Wall clock time and date at job start Tue Mar 31 2020 21:06:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31865 * 119.65994 * 2 1 4 4 C 1.31939 * 121.77578 * 180.31298 * 3 2 1 5 5 Cl 1.73600 * 119.55697 * 179.70068 * 4 3 2 6 6 C 1.38421 * 120.88315 * 359.67790 * 4 3 2 7 7 C 1.38463 * 119.22300 * 0.02562 * 6 4 3 8 8 C 1.38789 * 119.66093 * 179.72778 * 2 1 3 9 9 N 1.40032 * 120.47005 * 0.02562 * 8 2 1 10 10 C 1.34775 * 119.99791 * 196.48843 * 9 8 2 11 11 O 1.21582 * 120.00186 * 4.81893 * 10 9 8 12 12 N 1.34780 * 119.99840 * 184.81957 * 10 9 8 13 13 C 1.47084 * 120.87920 * 354.91103 * 12 10 9 14 14 C 1.53244 * 108.51816 * 231.15907 * 13 12 10 15 15 N 1.46896 * 109.33987 * 306.17098 * 14 13 12 16 16 C 1.46896 * 110.99610 * 187.25172 * 15 14 13 17 17 C 1.50699 * 109.46932 * 170.00267 * 16 15 14 18 18 H 1.07998 * 120.00440 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99991 * 180.02562 * 17 16 15 20 20 N 1.31508 * 120.00184 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99751 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47576 * 89.99871 * 21 19 17 23 23 H 1.48506 * 109.46895 * 209.99572 * 21 19 17 24 24 H 1.48493 * 109.47165 * 329.99167 * 21 19 17 25 25 C 1.46898 * 111.26908 * 63.10559 * 15 14 13 26 26 C 1.47077 * 120.88032 * 174.88665 * 12 10 9 27 27 H 1.08997 * 109.46836 * 270.27176 * 1 2 3 28 28 H 1.09001 * 109.46683 * 30.27004 * 1 2 3 29 29 H 1.08990 * 109.46995 * 150.27002 * 1 2 3 30 30 H 1.07997 * 120.38550 * 180.02562 * 6 4 3 31 31 H 1.08001 * 120.80890 * 179.97438 * 7 6 4 32 32 H 0.97007 * 119.99790 * 16.48528 * 9 8 2 33 33 H 1.08998 * 109.62695 * 111.45116 * 13 12 10 34 34 H 1.09001 * 109.62987 * 350.87048 * 13 12 10 35 35 H 1.09000 * 109.48865 * 186.21151 * 14 13 12 36 36 H 1.09000 * 109.49068 * 66.13531 * 14 13 12 37 37 H 1.09001 * 109.47440 * 289.99822 * 16 15 14 38 38 H 1.09000 * 109.47524 * 50.00096 * 16 15 14 39 39 H 0.96996 * 120.00072 * 180.02562 * 20 19 17 40 40 H 1.09004 * 109.49342 * 56.85358 * 25 15 14 41 41 H 1.08999 * 109.49412 * 176.90276 * 25 15 14 42 42 H 1.08996 * 109.62712 * 9.12527 * 26 12 10 43 43 H 1.09000 * 109.62531 * 248.54655 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1596 1.1459 0.0000 4 6 3.4780 1.1946 -0.0061 5 17 4.2780 2.7353 -0.0136 6 6 4.2319 0.0337 -0.0062 7 6 3.5867 -1.1914 -0.0002 8 6 2.1938 -1.2060 0.0057 9 7 1.4965 -2.4203 0.0110 10 6 2.1313 -3.5605 0.3477 11 8 3.2845 -3.5238 0.7311 12 7 1.4877 -4.7415 0.2593 13 6 0.0613 -4.7992 -0.0949 14 6 -0.6640 -5.6595 0.9454 15 7 0.0036 -6.9639 1.0488 16 6 -0.7600 -7.8794 1.9071 17 6 -0.1862 -9.2684 1.7956 18 1 0.6607 -9.4528 1.1513 19 6 -0.7431 -10.3042 2.5154 20 7 -1.7747 -10.0799 3.2996 21 14 -0.0314 -12.0258 2.3777 22 1 1.0245 -12.2087 3.4056 23 1 -1.1087 -13.0254 2.5915 24 1 0.5555 -12.2122 1.0264 25 6 1.3840 -6.8193 1.5302 26 6 2.1933 -6.0065 0.5140 27 1 -0.3633 0.0049 1.0276 28 1 -0.3633 0.8876 -0.5180 29 1 -0.3633 -0.8923 -0.5096 30 1 5.3108 0.0830 -0.0108 31 1 4.1496 -2.1131 -0.0005 32 1 0.5564 -2.4408 -0.2277 33 1 -0.0528 -5.2453 -1.0828 34 1 -0.3572 -3.7927 -0.0939 35 1 -1.7000 -5.8044 0.6389 36 1 -0.6373 -5.1593 1.9134 37 1 -0.6989 -7.5431 2.9421 38 1 -1.8027 -7.8904 1.5896 39 1 -2.1662 -10.8085 3.8062 40 1 1.3822 -6.3029 2.4902 41 1 1.8331 -7.8053 1.6484 42 1 3.1842 -5.7983 0.9174 43 1 2.2840 -6.5687 -0.4155 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879425356.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:06:53 Heat of formation + Delta-G solvation = 27.621613 kcal Electronic energy + Delta-G solvation = -26609.743040 eV Core-core repulsion = 22716.625750 eV Total energy + Delta-G solvation = -3893.117290 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.47081 -40.02212 -37.97373 -36.91230 -35.43983 -34.69701 -33.34309 -32.52853 -31.30721 -30.60330 -28.46782 -27.68681 -25.69390 -24.21799 -23.25225 -22.63656 -22.21537 -20.97169 -19.76119 -18.75591 -17.51296 -17.12998 -16.55765 -16.42784 -15.85282 -15.61533 -15.05057 -14.81673 -14.61961 -14.28563 -14.12703 -14.03214 -13.79945 -13.71260 -13.29605 -13.21250 -12.75586 -12.61901 -12.34456 -12.15334 -12.00047 -11.54216 -11.39431 -11.33282 -11.02575 -10.94336 -10.86405 -10.72371 -10.62993 -10.45313 -9.99129 -9.94714 -9.64347 -9.36078 -8.80279 -8.53901 -8.28383 -7.46065 -6.12884 -4.15113 0.59394 0.91072 1.57285 2.25218 2.80574 3.25753 3.32635 3.35966 3.39365 3.45470 3.97876 4.31540 4.34234 4.51688 4.58119 4.72845 4.97964 5.03513 5.10105 5.13663 5.20844 5.23029 5.26139 5.44542 5.48768 5.61032 5.64000 5.71628 5.77611 5.84132 5.90372 6.03902 6.22533 6.39000 6.39446 6.46861 6.68208 7.10794 7.18011 7.41129 7.54315 7.65839 7.90069 8.01692 8.19836 8.37625 8.91875 9.49856 10.97861 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.032818 B = 0.002051 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.994128 B =13651.819243 C =14205.396579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.107 3.893 3 N -0.456 5.456 4 C 0.147 3.853 5 Cl -0.039 7.039 6 C -0.132 4.132 7 C -0.089 4.089 8 C 0.135 3.865 9 N -0.675 5.675 10 C 0.707 3.293 11 O -0.574 6.574 12 N -0.615 5.615 13 C 0.114 3.886 14 C 0.040 3.960 15 N -0.534 5.534 16 C 0.194 3.806 17 C -0.511 4.511 18 H 0.064 0.936 19 C 0.056 3.944 20 N -0.897 5.897 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.049 3.951 26 C 0.131 3.869 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.183 0.817 32 H 0.410 0.590 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.028 0.972 37 H -0.008 1.008 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 20.457 -8.700 23.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.035 4.035 3 N -0.167 5.167 4 C -0.019 4.019 5 Cl -0.010 7.010 6 C -0.154 4.154 7 C -0.117 4.117 8 C 0.035 3.965 9 N -0.324 5.324 10 C 0.409 3.591 11 O -0.453 6.453 12 N -0.350 5.350 13 C -0.010 4.010 14 C -0.090 4.090 15 N -0.260 5.260 16 C 0.069 3.931 17 C -0.550 4.550 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.727 3.273 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.080 4.080 26 C 0.008 3.992 27 H 0.102 0.898 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.165 0.835 31 H 0.200 0.800 32 H 0.250 0.750 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.046 0.954 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.118 0.882 42 H 0.110 0.890 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.707 20.953 -8.771 23.684 hybrid contribution 0.135 -1.174 0.802 1.428 sum 6.842 19.779 -7.968 22.394 Atomic orbital electron populations 1.20674 0.88046 1.03513 1.03698 1.20749 0.96793 0.85583 1.00386 1.66725 1.08534 1.28640 1.12784 1.21501 0.89689 0.87411 1.03284 1.98392 1.76875 1.29033 1.96731 1.21822 1.01784 0.90454 1.01328 1.22391 0.92852 1.00164 0.96245 1.18478 0.92409 0.85456 1.00164 1.42891 1.14421 1.04645 1.70440 1.15812 0.84621 0.80166 0.78494 1.90766 1.16373 1.85076 1.53048 1.47510 1.11117 1.04952 1.71465 1.21890 0.79639 0.99183 1.00239 1.22384 0.98496 0.91447 0.96664 1.62101 1.01840 1.08272 1.53744 1.19733 0.93449 0.90492 0.89404 1.21118 1.15646 0.92326 1.25881 0.91747 1.24997 0.95025 0.99335 0.95214 1.69945 1.22870 1.32574 1.28243 0.86484 0.78630 0.83721 0.78514 1.20686 1.21243 1.19718 1.22382 0.90658 1.00510 0.94448 1.21875 0.95970 0.81216 1.00105 0.89753 0.89532 0.91168 0.83497 0.80019 0.74985 0.89931 0.91410 0.89754 0.95365 0.99051 0.94981 0.92816 0.95565 0.88170 0.88967 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.87 36.01 0.36 -0.36 16 2 C 0.11 1.11 6.80 -82.37 -0.56 0.55 16 3 N -0.46 -5.37 10.25 -6.47 -0.07 -5.44 16 4 C 0.15 1.64 7.27 -17.44 -0.13 1.51 16 5 Cl -0.04 -0.38 29.10 -51.86 -1.51 -1.89 16 6 C -0.13 -1.36 9.87 -39.43 -0.39 -1.75 16 7 C -0.09 -1.02 8.94 -39.11 -0.35 -1.37 16 8 C 0.13 1.50 6.53 -83.52 -0.55 0.95 16 9 N -0.68 -7.01 5.18 -14.12 -0.07 -7.08 16 10 C 0.71 9.40 8.19 -86.92 -0.71 8.69 16 11 O -0.57 -9.07 12.60 5.29 0.07 -9.00 16 12 N -0.61 -8.06 3.01 -178.19 -0.54 -8.59 16 13 C 0.11 1.28 6.54 -3.60 -0.02 1.25 16 14 C 0.04 0.59 5.62 -3.70 -0.02 0.57 16 15 N -0.53 -10.20 4.62 -235.77 -1.09 -11.29 16 16 C 0.19 4.68 4.72 -4.98 -0.02 4.65 16 17 C -0.51 -13.47 8.41 -34.44 -0.29 -13.76 16 18 H 0.06 1.67 7.13 -52.49 -0.37 1.29 16 19 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 20 N -0.90 -25.63 13.29 55.43 0.74 -24.89 16 21 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C 0.05 0.87 5.46 -3.70 -0.02 0.85 16 26 C 0.13 1.89 6.61 -3.61 -0.02 1.86 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.35 6.39 -51.93 -0.33 0.01 16 30 H 0.15 1.16 8.06 -52.49 -0.42 0.74 16 31 H 0.18 2.31 5.32 -52.50 -0.28 2.03 16 32 H 0.41 3.15 4.29 -40.82 -0.18 2.98 16 33 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.52 5.74 -51.93 -0.30 0.23 16 35 H 0.08 1.20 7.99 -51.93 -0.41 0.78 16 36 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 37 H -0.01 -0.22 8.12 -51.93 -0.42 -0.64 16 38 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 1.90 6.67 -51.93 -0.35 1.56 16 42 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 43 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 361.06 15.07 5.44 5.44 Total: -1.00 -30.97 361.06 -10.39 -41.37 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.52 Total: 0.56 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -2.83 Total: 5.08 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: -1.03 Total: -57.30 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.07 Total: -9.00 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.51 Total: -1.89 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.97 -10.39 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879425356.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.988 kcal (2) G-P(sol) polarization free energy of solvation -30.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds