Wall clock time and date at job start Tue Mar 31 2020 20:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99610 * 2 1 4 4 C 1.52998 * 109.46883 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47244 * 64.99987 * 4 3 2 6 6 C 1.46766 * 124.34565 * 89.99703 * 5 4 3 7 7 C 1.54483 * 105.47105 * 163.00930 * 6 5 4 8 8 H 1.09005 * 110.96456 * 267.25820 * 7 6 5 9 9 C 1.50702 * 110.96704 * 143.53799 * 7 6 5 10 10 O 1.21279 * 120.00201 * 359.97438 * 9 7 6 11 11 N 1.34779 * 119.99614 * 180.02562 * 9 7 6 12 12 C 1.46500 * 119.99793 * 179.97438 * 11 9 7 13 13 H 1.09002 * 109.47092 * 34.99824 * 12 11 9 14 14 C 1.50703 * 109.47155 * 154.99862 * 12 11 9 15 15 H 1.08003 * 119.99742 * 0.02562 * 14 12 11 16 16 C 1.37873 * 119.99873 * 179.97438 * 14 12 11 17 17 N 1.31509 * 120.00433 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99975 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.47197 * 89.99842 * 18 16 14 20 20 H 1.48495 * 109.47693 * 210.00055 * 18 16 14 21 21 H 1.48508 * 109.46868 * 330.00146 * 18 16 14 22 22 C 1.53000 * 109.47023 * 274.99565 * 12 11 9 23 23 F 1.39898 * 109.46890 * 60.00370 * 22 12 11 24 24 F 1.39904 * 109.47059 * 179.97438 * 22 12 11 25 25 F 1.39895 * 109.47411 * 300.00052 * 22 12 11 26 26 C 1.54625 * 101.76459 * 25.41591 * 7 6 5 27 27 C 1.34414 * 124.35359 * 270.02851 * 5 4 3 28 28 O 1.21282 * 124.94127 * 0.37942 * 27 5 4 29 29 H 1.09009 * 109.47169 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47650 * 299.99429 * 1 2 3 31 31 H 1.08995 * 109.47489 * 60.00004 * 1 2 3 32 32 H 1.09000 * 109.47102 * 60.00462 * 3 2 1 33 33 H 1.08999 * 109.47232 * 300.00265 * 3 2 1 34 34 H 1.09000 * 109.47259 * 305.00700 * 4 3 2 35 35 H 1.08992 * 109.47352 * 185.00360 * 4 3 2 36 36 H 1.08999 * 110.24738 * 44.01255 * 6 5 4 37 37 H 1.09001 * 110.32246 * 282.04777 * 6 5 4 38 38 H 0.97004 * 119.99983 * 359.97438 * 11 9 7 39 39 H 0.97001 * 120.00323 * 179.97438 * 17 16 14 40 40 H 1.09006 * 110.48456 * 93.88478 * 26 7 6 41 41 H 1.08998 * 110.48413 * 216.51923 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.3129 1.3080 -2.4705 7 6 5.1175 0.3218 -3.3461 8 1 6.1879 0.4267 -3.1686 9 6 4.7947 0.5098 -4.8060 10 8 3.9924 1.3534 -5.1460 11 7 5.3969 -0.2602 -5.7339 12 6 5.0827 -0.0779 -7.1531 13 1 4.9012 0.9783 -7.3523 14 6 6.2419 -0.5549 -7.9896 15 1 7.1243 -0.9544 -7.5118 16 6 6.1756 -0.4823 -9.3649 17 7 5.1005 0.0027 -9.9467 18 14 7.6128 -1.0730 -10.4017 19 1 7.4365 -2.5134 -10.7174 20 1 7.6663 -0.2926 -11.6640 21 1 8.8781 -0.8826 -9.6480 22 6 3.8323 -0.8857 -7.5065 23 9 2.7562 -0.4429 -6.7300 24 9 3.5319 -0.7111 -8.8617 25 9 4.0652 -2.2413 -7.2509 26 6 4.6026 -1.0444 -2.8368 27 6 4.1250 -0.7598 -1.4299 28 8 3.9077 -1.6035 -0.5861 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8507 0.5685 0.8426 35 1 3.9784 2.1765 0.0903 36 1 4.9218 2.1783 -2.2258 37 1 3.4047 1.6171 -2.9879 38 1 6.0383 -0.9352 -5.4619 39 1 5.0540 0.0541 -10.9142 40 1 3.7773 -1.3959 -3.4561 41 1 5.4103 -1.7761 -2.8249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928816448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:13:59 Heat of formation + Delta-G solvation = -270.654832 kcal Electronic energy + Delta-G solvation = -31066.776119 eV Core-core repulsion = 26145.865935 eV Total energy + Delta-G solvation = -4920.910184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.39791 -48.03563 -47.70938 -41.80407 -40.24580 -38.75210 -37.30860 -36.44109 -34.63398 -34.14648 -30.87488 -29.71230 -28.66711 -27.23678 -26.58081 -25.01453 -23.73460 -22.91335 -21.28936 -20.41501 -19.38612 -18.84700 -18.64653 -18.52818 -17.87590 -17.75179 -17.43701 -16.89411 -16.77476 -16.52137 -16.25026 -15.76084 -15.71304 -15.41930 -14.96098 -14.85706 -14.59866 -14.45647 -14.33384 -14.29332 -14.22485 -14.01209 -13.96646 -13.84248 -13.61051 -13.02765 -12.95009 -12.75779 -12.72796 -12.63328 -12.40945 -12.34817 -12.17682 -12.10099 -11.54378 -11.09539 -10.70725 -10.67426 -10.60466 -10.05148 -9.70035 -8.19459 -6.49703 1.48438 1.49622 1.56376 1.60540 1.62173 1.91298 2.24763 2.41724 2.55872 2.89937 2.96514 3.23735 3.41031 3.70805 3.82784 3.91537 3.92962 4.08552 4.14868 4.18550 4.28989 4.36992 4.45450 4.47311 4.52415 4.56905 4.65423 4.77864 4.79903 4.87748 4.95304 4.98436 5.42845 5.55625 5.57679 5.67476 6.08491 6.26118 6.55477 6.71485 7.17834 7.19490 7.35021 8.72867 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.003100 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.504223 B = 9030.521279 C = 9444.215074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.413 6.413 3 C 0.034 3.966 4 C 0.124 3.876 5 N -0.612 5.612 6 C 0.120 3.880 7 C -0.106 4.106 8 H 0.158 0.842 9 C 0.516 3.484 10 O -0.570 6.570 11 N -0.701 5.701 12 C 0.252 3.748 13 H 0.052 0.948 14 C -0.559 4.559 15 H 0.095 0.905 16 C 0.015 3.985 17 N -0.875 5.875 18 Si 0.980 3.020 19 H -0.277 1.277 20 H -0.285 1.285 21 H -0.254 1.254 22 C 0.411 3.589 23 F -0.220 7.220 24 F -0.152 7.152 25 F -0.204 7.204 26 C -0.142 4.142 27 C 0.520 3.480 28 O -0.562 6.562 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.039 0.961 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.267 0.733 40 H 0.089 0.911 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 3.887 16.624 17.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.332 6.332 3 C -0.044 4.044 4 C 0.003 3.997 5 N -0.345 5.345 6 C -0.003 4.003 7 C -0.127 4.127 8 H 0.175 0.825 9 C 0.303 3.697 10 O -0.449 6.449 11 N -0.351 5.351 12 C 0.145 3.855 13 H 0.070 0.930 14 C -0.596 4.596 15 H 0.113 0.887 16 C -0.190 4.190 17 N -0.509 5.509 18 Si 0.804 3.196 19 H -0.203 1.203 20 H -0.211 1.211 21 H -0.178 1.178 22 C 0.355 3.645 23 F -0.202 7.202 24 F -0.134 7.134 25 F -0.186 7.186 26 C -0.182 4.182 27 C 0.308 3.692 28 O -0.440 6.440 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.099 0.901 35 H 0.153 0.847 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.077 0.923 40 H 0.107 0.893 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.338 3.976 16.707 17.177 hybrid contribution -0.274 -0.570 -1.048 1.224 sum -0.612 3.406 15.659 16.037 Atomic orbital electron populations 1.22825 0.80278 1.03029 1.00637 1.88017 1.20786 1.28893 1.95531 1.23215 0.94646 0.84811 1.01688 1.21706 0.92249 1.00837 0.84893 1.48289 1.66233 1.06716 1.13258 1.22029 1.00242 0.94717 0.83328 1.22205 1.04910 0.96161 0.89443 0.82486 1.20812 0.79908 0.80454 0.88537 1.90701 1.35419 1.36024 1.82743 1.45904 1.44891 1.38757 1.05585 1.19331 0.90255 0.95687 0.80216 0.93011 1.21249 1.01543 1.45597 0.91203 0.88702 1.25964 0.98900 0.94743 0.99396 1.70526 1.27292 1.41957 1.11099 0.85208 0.78948 0.77887 0.77587 1.20317 1.21059 1.17800 1.23422 0.86848 0.78758 0.75503 1.93060 1.61316 1.89449 1.76361 1.93378 1.93917 1.94736 1.31340 1.92991 1.94775 1.36622 1.94173 1.22330 1.04107 0.98095 0.93682 1.20900 0.76199 0.82676 0.89378 1.90692 1.53130 1.50318 1.49898 0.89982 0.92189 0.94193 0.89719 0.93154 0.90076 0.84658 0.86277 0.91296 0.74712 0.92274 0.89266 0.84882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.41 -10.78 10.22 -148.98 -1.52 -12.30 16 3 C 0.03 0.61 6.28 71.98 0.45 1.07 16 4 C 0.12 2.09 6.33 86.38 0.55 2.64 16 5 N -0.61 -13.42 2.90 -817.99 -2.37 -15.79 16 6 C 0.12 2.44 6.71 86.83 0.58 3.02 16 7 C -0.11 -2.31 3.54 -10.48 -0.04 -2.34 16 8 H 0.16 2.23 8.14 -2.38 -0.02 2.21 16 9 C 0.52 17.11 6.59 87.66 0.58 17.69 16 10 O -0.57 -23.74 14.08 -3.03 -0.04 -23.78 16 11 N -0.70 -25.02 4.99 -446.09 -2.22 -27.24 16 12 C 0.25 11.83 2.21 44.25 0.10 11.93 16 13 H 0.05 2.80 7.58 -2.39 -0.02 2.78 16 14 C -0.56 -26.69 8.47 25.60 0.22 -26.47 16 15 H 0.10 4.11 7.74 -2.91 -0.02 4.09 16 16 C 0.02 0.76 5.20 84.65 0.44 1.20 16 17 N -0.87 -47.17 9.50 21.44 0.20 -46.96 16 18 Si 0.98 39.20 29.54 68.60 2.03 41.23 16 19 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 20 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 21 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 22 C 0.41 20.50 2.81 71.98 0.20 20.70 16 23 F -0.22 -10.92 15.68 44.97 0.70 -10.21 16 24 F -0.15 -8.41 12.91 44.97 0.58 -7.83 16 25 F -0.20 -9.67 16.94 44.97 0.76 -8.91 16 26 C -0.14 -3.39 6.41 30.59 0.20 -3.19 16 27 C 0.52 14.53 7.72 87.90 0.68 15.21 16 28 O -0.56 -20.11 17.45 -3.04 -0.05 -20.17 16 29 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.56 7.93 -2.39 -0.02 1.54 16 35 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.07 1.79 6.96 -2.39 -0.02 1.77 16 38 H 0.42 12.10 8.54 -92.71 -0.79 11.31 16 39 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 40 H 0.09 2.54 7.89 -2.38 -0.02 2.52 16 41 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -72.58 357.01 3.56 -69.02 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.29 Total: 19.69 kcal Atomic # 6 Polarization: 38.05 SS G_CDS: 5.20 Total: 43.25 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -4.39 Total: -89.99 kcal Atomic # 8 Polarization: -54.64 SS G_CDS: -1.62 Total: -56.25 kcal Atomic # 9 Polarization: -29.00 SS G_CDS: 2.05 Total: -26.95 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -72.58 3.56 -69.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -201.634 kcal (2) G-P(sol) polarization free energy of solvation -72.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -274.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -270.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds