Wall clock time and date at job start Tue Mar 31 2020 20:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34638 * 116.99742 * 2 1 4 4 O 1.21514 * 120.00079 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99915 * 179.97438 * 3 2 1 6 6 C 1.46930 * 120.62800 * 179.97438 * 5 3 2 7 7 C 1.53194 * 108.77686 * 233.59081 * 6 5 3 8 8 C 1.53043 * 109.31111 * 305.36942 * 7 6 5 9 9 C 1.50709 * 109.45524 * 181.38366 * 8 7 6 10 10 O 1.21279 * 120.00080 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99692 * 180.02562 * 9 8 7 12 12 C 1.46497 * 120.00015 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.46733 * 325.00143 * 12 11 9 14 14 C 1.50694 * 109.47115 * 204.99781 * 12 11 9 15 15 H 1.08000 * 120.00563 * 359.97438 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.53000 * 109.47145 * 84.99707 * 12 11 9 23 23 F 1.39903 * 109.47440 * 180.02562 * 22 12 11 24 24 F 1.39899 * 109.47255 * 300.00046 * 22 12 11 25 25 F 1.39900 * 109.47102 * 59.99912 * 22 12 11 26 26 C 1.53042 * 109.53882 * 61.36690 * 8 7 6 27 27 C 1.46921 * 120.63239 * 359.97438 * 5 3 2 28 28 H 1.09001 * 109.47327 * 59.99840 * 1 2 3 29 29 H 1.09001 * 109.47015 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47520 * 299.99852 * 1 2 3 31 31 H 1.08999 * 109.58319 * 113.80732 * 6 5 3 32 32 H 1.08994 * 109.70592 * 353.45499 * 6 5 3 33 33 H 1.09001 * 109.49444 * 185.41978 * 7 6 5 34 34 H 1.08998 * 109.52292 * 65.33427 * 7 6 5 35 35 H 1.09001 * 109.46108 * 301.35564 * 8 7 6 36 36 H 0.97005 * 120.00104 * 359.97438 * 11 9 8 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 38 38 H 1.09002 * 109.49588 * 58.58236 * 26 8 7 39 39 H 1.09002 * 109.49790 * 178.67896 * 26 8 7 40 40 H 1.09003 * 109.59071 * 246.19611 * 27 5 3 41 41 H 1.09004 * 109.58715 * 6.47553 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0631 1.1997 0.0000 4 8 1.4013 2.2187 0.0005 5 7 3.4091 1.2702 0.0005 6 6 4.0904 2.5720 0.0000 7 6 5.0823 2.6090 -1.1669 8 6 6.0240 1.4066 -1.0689 9 6 7.0229 1.4582 -2.1962 10 8 6.9856 2.3670 -2.9984 11 7 7.9577 0.4943 -2.3129 12 6 8.9291 0.5446 -3.4083 13 1 8.4520 0.9551 -4.2983 14 6 9.4276 -0.8468 -3.7020 15 1 9.0582 -1.6849 -3.1296 16 6 10.3562 -1.0499 -4.7008 17 7 10.8065 -0.0294 -5.3975 18 14 10.9747 -2.7747 -5.0643 19 1 12.1736 -3.0559 -4.2343 20 1 9.9101 -3.7597 -4.7458 21 1 11.3322 -2.8795 -6.5018 22 6 10.1070 1.4339 -3.0050 23 9 11.0344 1.4825 -4.0513 24 9 9.6442 2.7257 -2.7324 25 9 10.7192 0.9071 -1.8626 26 6 5.2132 0.1122 -1.1650 27 6 4.2228 0.0470 0.0017 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 4.6267 2.7041 0.9397 32 1 3.3577 3.3703 -0.1178 33 1 5.6628 3.5304 -1.1219 34 1 4.5371 2.5681 -2.1099 35 1 6.5510 1.4348 -0.1152 36 1 7.9878 -0.2325 -1.6710 37 1 11.4600 -0.1723 -6.0999 38 1 4.6663 0.0946 -2.1078 39 1 5.8869 -0.7434 -1.1187 40 1 4.7700 -0.0271 0.9415 41 1 3.5757 -0.8225 -0.1139 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928801105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:15 Heat of formation + Delta-G solvation = -278.365184 kcal Electronic energy + Delta-G solvation = -30886.925407 eV Core-core repulsion = 25965.680878 eV Total energy + Delta-G solvation = -4921.244530 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.40461 -48.03912 -47.71695 -41.79337 -40.86763 -38.80659 -37.27794 -36.49244 -34.57511 -34.03878 -32.17892 -30.34225 -28.69520 -26.85653 -26.47831 -24.36639 -23.78063 -22.75367 -21.50817 -20.76767 -19.49301 -19.07516 -18.84795 -18.65798 -18.23235 -18.01814 -17.57502 -17.39432 -16.83900 -16.17048 -15.88482 -15.64785 -15.32477 -15.09876 -15.01493 -14.93221 -14.66266 -14.46128 -14.39870 -14.30291 -14.22431 -14.01723 -13.86423 -13.69996 -13.40176 -13.08726 -12.93110 -12.85312 -12.71844 -12.63472 -12.29188 -12.19471 -11.89148 -11.77983 -11.69104 -11.54960 -11.48535 -10.72915 -10.68110 -10.03054 -9.82526 -8.20157 -6.50895 1.15425 1.48155 1.48510 1.59994 1.67567 1.71559 2.21931 2.41237 2.56257 2.93619 2.95642 3.57220 3.71047 3.77249 3.82487 3.89454 4.02782 4.17074 4.29631 4.34264 4.36984 4.38683 4.40003 4.66768 4.70003 4.71808 4.78742 4.84450 4.92563 4.99940 5.14205 5.27262 5.30102 5.44323 5.45551 5.57166 5.66855 6.24203 6.54557 6.76711 7.17303 7.18883 7.41328 8.72416 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.003010 C = 0.002720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.611679 B = 9299.571455 C =10291.042875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.644 3.356 4 O -0.611 6.611 5 N -0.592 5.592 6 C 0.134 3.866 7 C -0.109 4.109 8 C -0.095 4.095 9 C 0.504 3.496 10 O -0.582 6.582 11 N -0.703 5.703 12 C 0.251 3.749 13 H 0.043 0.957 14 C -0.559 4.559 15 H 0.096 0.904 16 C 0.013 3.987 17 N -0.877 5.877 18 Si 0.982 3.018 19 H -0.274 1.274 20 H -0.254 1.254 21 H -0.286 1.286 22 C 0.413 3.587 23 F -0.153 7.153 24 F -0.220 7.220 25 F -0.202 7.202 26 C -0.122 4.122 27 C 0.118 3.882 28 H 0.055 0.945 29 H 0.136 0.864 30 H 0.062 0.938 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.132 0.868 36 H 0.415 0.585 37 H 0.267 0.733 38 H 0.054 0.946 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.576 -4.582 13.744 19.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.284 6.284 3 C 0.398 3.602 4 O -0.503 6.503 5 N -0.332 5.332 6 C 0.013 3.987 7 C -0.148 4.148 8 C -0.116 4.116 9 C 0.291 3.709 10 O -0.461 6.461 11 N -0.353 5.353 12 C 0.144 3.856 13 H 0.060 0.940 14 C -0.596 4.596 15 H 0.114 0.886 16 C -0.192 4.192 17 N -0.511 5.511 18 Si 0.806 3.194 19 H -0.200 1.200 20 H -0.177 1.177 21 H -0.212 1.212 22 C 0.357 3.643 23 F -0.134 7.134 24 F -0.202 7.202 25 F -0.184 7.184 26 C -0.160 4.160 27 C -0.004 4.004 28 H 0.074 0.926 29 H 0.154 0.846 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.067 0.933 35 H 0.150 0.850 36 H 0.252 0.748 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.732 -3.603 13.025 19.266 hybrid contribution 0.790 -0.212 -0.564 0.993 sum -12.942 -3.814 12.460 18.366 Atomic orbital electron populations 1.23478 0.73016 1.05570 1.02378 1.86237 1.25566 1.29858 1.86729 1.18275 0.83681 0.82208 0.75996 1.90959 1.65158 1.36225 1.57982 1.47135 1.01574 1.09708 1.74823 1.21704 0.94555 0.83259 0.99163 1.21676 0.96513 0.98098 0.98480 1.21365 0.94583 0.98020 0.97624 1.21509 0.81731 0.80818 0.86803 1.90687 1.73955 1.36164 1.45335 1.45937 1.31031 1.27792 1.30586 1.19272 0.83154 0.95975 0.87214 0.93953 1.21256 1.27008 0.91079 1.20224 0.88583 1.26020 0.95682 1.02122 0.95382 1.70544 1.28934 1.31469 1.20127 0.85176 0.78872 0.78243 0.77151 1.20004 1.17729 1.21200 1.23343 0.88033 0.78455 0.74510 1.93375 1.68395 1.95815 1.55823 1.93059 1.89092 1.43765 1.94271 1.92986 1.85520 1.86666 1.53190 1.21937 0.98284 0.96389 0.99431 1.21938 0.93311 0.85827 0.99298 0.92617 0.84580 0.91899 0.87695 0.89574 0.89973 0.93256 0.84994 0.74762 0.92300 0.92672 0.87488 0.87546 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.67 10.56 113.37 1.20 1.87 16 2 O -0.37 -7.24 9.20 -55.48 -0.51 -7.75 16 3 C 0.64 15.55 8.43 129.79 1.09 16.65 16 4 O -0.61 -18.70 15.55 19.80 0.31 -18.39 16 5 N -0.59 -11.75 2.97 -949.28 -2.82 -14.57 16 6 C 0.13 2.59 6.43 86.36 0.56 3.14 16 7 C -0.11 -2.61 4.65 30.67 0.14 -2.47 16 8 C -0.09 -2.16 2.49 -11.51 -0.03 -2.19 16 9 C 0.50 17.93 6.69 87.66 0.59 18.52 16 10 O -0.58 -26.65 14.55 -3.02 -0.04 -26.69 16 11 N -0.70 -25.91 4.87 -446.10 -2.17 -28.08 16 12 C 0.25 12.13 2.21 44.24 0.10 12.23 16 13 H 0.04 2.41 7.58 -2.39 -0.02 2.39 16 14 C -0.56 -27.07 8.47 25.60 0.22 -26.86 16 15 H 0.10 4.18 7.74 -2.91 -0.02 4.16 16 16 C 0.01 0.66 5.20 84.66 0.44 1.10 16 17 N -0.88 -48.08 9.50 21.45 0.20 -47.88 16 18 Si 0.98 39.41 29.54 68.60 2.03 41.43 16 19 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 20 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.29 -11.57 7.11 99.48 0.71 -10.86 16 22 C 0.41 20.86 2.81 71.98 0.20 21.06 16 23 F -0.15 -8.54 12.91 44.97 0.58 -7.96 16 24 F -0.22 -11.09 15.68 44.97 0.70 -10.39 16 25 F -0.20 -9.50 16.94 44.97 0.76 -8.74 16 26 C -0.12 -2.20 5.27 30.67 0.16 -2.04 16 27 C 0.12 1.64 6.45 86.36 0.56 2.20 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.14 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.09 1.93 7.01 -2.39 -0.02 1.91 16 33 H 0.08 2.08 8.07 -2.39 -0.02 2.07 16 34 H 0.05 1.44 8.13 -2.39 -0.02 1.42 16 35 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.42 12.17 7.94 -92.70 -0.74 11.43 16 37 H 0.27 13.96 8.31 -92.71 -0.77 13.19 16 38 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.56 7.52 -2.39 -0.02 1.54 16 40 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.11 1.34 6.93 -2.38 -0.02 1.32 16 Total: -1.00 -72.49 348.88 4.61 -67.88 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.35 Total: 17.94 kcal Atomic # 6 Polarization: 37.98 SS G_CDS: 5.22 Total: 43.20 kcal Atomic # 7 Polarization: -85.74 SS G_CDS: -4.79 Total: -90.53 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -0.25 Total: -52.83 kcal Atomic # 9 Polarization: -29.14 SS G_CDS: 2.05 Total: -27.09 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.43 kcal Total: -72.49 4.61 -67.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.485 kcal (2) G-P(sol) polarization free energy of solvation -72.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -282.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -278.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds