491 Atomic orbital electron populations 1.70066 1.07696 1.28638 1.50464 1.25983 0.96033 1.03419 0.93896 0.85123 0.78565 0.77225 0.78401 1.19000 1.19389 1.19562 1.21411 0.94018 0.90946 1.52272 0.92274 1.19843 0.88639 0.84723 0.93538 1.87858 1.35376 1.14316 1.95221 1.22675 0.95636 0.83958 1.00497 1.22597 0.93376 0.97497 0.86680 1.88035 1.48499 1.56882 1.39283 1.22739 0.90827 0.93157 0.94923 1.23317 0.91639 1.02382 0.83455 1.86553 1.45166 1.79550 1.15576 1.23523 0.87074 0.72740 0.84547 1.90646 1.20055 1.44573 1.86349 1.21430 1.00654 0.92967 0.91145 0.82834 1.21933 1.03226 0.90604 0.92506 1.22553 0.98024 0.97009 0.95205 1.20463 0.98288 0.89042 1.00626 1.21381 0.99099 1.00005 0.94886 1.17530 1.00778 0.80223 0.95354 1.91500 1.87523 1.42887 1.90333 1.20316 1.02519 0.90445 1.01394 1.21486 1.00047 0.92802 0.97476 0.91969 0.99123 0.99876 0.91163 0.94108 0.88552 0.91881 0.90209 0.88786 0.87566 0.91614 0.87570 0.84603 0.81919 0.81633 0.84631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.57 13.28 21.45 0.28 -56.29 16 2 C 0.01 0.30 5.46 84.66 0.46 0.77 16 3 Si 0.98 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.55 -33.72 9.43 25.60 0.24 -33.48 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.21 12.06 5.69 71.24 0.41 12.47 16 10 O -0.41 -20.88 10.29 -144.34 -1.49 -22.37 16 11 C 0.05 1.87 6.32 71.98 0.45 2.32 16 12 C 0.07 2.15 6.32 71.98 0.45 2.60 16 13 O -0.41 -13.24 10.28 -136.01 -1.40 -14.63 16 14 C 0.06 1.32 6.33 71.99 0.46 1.77 16 15 C 0.07 1.55 5.84 71.99 0.42 1.97 16 16 O -0.35 -9.27 10.19 -48.76 -0.50 -9.76 16 17 C 0.48 11.78 7.49 71.23 0.53 12.31 16 18 O -0.53 -15.10 15.45 21.96 0.34 -14.76 16 19 C -0.04 -0.77 4.44 -11.83 -0.05 -0.83 16 20 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 21 C -0.05 -0.63 7.77 30.31 0.24 -0.39 16 22 C -0.13 -1.90 7.49 -19.32 -0.14 -2.04 16 23 C -0.07 -0.76 10.02 22.26 0.22 -0.54 16 24 C -0.14 -1.68 10.02 22.28 0.22 -1.45 16 25 C 0.08 1.37 7.30 22.34 0.16 1.54 16 26 F -0.14 -2.71 17.27 44.97 0.78 -1.93 16 27 C -0.13 -2.35 10.00 22.28 0.22 -2.13 16 28 C -0.12 -2.13 6.99 -19.35 -0.14 -2.26 16 29 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 30 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 31 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 38 H 0.11 1.99 8.13 -2.39 -0.02 1.97 16 39 H 0.07 1.80 8.13 -2.39 -0.02 1.78 16 40 H 0.11 1.64 7.05 -2.39 -0.02 1.63 16 41 H 0.14 1.06 8.14 -2.38 -0.02 1.04 16 42 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 43 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 44 H 0.14 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -78.45 389.57 5.22 -73.23 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.01 Total: 6.69 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: 4.16 Total: -7.37 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.28 Total: -56.29 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -3.04 Total: -61.53 kcal Atomic # 9 Polarization: -2.71 SS G_CDS: 0.78 Total: -1.93 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -78.45 5.22 -73.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.754 kcal (2) G-P(sol) polarization free energy of solvation -78.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds