Wall clock time and date at job start Tue Mar 31 2020 21:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30642 * 1 3 3 Si 1.86802 * 119.99662 * 2 1 4 4 H 1.48502 * 109.47196 * 240.00100 * 3 2 1 5 5 H 1.48504 * 109.47222 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46973 * 120.00102 * 3 2 1 7 7 C 1.40306 * 120.00286 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99521 * 191.27809 * 7 2 1 9 9 C 1.40532 * 120.00160 * 11.27566 * 7 2 1 10 10 C 1.44192 * 123.71667 * 21.21037 * 9 7 2 11 11 C 1.32758 * 114.43408 * 179.97438 * 10 9 7 12 12 S 1.75480 * 111.36166 * 359.73607 * 11 10 9 13 13 C 1.39549 * 123.71632 * 201.19523 * 9 7 2 14 14 C 1.46233 * 125.22652 * 0.02562 * 13 9 7 15 15 O 1.21763 * 120.00162 * 51.67251 * 14 13 9 16 16 N 1.34770 * 120.00281 * 231.39512 * 14 13 9 17 17 C 1.46931 * 120.63007 * 356.51377 * 16 14 13 18 18 C 1.53191 * 108.77675 * 126.36973 * 17 16 14 19 19 C 1.53038 * 109.31505 * 54.63199 * 18 17 16 20 20 H 1.09004 * 109.46077 * 58.64286 * 19 18 17 21 21 N 1.46904 * 109.46210 * 178.61414 * 19 18 17 22 22 C 1.47479 * 111.00059 * 195.74966 * 21 19 18 23 23 C 1.53516 * 87.92785 * 138.70675 * 22 21 19 24 24 C 1.47477 * 111.00003 * 291.72364 * 21 19 18 25 25 C 1.53038 * 109.53839 * 298.63580 * 19 18 17 26 26 H 1.09010 * 109.49421 * 181.31340 * 25 19 18 27 27 F 1.39900 * 109.49901 * 301.41205 * 25 19 18 28 28 C 1.46935 * 120.63393 * 176.23223 * 16 14 13 29 29 H 0.96993 * 120.00188 * 359.97438 * 1 2 3 30 30 H 1.08000 * 122.77934 * 359.97438 * 10 9 7 31 31 H 1.08001 * 124.32266 * 180.02562 * 11 10 9 32 32 H 1.08999 * 109.58266 * 246.15244 * 17 16 14 33 33 H 1.08994 * 109.58186 * 6.57878 * 17 16 14 34 34 H 1.08995 * 109.50209 * 174.58985 * 18 17 16 35 35 H 1.09001 * 109.49795 * 294.68358 * 18 17 16 36 36 H 1.08994 * 113.47563 * 253.46702 * 22 21 19 37 37 H 1.08990 * 113.47478 * 23.94234 * 22 21 19 38 38 H 1.08998 * 114.16841 * 220.33020 * 23 22 21 39 39 H 1.08999 * 114.34752 * 87.63566 * 23 22 21 40 40 H 1.08999 * 113.47991 * 336.06578 * 24 21 19 41 41 H 1.09007 * 113.47205 * 106.46648 * 24 21 19 42 42 H 1.08997 * 109.58527 * 353.41754 * 28 16 14 43 43 H 1.08993 * 109.58771 * 113.84170 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0941 1.6966 -1.2125 5 1 1.2753 2.7465 0.0006 6 1 3.0941 1.6965 1.2125 7 6 2.0080 -1.2151 -0.0005 8 1 3.0723 -1.2240 0.1824 9 6 1.3258 -2.4203 -0.2390 10 6 0.0517 -2.4997 -0.9095 11 6 -0.4260 -3.7318 -1.0369 12 16 0.6665 -4.9159 -0.3415 13 6 1.8069 -3.6722 0.1466 14 6 3.0695 -3.9123 0.8442 15 8 3.3305 -3.2948 1.8607 16 7 3.9419 -4.8209 0.3652 17 6 3.6063 -5.6324 -0.8128 18 6 4.7243 -5.4828 -1.8494 19 6 6.0650 -5.8381 -1.2027 20 1 6.0261 -6.8594 -0.8237 21 7 7.1353 -5.7278 -2.2029 22 6 8.3605 -6.4080 -1.7431 23 6 8.5312 -6.9452 -3.1711 24 6 7.0067 -6.7759 -3.2324 25 6 6.3465 -4.8759 -0.0465 26 1 7.3124 -5.1148 0.3987 27 9 6.3651 -3.5619 -0.5265 28 6 5.2493 -5.0147 1.0073 29 1 -0.4850 0.8400 0.0004 30 1 -0.4707 -1.6290 -1.2775 31 1 -1.3648 -3.9748 -1.5123 32 1 3.5155 -6.6789 -0.5218 33 1 2.6645 -5.2863 -1.2385 34 1 4.5355 -6.1536 -2.6875 35 1 4.7540 -4.4534 -2.2064 36 1 9.1508 -5.7212 -1.4403 37 1 8.1732 -7.1880 -1.0053 38 1 8.8675 -7.9808 -3.2210 39 1 9.0812 -6.2815 -3.8381 40 1 6.4581 -7.6541 -2.8920 41 1 6.6488 -6.4010 -4.1913 42 1 5.3911 -4.2612 1.7819 43 1 5.2952 -6.0097 1.4497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867857102.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:29 Heat of formation + Delta-G solvation = -37.168208 kcal Electronic energy + Delta-G solvation = -27971.088810 eV Core-core repulsion = 24057.285767 eV Total energy + Delta-G solvation = -3913.803043 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.60767 -41.26902 -40.41014 -38.09483 -37.38788 -34.89141 -33.65284 -32.24821 -30.78609 -29.18444 -27.87859 -26.90477 -25.15676 -24.24491 -23.65478 -22.05939 -20.91649 -20.77420 -20.36746 -18.95211 -17.93914 -17.30662 -17.24516 -17.13115 -17.00673 -16.70329 -16.27683 -16.10227 -15.85550 -15.37996 -14.97677 -14.63815 -14.26636 -14.20526 -13.97310 -13.88632 -13.61193 -13.45607 -13.38562 -13.24554 -13.10812 -12.84023 -12.79140 -12.46271 -12.29495 -12.09624 -12.07345 -12.04417 -11.77222 -11.53480 -11.32956 -11.19585 -11.06741 -10.63513 -9.79911 -9.63142 -9.33698 -8.85666 -8.81483 -6.44894 0.39831 1.26472 1.30094 1.32450 1.41108 1.57422 2.00573 2.09810 2.14562 2.47721 2.91776 3.25376 3.30742 3.44647 3.65702 3.71135 3.86861 3.97807 4.04518 4.22343 4.25785 4.27092 4.43801 4.45799 4.53471 4.55953 4.66717 4.78605 4.79432 4.82535 4.90716 4.93359 4.99054 5.02282 5.20347 5.27957 5.29789 5.36766 5.38164 5.55194 5.71386 5.85384 6.10666 6.26642 6.52318 6.63124 6.79457 7.49845 8.10914 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013375 B = 0.003997 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2092.893000 B = 7003.309008 C = 7959.371027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.043 3.957 3 Si 0.981 3.019 4 H -0.258 1.258 5 H -0.247 1.247 6 H -0.273 1.273 7 C -0.440 4.440 8 H 0.053 0.947 9 C 0.115 3.885 10 C -0.126 4.126 11 C -0.203 4.203 12 S 0.041 5.959 13 C -0.468 4.468 14 C 0.615 3.385 15 O -0.601 6.601 16 N -0.614 5.614 17 C 0.099 3.901 18 C -0.115 4.115 19 C 0.036 3.964 20 H 0.095 0.905 21 N -0.496 5.496 22 C -0.009 4.009 23 C -0.133 4.133 24 C -0.002 4.002 25 C 0.088 3.912 26 H 0.114 0.886 27 F -0.226 7.226 28 C 0.084 3.916 29 H 0.299 0.701 30 H 0.141 0.859 31 H 0.178 0.822 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.073 0.927 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.679 -14.751 -7.136 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.182 1.182 5 H -0.170 1.170 6 H -0.198 1.198 7 C -0.471 4.471 8 H 0.072 0.928 9 C 0.104 3.896 10 C -0.159 4.159 11 C -0.337 4.337 12 S 0.298 5.702 13 C -0.586 4.586 14 C 0.408 3.592 15 O -0.484 6.484 16 N -0.347 5.347 17 C -0.024 4.024 18 C -0.153 4.153 19 C -0.073 4.073 20 H 0.112 0.888 21 N -0.219 5.219 22 C -0.137 4.137 23 C -0.171 4.171 24 C -0.131 4.131 25 C 0.051 3.949 26 H 0.131 0.869 27 F -0.207 7.207 28 C -0.039 4.039 29 H 0.111 0.889 30 H 0.159 0.841 31 H 0.195 0.805 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 10.507 -15.092 -6.650 19.555 hybrid contribution 0.066 2.014 0.464 2.068 sum 10.573 -13.079 -6.186 17.920 Atomic orbital electron populations 1.69620 1.08505 1.31655 1.32754 1.26798 0.95787 1.04299 0.90751 0.85272 0.79115 0.75668 0.79848 1.18182 1.16959 1.19799 1.19351 0.95519 0.91647 1.40625 0.92827 1.18198 0.90951 0.91679 0.88752 1.21591 0.96182 0.97453 1.00638 1.25529 1.04498 0.96273 1.07410 1.82329 1.13738 1.10155 1.63967 1.22876 1.05987 0.96985 1.32734 1.17237 0.82992 0.76802 0.82171 1.90624 1.79435 1.51388 1.26960 1.47980 1.15860 1.39618 1.31286 1.22167 0.99862 0.95372 0.85033 1.21765 0.92917 1.02175 0.98479 1.22724 0.93176 0.98598 0.92808 0.88772 1.69082 1.03270 1.40484 1.09037 1.23924 0.93689 0.97765 0.98348 1.23027 0.95408 1.02663 0.95987 1.23836 0.97982 0.94076 0.97169 1.22077 1.00241 0.78011 0.94551 0.86886 1.92800 1.97864 1.39893 1.90117 1.22162 0.82176 1.04139 0.95470 0.88925 0.84116 0.80516 0.89087 0.88764 0.88062 0.94021 0.90347 0.89423 0.88408 0.89469 0.89544 0.90298 0.90893 0.86882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -40.73 10.75 21.89 0.24 -40.49 16 2 C 0.04 2.22 5.38 85.37 0.46 2.68 16 3 Si 0.98 40.60 29.58 68.60 2.03 42.63 16 4 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 5 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.44 -25.83 8.65 23.33 0.20 -25.63 16 8 H 0.05 3.37 7.53 -2.91 -0.02 3.35 16 9 C 0.12 6.47 5.70 -20.89 -0.12 6.35 16 10 C -0.13 -6.29 9.06 22.61 0.20 -6.08 16 11 C -0.20 -8.51 11.07 66.64 0.74 -7.77 16 12 S 0.04 1.69 20.47 -56.49 -1.16 0.53 16 13 C -0.47 -24.43 5.33 24.67 0.13 -24.29 16 14 C 0.61 31.90 6.99 86.32 0.60 32.50 16 15 O -0.60 -35.98 16.10 -4.55 -0.07 -36.06 16 16 N -0.61 -24.37 2.96 -824.90 -2.44 -26.81 16 17 C 0.10 3.13 5.93 86.36 0.51 3.65 16 18 C -0.11 -3.18 5.29 30.67 0.16 -3.02 16 19 C 0.04 0.83 1.32 44.94 0.06 0.89 16 20 H 0.09 1.58 7.56 -2.38 -0.02 1.56 16 21 N -0.50 -10.70 6.07 -902.41 -5.48 -16.18 16 22 C -0.01 -0.13 7.06 83.58 0.59 0.46 16 23 C -0.13 -1.63 8.47 30.94 0.26 -1.36 16 24 C 0.00 -0.03 6.69 83.58 0.56 0.53 16 25 C 0.09 2.50 3.61 30.53 0.11 2.61 16 26 H 0.11 2.46 7.70 -2.38 -0.02 2.44 16 27 F -0.23 -9.00 16.41 44.97 0.74 -8.26 16 28 C 0.08 2.72 6.13 86.22 0.53 3.25 16 29 H 0.30 13.46 8.29 -92.71 -0.77 12.69 16 30 H 0.14 7.05 6.29 -2.91 -0.02 7.04 16 31 H 0.18 5.87 8.06 -2.91 -0.02 5.85 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.09 3.42 4.37 -11.11 -0.05 3.37 16 34 H 0.10 2.20 7.42 -2.39 -0.02 2.19 16 35 H 0.04 1.52 7.73 -2.39 -0.02 1.50 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 0.98 7.67 -2.39 -0.02 0.96 16 38 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.09 1.03 7.80 -2.39 -0.02 1.01 16 41 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.07 2.82 7.03 -2.39 -0.02 2.80 16 43 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -74.71 356.64 -0.15 -74.86 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: 1.00 Total: 25.00 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 5.00 Total: -15.23 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -7.69 Total: -83.48 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.07 Total: -36.06 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 0.74 Total: -8.26 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -1.16 Total: 0.53 kcal Total: -74.71 -0.15 -74.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867857102.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.694 kcal (2) G-P(sol) polarization free energy of solvation -74.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds