Wall clock time and date at job start Tue Mar 31 2020 20:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42896 * 113.99563 * 2 1 4 4 C 1.53006 * 109.47138 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47204 * 64.99541 * 4 3 2 6 6 C 1.46761 * 124.35332 * 269.95707 * 5 4 3 7 7 C 1.54484 * 105.47259 * 197.03856 * 6 5 4 8 8 H 1.08998 * 111.00318 * 92.72145 * 7 6 5 9 9 C 1.50711 * 110.96550 * 216.46551 * 7 6 5 10 10 O 1.21275 * 120.00183 * 353.82909 * 9 7 6 11 11 N 1.34774 * 119.99470 * 173.83151 * 9 7 6 12 12 C 1.46505 * 119.99601 * 179.97438 * 11 9 7 13 13 H 1.08993 * 109.47285 * 35.00051 * 12 11 9 14 14 C 1.50700 * 109.46813 * 155.00356 * 12 11 9 15 15 H 1.07996 * 120.00078 * 85.12789 * 14 12 11 16 16 C 1.37875 * 119.99522 * 265.39682 * 14 12 11 17 17 N 1.31518 * 119.99799 * 184.72555 * 16 14 12 18 18 Si 1.86802 * 120.00294 * 4.72487 * 16 14 12 19 19 H 1.48505 * 109.46820 * 84.73025 * 18 16 14 20 20 H 1.48499 * 109.47132 * 204.73031 * 18 16 14 21 21 H 1.48501 * 109.47264 * 324.73175 * 18 16 14 22 22 C 1.53001 * 109.47074 * 275.00122 * 12 11 9 23 23 F 1.39901 * 109.47173 * 305.03356 * 22 12 11 24 24 F 1.39892 * 109.47129 * 65.03437 * 22 12 11 25 25 F 1.39899 * 109.47247 * 185.03626 * 22 12 11 26 26 C 1.54623 * 101.76648 * 334.57916 * 7 6 5 27 27 C 1.34422 * 124.34894 * 89.97837 * 5 4 3 28 28 O 1.21282 * 124.94007 * 359.60768 * 27 5 4 29 29 H 1.08998 * 109.46992 * 299.99683 * 1 2 3 30 30 H 1.09001 * 109.47358 * 60.00256 * 1 2 3 31 31 H 1.09006 * 109.46815 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47606 * 60.00273 * 3 2 1 33 33 H 1.09006 * 109.47387 * 299.99978 * 3 2 1 34 34 H 1.09003 * 109.46522 * 305.00358 * 4 3 2 35 35 H 1.08991 * 109.47566 * 185.00293 * 4 3 2 36 36 H 1.09000 * 110.24792 * 78.03621 * 6 5 4 37 37 H 1.08995 * 110.24525 * 316.03383 * 6 5 4 38 38 H 0.96996 * 120.00381 * 0.02562 * 11 9 7 39 39 H 0.97003 * 119.99596 * 180.02562 * 17 16 14 40 40 H 1.09002 * 110.48729 * 143.47462 * 26 7 6 41 41 H 1.09004 * 110.49113 * 265.99347 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.1390 -0.8808 -1.4482 7 6 5.0097 -1.0295 -2.7156 8 1 6.0666 -1.0980 -2.4577 9 6 4.5777 -2.2218 -3.5299 10 8 3.7311 -2.9758 -3.0991 11 7 5.1323 -2.4501 -4.7368 12 6 4.7127 -3.6095 -5.5282 13 1 3.6496 -3.7911 -5.3711 14 6 4.9658 -3.3387 -6.9889 15 1 5.9394 -3.5340 -7.4135 16 6 3.9559 -2.8365 -7.7819 17 7 4.1472 -2.6875 -9.0745 18 14 2.3158 -2.3676 -7.0203 19 1 2.3964 -0.9851 -6.4840 20 1 1.2522 -2.4362 -8.0543 21 1 1.9952 -3.3086 -5.9171 22 6 5.5102 -4.8402 -5.0920 23 9 6.8790 -4.5662 -5.1853 24 9 5.1878 -5.1599 -3.7688 25 9 5.1932 -5.9200 -5.9232 26 6 4.7068 0.2899 -3.4628 27 6 4.2824 1.2461 -2.3700 28 8 4.2275 2.4522 -2.4849 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8514 0.5683 0.8409 35 1 3.9785 2.1765 0.0890 36 1 3.1684 -1.3531 -1.5999 37 1 4.6443 -1.3229 -0.5896 38 1 5.8097 -1.8473 -5.0812 39 1 3.4368 -2.3338 -9.6323 40 1 5.6013 0.6578 -3.9653 41 1 3.8993 0.1452 -4.1806 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928816454.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:14:06 Heat of formation + Delta-G solvation = -271.935491 kcal Electronic energy + Delta-G solvation = -31091.760117 eV Core-core repulsion = 26170.794400 eV Total energy + Delta-G solvation = -4920.965717 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.09021 -46.61850 -46.56474 -40.75940 -38.96516 -37.98027 -36.21810 -34.87703 -33.50754 -32.58797 -29.93538 -28.70954 -27.64271 -26.49116 -25.01004 -23.77969 -22.87073 -21.20075 -19.88721 -19.44676 -18.27985 -17.56279 -17.33505 -17.10957 -16.80112 -16.63851 -16.48774 -15.97558 -15.47160 -15.43643 -15.15738 -14.83804 -14.37191 -13.90366 -13.70889 -13.50944 -13.49482 -13.30891 -13.13013 -13.04060 -12.85946 -12.78270 -12.70374 -12.68494 -12.42696 -12.28676 -12.12712 -11.95558 -11.51787 -11.35080 -11.27942 -11.11962 -10.79375 -10.15586 -10.05450 -9.86556 -9.82384 -9.49015 -9.02656 -8.78651 -8.51108 -6.58260 -4.73830 2.52466 2.82567 2.94348 3.04767 3.15193 3.20185 3.51070 3.58473 3.87176 4.02831 4.28684 4.38284 4.72724 4.78401 4.82081 4.89921 4.97576 5.00353 5.13215 5.15371 5.16486 5.17234 5.26844 5.29695 5.44180 5.50922 5.51521 5.57688 5.64621 5.80670 6.05482 6.27673 6.41442 6.83978 6.87532 7.02449 7.04065 7.78282 8.09691 8.18336 8.46873 8.67784 8.96646 10.50120 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012763 B = 0.003952 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.332970 B = 7082.870736 C = 7556.096517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.041 3.959 4 C 0.131 3.869 5 N -0.613 5.613 6 C 0.124 3.876 7 C -0.127 4.127 8 H 0.117 0.883 9 C 0.509 3.491 10 O -0.535 6.535 11 N -0.710 5.710 12 C 0.193 3.807 13 H 0.100 0.900 14 C -0.535 4.535 15 H 0.094 0.906 16 C 0.101 3.899 17 N -0.858 5.858 18 Si 0.869 3.131 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.254 1.254 22 C 0.439 3.561 23 F -0.193 7.193 24 F -0.196 7.196 25 F -0.181 7.181 26 C -0.147 4.147 27 C 0.521 3.479 28 O -0.537 6.537 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.402 0.598 39 H 0.276 0.724 40 H 0.113 0.887 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.540 5.934 15.752 16.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.037 4.037 4 C 0.009 3.991 5 N -0.347 5.347 6 C 0.001 3.999 7 C -0.149 4.149 8 H 0.135 0.865 9 C 0.294 3.706 10 O -0.413 6.413 11 N -0.361 5.361 12 C 0.090 3.910 13 H 0.117 0.883 14 C -0.573 4.573 15 H 0.112 0.888 16 C -0.110 4.110 17 N -0.490 5.490 18 Si 0.695 3.305 19 H -0.192 1.192 20 H -0.204 1.204 21 H -0.179 1.179 22 C 0.384 3.616 23 F -0.175 7.175 24 F -0.177 7.177 25 F -0.163 7.163 26 C -0.187 4.187 27 C 0.310 3.690 28 O -0.414 6.414 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.238 0.762 39 H 0.086 0.914 40 H 0.131 0.869 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.150 5.910 15.866 17.067 hybrid contribution -0.595 0.540 0.176 0.823 sum -2.745 6.450 16.042 17.506 Atomic orbital electron populations 1.22736 0.80992 1.02948 0.99714 1.87927 1.19742 1.27246 1.95372 1.23048 0.94410 0.85477 1.00771 1.21406 0.92179 0.99677 0.85885 1.48234 1.66407 1.08103 1.11972 1.21988 1.01658 0.79763 0.96501 1.22332 1.02470 0.94028 0.96035 0.86537 1.20322 0.82293 0.85779 0.82218 1.90701 1.32152 1.48080 1.70325 1.47522 1.42507 1.28873 1.17238 1.20295 0.96749 0.80787 0.93190 0.88269 1.20728 1.01579 1.46716 0.88259 0.88801 1.24986 0.98544 0.92982 0.94474 1.69855 1.34411 1.40496 1.04240 0.86952 0.83276 0.80420 0.79892 1.19202 1.20426 1.17870 1.21660 0.78714 0.87486 0.73788 1.93068 1.34543 1.93912 1.95947 1.93140 1.92526 1.94164 1.37906 1.93112 1.92679 1.58217 1.72243 1.22363 1.05296 0.93264 0.97785 1.20849 0.76110 0.88065 0.84017 1.90707 1.54654 1.13660 1.82405 0.94270 0.94160 0.89439 0.92311 0.92851 0.89302 0.88434 0.88451 0.89952 0.76187 0.91366 0.86909 0.87120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.55 10.53 -35.23 -0.37 -4.92 16 3 C 0.04 0.41 6.28 37.16 0.23 0.64 16 4 C 0.13 1.28 6.32 -4.04 -0.03 1.26 16 5 N -0.61 -7.54 2.88 -172.41 -0.50 -8.04 16 6 C 0.12 1.55 6.55 -3.12 -0.02 1.53 16 7 C -0.13 -1.62 3.55 -90.13 -0.32 -1.94 16 8 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 9 C 0.51 8.78 6.72 -10.98 -0.07 8.70 16 10 O -0.54 -10.96 14.14 5.56 0.08 -10.88 16 11 N -0.71 -12.97 4.86 -54.93 -0.27 -13.23 16 12 C 0.19 4.21 1.56 -69.08 -0.11 4.10 16 13 H 0.10 2.34 4.59 -51.93 -0.24 2.10 16 14 C -0.54 -13.12 8.53 -34.44 -0.29 -13.41 16 15 H 0.09 2.50 8.00 -52.49 -0.42 2.08 16 16 C 0.10 2.55 5.47 -17.82 -0.10 2.45 16 17 N -0.86 -23.04 13.96 55.43 0.77 -22.27 16 18 Si 0.87 19.58 27.58 -169.99 -4.69 14.89 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 21 H -0.25 -5.80 6.06 56.52 0.34 -5.46 16 22 C 0.44 9.40 2.83 37.16 0.11 9.50 16 23 F -0.19 -3.96 16.93 2.25 0.04 -3.92 16 24 F -0.20 -4.12 15.83 2.25 0.04 -4.09 16 25 F -0.18 -4.03 16.89 2.25 0.04 -3.99 16 26 C -0.15 -1.91 6.37 -26.74 -0.17 -2.08 16 27 C 0.52 7.46 8.02 -10.86 -0.09 7.37 16 28 O -0.54 -9.25 17.60 5.56 0.10 -9.16 16 29 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.89 7.93 -51.93 -0.41 0.48 16 36 H 0.10 1.47 7.06 -51.93 -0.37 1.10 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 6.47 8.59 -40.82 -0.35 6.12 16 39 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.11 1.61 7.89 -51.93 -0.41 1.20 16 LS Contribution 360.31 15.07 5.43 5.43 Total: -1.00 -30.74 360.31 -4.27 -35.01 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.20 Total: 5.63 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 0.26 Total: 19.54 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.01 Total: -43.54 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.19 Total: -24.96 kcal Atomic # 9 Polarization: -12.11 SS G_CDS: 0.11 Total: -11.99 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -4.69 Total: 14.89 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.74 -4.27 -35.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928816454.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -236.930 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -267.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -271.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds