Wall clock time and date at job start Tue Mar 31 2020 20:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99610 * 2 1 4 4 C 1.52998 * 109.46883 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47244 * 64.99987 * 4 3 2 6 6 C 1.46766 * 124.34565 * 89.99703 * 5 4 3 7 7 C 1.54483 * 105.47105 * 163.00930 * 6 5 4 8 8 H 1.09005 * 110.96456 * 267.25820 * 7 6 5 9 9 C 1.50702 * 110.96704 * 143.53799 * 7 6 5 10 10 O 1.21279 * 120.00201 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99614 * 180.02562 * 9 7 6 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.50703 * 109.47155 * 154.99862 * 12 11 9 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 12 11 16 16 C 1.37873 * 119.99873 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00433 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99975 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47197 * 89.99842 * 18 16 14 20 20 H 1.48495 * 109.47693 * 210.00055 * 18 16 14 21 21 H 1.48508 * 109.46868 * 330.00146 * 18 16 14 22 22 C 1.53000 * 109.47023 * 274.99565 * 12 11 9 23 23 F 1.39898 * 109.46890 * 60.00370 * 22 12 11 24 24 F 1.39904 * 109.47059 * 179.97438 * 22 12 11 25 25 F 1.39895 * 109.47411 * 300.00052 * 22 12 11 26 26 C 1.54625 * 101.76459 * 25.41591 * 7 6 5 27 27 C 1.34414 * 124.35359 * 270.02851 * 5 4 3 28 28 O 1.21282 * 124.94127 * 0.37942 * 27 5 4 29 29 H 1.09009 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47650 * 299.99429 * 1 2 3 31 31 H 1.08995 * 109.47489 * 60.00004 * 1 2 3 32 32 H 1.09000 * 109.47102 * 60.00462 * 3 2 1 33 33 H 1.08999 * 109.47232 * 300.00265 * 3 2 1 34 34 H 1.09000 * 109.47259 * 305.00700 * 4 3 2 35 35 H 1.08992 * 109.47352 * 185.00360 * 4 3 2 36 36 H 1.08999 * 110.24738 * 44.01255 * 6 5 4 37 37 H 1.09001 * 110.32246 * 282.04777 * 6 5 4 38 38 H 0.97004 * 119.99983 * 359.97438 * 11 9 7 39 39 H 0.97001 * 120.00323 * 179.97438 * 17 16 14 40 40 H 1.09006 * 110.48456 * 93.88478 * 26 7 6 41 41 H 1.08998 * 110.48413 * 216.51923 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.3129 1.3080 -2.4705 7 6 5.1175 0.3218 -3.3461 8 1 6.1879 0.4267 -3.1686 9 6 4.7947 0.5098 -4.8060 10 8 3.9924 1.3534 -5.1460 11 7 5.3969 -0.2602 -5.7339 12 6 5.0827 -0.0779 -7.1531 13 1 4.9012 0.9783 -7.3523 14 6 6.2419 -0.5549 -7.9896 15 1 7.1243 -0.9544 -7.5118 16 6 6.1756 -0.4823 -9.3649 17 7 5.1005 0.0027 -9.9467 18 14 7.6128 -1.0730 -10.4017 19 1 7.4365 -2.5134 -10.7174 20 1 7.6663 -0.2926 -11.6640 21 1 8.8781 -0.8826 -9.6480 22 6 3.8323 -0.8857 -7.5065 23 9 2.7562 -0.4429 -6.7300 24 9 3.5319 -0.7111 -8.8617 25 9 4.0652 -2.2413 -7.2509 26 6 4.6026 -1.0444 -2.8368 27 6 4.1250 -0.7598 -1.4299 28 8 3.9077 -1.6035 -0.5861 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8507 0.5685 0.8426 35 1 3.9784 2.1765 0.0903 36 1 4.9218 2.1783 -2.2258 37 1 3.4047 1.6171 -2.9879 38 1 6.0383 -0.9352 -5.4619 39 1 5.0540 0.0541 -10.9142 40 1 3.7773 -1.3959 -3.4561 41 1 5.4103 -1.7761 -2.8249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:00 Heat of formation + Delta-G solvation = -247.203746 kcal Electronic energy + Delta-G solvation = -31065.759203 eV Core-core repulsion = 26145.865935 eV Total energy + Delta-G solvation = -4919.893268 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.40464 -46.06077 -45.66554 -40.68813 -38.88682 -37.85890 -36.13247 -34.76265 -33.45303 -32.57660 -29.66733 -28.28698 -27.60438 -26.41749 -24.66667 -23.84043 -22.70712 -21.28261 -19.83712 -19.38792 -17.86117 -16.99385 -16.98520 -16.83162 -16.69392 -16.60839 -16.07860 -15.73348 -15.39713 -15.28096 -14.91548 -14.71374 -14.32696 -14.08637 -13.53566 -13.27675 -13.11829 -12.98513 -12.89734 -12.77248 -12.56980 -12.45519 -12.33753 -12.11311 -12.04291 -11.94547 -11.87076 -11.50492 -11.31350 -11.28459 -11.18984 -10.93190 -10.85110 -10.46208 -9.90407 -9.76035 -9.72836 -9.31490 -8.79392 -8.71888 -8.38343 -6.29460 -4.54081 2.68536 2.86747 3.00200 3.15640 3.22008 3.23889 3.62683 3.64369 4.15517 4.29548 4.43861 4.49704 4.81892 4.86662 4.88581 4.91659 4.93314 5.07718 5.16056 5.22182 5.24031 5.32309 5.45024 5.55205 5.56846 5.64977 5.77619 5.78802 5.81203 5.95226 6.14838 6.46346 6.83937 7.01198 7.04328 7.11673 7.38701 7.56831 8.17890 8.25055 8.42427 8.72080 9.14199 10.61950 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.003100 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.504223 B = 9030.521279 C = 9444.215074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.039 3.961 4 C 0.131 3.869 5 N -0.619 5.619 6 C 0.117 3.883 7 C -0.123 4.123 8 H 0.116 0.884 9 C 0.517 3.483 10 O -0.531 6.531 11 N -0.706 5.706 12 C 0.245 3.755 13 H 0.086 0.914 14 C -0.553 4.553 15 H 0.078 0.922 16 C 0.065 3.935 17 N -0.839 5.839 18 Si 0.915 3.085 19 H -0.276 1.276 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.416 3.584 23 F -0.218 7.218 24 F -0.136 7.136 25 F -0.208 7.208 26 C -0.145 4.145 27 C 0.527 3.473 28 O -0.520 6.520 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.400 0.600 39 H 0.269 0.731 40 H 0.109 0.891 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.531 3.438 15.287 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.039 4.039 4 C 0.009 3.991 5 N -0.354 5.354 6 C -0.006 4.006 7 C -0.145 4.145 8 H 0.134 0.866 9 C 0.301 3.699 10 O -0.408 6.408 11 N -0.355 5.355 12 C 0.139 3.861 13 H 0.104 0.896 14 C -0.590 4.590 15 H 0.096 0.904 16 C -0.144 4.144 17 N -0.472 5.472 18 Si 0.742 3.258 19 H -0.202 1.202 20 H -0.208 1.208 21 H -0.194 1.194 22 C 0.360 3.640 23 F -0.200 7.200 24 F -0.118 7.118 25 F -0.190 7.190 26 C -0.186 4.186 27 C 0.314 3.686 28 O -0.395 6.395 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.235 0.765 39 H 0.079 0.921 40 H 0.128 0.872 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.262 3.506 15.333 15.891 hybrid contribution 0.414 -0.474 -0.670 0.919 sum -1.847 3.032 14.664 15.088 Atomic orbital electron populations 1.22727 0.81384 1.02768 0.99604 1.88062 1.19271 1.26757 1.95276 1.23032 0.94567 0.85788 1.00527 1.21383 0.92187 0.99154 0.86421 1.48188 1.67414 1.07401 1.12417 1.21986 1.00722 0.93956 0.83899 1.22227 1.02440 0.96289 0.93497 0.86623 1.20014 0.81203 0.81785 0.86856 1.90711 1.33900 1.34454 1.81734 1.46049 1.44235 1.37894 1.07311 1.19762 0.90969 0.97958 0.77387 0.89609 1.20871 1.01006 1.46232 0.90923 0.90366 1.25081 0.96634 0.94684 0.97980 1.70393 1.25277 1.40504 1.11026 0.86209 0.81463 0.78853 0.79306 1.20183 1.20801 1.19450 1.23148 0.86354 0.78345 0.76159 1.93068 1.61092 1.89401 1.76461 1.93410 1.93740 1.94604 1.30005 1.92995 1.94803 1.36964 1.94268 1.22344 1.04005 0.97239 0.94966 1.20659 0.76467 0.82121 0.89314 1.90716 1.51066 1.49094 1.48643 0.89712 0.94374 0.94163 0.92500 0.92839 0.89189 0.88737 0.89923 0.89022 0.76539 0.92058 0.87232 0.87221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.38 -4.98 10.22 -35.23 -0.36 -5.34 16 3 C 0.04 0.39 6.28 37.16 0.23 0.62 16 4 C 0.13 1.25 6.33 -4.04 -0.03 1.23 16 5 N -0.62 -7.42 2.90 -172.42 -0.50 -7.92 16 6 C 0.12 1.35 6.71 -3.12 -0.02 1.32 16 7 C -0.12 -1.50 3.54 -90.14 -0.32 -1.82 16 8 H 0.12 1.10 8.14 -51.93 -0.42 0.68 16 9 C 0.52 8.87 6.59 -10.98 -0.07 8.80 16 10 O -0.53 -11.05 14.08 5.56 0.08 -10.97 16 11 N -0.71 -12.99 4.99 -54.93 -0.27 -13.27 16 12 C 0.24 5.72 2.21 -69.08 -0.15 5.57 16 13 H 0.09 2.25 7.58 -51.93 -0.39 1.85 16 14 C -0.55 -13.44 8.47 -34.44 -0.29 -13.73 16 15 H 0.08 1.78 7.74 -52.48 -0.41 1.38 16 16 C 0.07 1.64 5.20 -17.82 -0.09 1.55 16 17 N -0.84 -22.32 9.50 55.43 0.53 -21.79 16 18 Si 0.92 19.48 29.54 -169.99 -5.02 14.46 16 19 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 C 0.42 10.25 2.81 37.16 0.10 10.36 16 23 F -0.22 -5.32 15.68 2.25 0.04 -5.28 16 24 F -0.14 -3.68 12.91 2.25 0.03 -3.65 16 25 F -0.21 -4.97 16.94 2.25 0.04 -4.93 16 26 C -0.15 -1.85 6.41 -26.74 -0.17 -2.02 16 27 C 0.53 7.66 7.72 -10.86 -0.08 7.57 16 28 O -0.52 -9.36 17.45 5.56 0.10 -9.26 16 29 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.94 7.93 -51.93 -0.41 0.53 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.09 1.24 6.96 -51.93 -0.36 0.88 16 38 H 0.40 6.27 8.54 -40.82 -0.35 5.92 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 40 H 0.11 1.58 7.89 -51.93 -0.41 1.17 16 41 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -32.54 357.01 -5.02 -37.56 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -5.27 Total: 4.14 kcal Atomic # 6 Polarization: 20.65 SS G_CDS: 0.22 Total: 20.87 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: -0.25 Total: -42.98 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.18 Total: -25.56 kcal Atomic # 9 Polarization: -13.96 SS G_CDS: 0.10 Total: -13.86 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.54 -5.02 -37.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -209.644 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -247.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds