Wall clock time and date at job start Tue Mar 31 2020 20:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 C 1.50701 * 109.45322 * 181.24287 * 8 7 6 10 10 O 1.21287 * 120.00040 * 239.78637 * 9 8 7 11 11 N 1.34774 * 120.00230 * 59.79291 * 9 8 7 12 12 C 1.46495 * 120.00468 * 180.02562 * 11 9 8 13 13 H 1.09003 * 109.47037 * 34.99439 * 12 11 9 14 14 C 1.50698 * 109.47104 * 154.99651 * 12 11 9 15 15 H 1.07994 * 120.00468 * 359.97438 * 14 12 11 16 16 C 1.37881 * 119.99615 * 180.02562 * 14 12 11 17 17 N 1.31515 * 119.99984 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99991 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47557 * 89.99232 * 18 16 14 20 20 H 1.48500 * 109.47151 * 209.99839 * 18 16 14 21 21 H 1.48504 * 109.46947 * 329.99348 * 18 16 14 22 22 C 1.52998 * 109.46767 * 274.99542 * 12 11 9 23 23 F 1.39909 * 109.47147 * 60.00104 * 22 12 11 24 24 F 1.39898 * 109.47146 * 179.97438 * 22 12 11 25 25 F 1.39900 * 109.47491 * 300.00045 * 22 12 11 26 26 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 27 27 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 28 28 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 29 29 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 30 30 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 32 32 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 33 33 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 34 34 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 35 35 H 1.09008 * 109.33938 * 301.13543 * 8 7 6 36 36 H 0.97011 * 119.99581 * 359.97438 * 11 9 8 37 37 H 0.97001 * 119.99690 * 180.02562 * 17 16 14 38 38 H 1.09002 * 109.49876 * 178.74890 * 26 8 7 39 39 H 1.09001 * 109.49731 * 58.65147 * 26 8 7 40 40 H 1.08998 * 109.58787 * 246.20220 * 27 5 3 41 41 H 1.09007 * 109.58600 * 6.48533 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 6 7.0231 1.4595 -2.1960 10 8 7.0808 0.5513 -2.9978 11 7 7.8524 2.5154 -2.3130 12 6 8.8231 2.5667 -3.4090 13 1 8.3909 2.1088 -4.2988 14 6 9.1738 4.0025 -3.7027 15 1 8.7188 4.7975 -3.1306 16 6 10.0748 4.3014 -4.7027 17 7 10.6284 3.3333 -5.3999 18 14 10.5101 6.0811 -5.0664 19 1 11.6743 6.4853 -4.2378 20 1 10.8528 6.2230 -6.5044 21 1 9.3492 6.9500 -4.7462 22 6 10.0874 1.8049 -3.0064 23 9 9.7618 0.4718 -2.7337 24 9 11.0142 1.8533 -4.0533 25 9 10.6421 2.3924 -1.8644 26 6 5.2133 0.1129 -1.1659 27 6 4.2229 0.0467 0.0017 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.3564 3.3686 -0.1174 32 1 4.6248 2.7042 0.9419 33 1 4.5408 2.5729 -2.1077 34 1 5.6649 3.5333 -1.1155 35 1 6.5512 1.4348 -0.1150 36 1 7.8060 3.2420 -1.6718 37 1 11.2626 3.5436 -6.1031 38 1 5.8869 -0.7428 -1.1202 39 1 4.6664 0.0961 -2.1086 40 1 4.7699 -0.0274 0.9415 41 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928801106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:20 Heat of formation + Delta-G solvation = -256.380357 kcal Electronic energy + Delta-G solvation = -30875.603745 eV Core-core repulsion = 25955.312549 eV Total energy + Delta-G solvation = -4920.291196 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.38448 -46.04137 -45.64603 -40.86141 -39.55419 -37.76609 -36.31516 -34.73145 -33.27015 -32.50198 -31.25114 -28.74654 -27.84530 -25.77897 -24.58617 -23.47488 -22.43911 -21.29606 -20.24958 -19.61607 -18.36691 -17.58171 -17.19695 -16.88093 -16.72843 -16.66311 -16.41935 -15.73735 -15.06805 -15.02816 -14.70071 -14.59128 -14.41234 -13.98101 -13.65098 -13.46307 -13.16551 -12.97163 -12.76575 -12.51907 -12.46870 -12.43166 -12.31605 -12.25602 -12.03198 -11.90970 -11.82077 -11.42439 -11.20042 -10.98643 -10.94691 -10.88853 -10.83408 -10.70627 -10.55379 -10.42594 -9.69642 -9.27061 -8.92285 -8.76249 -8.30482 -6.27199 -4.51491 1.95649 2.62884 3.13385 3.17396 3.23042 3.25022 3.66540 3.75580 4.17838 4.51560 4.56891 4.69684 4.82725 4.89756 4.90360 4.90957 4.98253 5.09898 5.18693 5.28507 5.30362 5.52502 5.57422 5.58071 5.69015 5.82191 5.83733 5.85291 6.02373 6.11923 6.18180 6.25363 6.29430 6.90040 7.11337 7.12652 7.42953 7.59578 8.07535 8.27388 8.46003 8.83881 9.16751 10.64400 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.002940 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.115239 B = 9520.145263 C =10347.906931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.371 6.371 3 C 0.650 3.350 4 O -0.576 6.576 5 N -0.593 5.593 6 C 0.129 3.871 7 C -0.127 4.127 8 C -0.108 4.108 9 C 0.509 3.491 10 O -0.535 6.535 11 N -0.711 5.711 12 C 0.245 3.755 13 H 0.084 0.916 14 C -0.553 4.553 15 H 0.077 0.923 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.417 3.583 23 F -0.218 7.218 24 F -0.137 7.137 25 F -0.210 7.210 26 C -0.114 4.114 27 C 0.112 3.888 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.398 0.602 37 H 0.268 0.732 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 -4.359 11.488 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.465 6.465 5 N -0.333 5.333 6 C 0.008 3.992 7 C -0.166 4.166 8 C -0.129 4.129 9 C 0.294 3.706 10 O -0.411 6.411 11 N -0.360 5.360 12 C 0.139 3.861 13 H 0.102 0.898 14 C -0.590 4.590 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.473 5.473 18 Si 0.741 3.259 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.195 1.195 22 C 0.361 3.639 23 F -0.200 7.200 24 F -0.118 7.118 25 F -0.191 7.191 26 C -0.153 4.153 27 C -0.010 4.010 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.232 0.768 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -13.048 -4.805 10.727 17.561 hybrid contribution 0.566 1.082 0.156 1.231 sum -12.482 -3.723 10.883 16.974 Atomic orbital electron populations 1.23183 0.74563 1.03391 1.02678 1.86234 1.24034 1.31087 1.87083 1.18032 0.83202 0.82098 0.76270 1.90984 1.64267 1.34935 1.56348 1.46977 1.01852 1.08861 1.75616 1.21684 0.95269 0.83605 0.98659 1.21971 0.97096 0.97990 0.99530 1.21335 0.95739 0.96905 0.98940 1.20463 0.81536 0.82390 0.86197 1.90702 1.70309 1.36892 1.43230 1.46092 1.36515 1.21962 1.31417 1.19711 0.81691 0.97781 0.86909 0.89801 1.20874 1.28646 0.89260 1.20188 0.90447 1.25089 0.94917 0.98869 0.95535 1.70398 1.26438 1.31038 1.19381 0.86217 0.78970 0.82936 0.77757 1.20210 1.20800 1.19451 1.23153 0.89989 0.76168 0.74636 1.93068 1.92994 1.39668 1.94295 1.93405 1.68088 1.95406 1.54905 1.92987 1.87897 1.84488 1.53775 1.21742 0.97476 0.97286 0.98752 1.21849 0.93755 0.86355 0.99085 0.91953 0.91863 0.88026 0.88266 0.90577 0.90521 0.89235 0.88455 0.76812 0.92093 0.89400 0.90516 0.90888 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -4.02 9.20 -40.31 -0.37 -4.39 16 3 C 0.65 8.28 8.43 54.06 0.46 8.73 16 4 O -0.58 -8.82 15.55 -19.28 -0.30 -9.12 16 5 N -0.59 -6.54 2.97 -178.53 -0.53 -7.07 16 6 C 0.13 1.28 6.43 -3.71 -0.02 1.26 16 7 C -0.13 -1.40 5.28 -26.59 -0.14 -1.54 16 8 C -0.11 -1.34 2.48 -91.71 -0.23 -1.57 16 9 C 0.51 9.19 6.69 -10.99 -0.07 9.11 16 10 O -0.53 -11.82 14.55 5.55 0.08 -11.74 16 11 N -0.71 -13.55 4.87 -54.93 -0.27 -13.82 16 12 C 0.24 5.88 2.21 -69.09 -0.15 5.73 16 13 H 0.08 2.28 7.58 -51.93 -0.39 1.89 16 14 C -0.55 -13.71 8.46 -34.44 -0.29 -14.00 16 15 H 0.08 1.80 7.74 -52.49 -0.41 1.39 16 16 C 0.06 1.66 5.20 -17.82 -0.09 1.56 16 17 N -0.84 -22.72 9.50 55.43 0.53 -22.19 16 18 Si 0.91 19.78 29.54 -169.99 -5.02 14.76 16 19 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 C 0.42 10.44 2.81 37.16 0.10 10.55 16 23 F -0.22 -5.41 15.68 2.25 0.04 -5.37 16 24 F -0.14 -3.74 12.91 2.25 0.03 -3.71 16 25 F -0.21 -5.03 16.94 2.25 0.04 -5.00 16 26 C -0.11 -1.34 4.66 -26.59 -0.12 -1.46 16 27 C 0.11 1.05 6.45 -3.68 -0.02 1.03 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 1.07 7.00 -51.93 -0.36 0.71 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.88 7.53 -51.93 -0.39 0.49 16 35 H 0.10 1.02 8.14 -51.92 -0.42 0.60 16 36 H 0.40 6.42 7.93 -40.82 -0.32 6.10 16 37 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.09 1.06 8.07 -51.93 -0.42 0.65 16 39 H 0.08 1.04 8.13 -51.93 -0.42 0.61 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.84 6.93 -51.92 -0.36 0.48 16 LS Contribution 348.88 15.07 5.26 5.26 Total: -1.00 -32.32 348.88 -5.22 -37.53 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -5.17 Total: 3.97 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: 0.48 Total: 20.90 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.27 Total: -43.08 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.59 Total: -25.25 kcal Atomic # 9 Polarization: -14.19 SS G_CDS: 0.10 Total: -14.08 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.76 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.32 -5.22 -37.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -218.846 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -251.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -256.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds