Wall clock time and date at job start Tue Mar 31 2020 20:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 117.00355 * 2 1 4 4 O 1.20830 * 119.99478 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00331 * 179.97438 * 3 2 1 6 6 C 1.52997 * 109.47196 * 179.97438 * 5 3 2 7 7 C 1.53789 * 113.61480 * 174.99897 * 6 5 3 8 8 C 1.53788 * 87.08081 * 139.98437 * 7 6 5 9 9 N 1.46502 * 113.61377 * 89.11793 * 8 7 6 10 10 C 1.34774 * 119.99834 * 156.52894 * 9 8 7 11 11 O 1.21588 * 120.00062 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99582 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99480 * 179.97438 * 12 10 9 14 14 H 1.08995 * 109.47405 * 325.00330 * 13 12 10 15 15 C 1.50703 * 109.46773 * 205.00207 * 13 12 10 16 16 H 1.07995 * 120.00075 * 245.23723 * 15 13 12 17 17 C 1.37871 * 119.99756 * 65.23799 * 15 13 12 18 18 N 1.31514 * 119.99946 * 175.10196 * 17 15 13 19 19 Si 1.86798 * 120.00228 * 355.10655 * 17 15 13 20 20 H 1.48498 * 109.46997 * 275.09113 * 19 17 15 21 21 H 1.48497 * 109.47218 * 35.09267 * 19 17 15 22 22 H 1.48507 * 109.47437 * 155.09565 * 19 17 15 23 23 C 1.53001 * 109.46805 * 85.00693 * 13 12 10 24 24 F 1.39897 * 109.47000 * 174.98116 * 23 13 12 25 25 F 1.39901 * 109.47068 * 294.98258 * 23 13 12 26 26 F 1.39895 * 109.47294 * 54.98131 * 23 13 12 27 27 C 1.53781 * 87.17269 * 334.52720 * 8 7 6 28 28 H 1.09004 * 109.47144 * 60.00131 * 1 2 3 29 29 H 1.08999 * 109.47197 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47409 * 300.00820 * 1 2 3 31 31 H 1.09010 * 109.47045 * 59.99968 * 5 3 2 32 32 H 1.08998 * 109.47737 * 299.99913 * 5 3 2 33 33 H 1.09001 * 112.85309 * 43.81135 * 6 5 3 34 34 H 1.09000 * 113.61285 * 25.43592 * 7 6 5 35 35 H 1.08999 * 113.61597 * 254.52945 * 7 6 5 36 36 H 1.08994 * 113.61190 * 219.93669 * 8 7 6 37 37 H 0.97005 * 119.99920 * 336.52637 * 9 8 7 38 38 H 0.96997 * 120.00598 * 0.02562 * 12 10 9 39 39 H 0.97003 * 120.00545 * 180.02562 * 18 17 15 40 40 H 1.09001 * 113.61695 * 140.01962 * 27 8 7 41 41 H 1.09003 * 113.61587 * 270.92412 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 -0.0002 7 6 5.5209 2.9348 0.1232 8 6 5.3819 4.0666 -0.9088 9 7 5.1161 5.3771 -0.3103 10 6 5.4302 6.5016 -0.9835 11 8 5.9337 6.4284 -2.0878 12 7 5.1852 7.7072 -0.4331 13 6 5.5272 8.9295 -1.1647 14 1 6.4380 8.7655 -1.7405 15 6 5.7466 10.0552 -0.1871 16 1 5.0785 10.9037 -0.1818 17 6 6.8003 10.0019 0.7004 18 7 7.0498 11.0257 1.4872 19 14 7.8737 8.4754 0.7853 20 1 7.2454 7.4782 1.6886 21 1 8.0145 7.8931 -0.5735 22 1 9.2145 8.8415 1.3084 23 6 4.3828 9.2933 -2.1130 24 9 4.6580 10.5198 -2.7269 25 9 4.2540 8.3009 -3.0906 26 9 3.1902 9.3917 -1.3884 27 6 4.1168 3.3505 -1.4106 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 3.9564 0.7805 -0.8892 32 1 3.9558 0.7809 0.8908 33 1 3.4248 3.3539 0.6945 34 1 6.0995 2.0842 -0.2370 35 1 5.8391 3.2782 1.1075 36 1 6.1890 4.0914 -1.6408 37 1 4.7139 5.4354 0.5706 38 1 4.7831 7.7656 0.4477 39 1 7.7913 10.9884 2.1115 40 1 3.3022 4.0292 -1.6636 41 1 4.3122 2.6133 -2.1894 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932888289.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:12 Heat of formation + Delta-G solvation = -275.332352 kcal Electronic energy + Delta-G solvation = -30353.478812 eV Core-core repulsion = 25432.365796 eV Total energy + Delta-G solvation = -4921.113016 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.89510 -48.39902 -48.38369 -41.72662 -41.16409 -39.63277 -37.47419 -36.65071 -34.72934 -34.25772 -31.71813 -30.34337 -28.33206 -26.95427 -26.61815 -24.72655 -23.37752 -22.13992 -21.81231 -20.40131 -20.05736 -19.42300 -19.16972 -18.65413 -18.51357 -18.34586 -17.64028 -17.48719 -17.20848 -16.40014 -16.15359 -15.91562 -15.42552 -15.29336 -15.19903 -15.08327 -14.84923 -14.80989 -14.68888 -14.58207 -14.54450 -14.50171 -14.09137 -13.77431 -13.45576 -13.28060 -12.94510 -12.92203 -12.65861 -12.50938 -12.09134 -11.98461 -11.85492 -11.79707 -11.68386 -11.39238 -11.33391 -11.13770 -10.97687 -10.32900 -9.81360 -8.52839 -6.71956 1.22950 1.25353 1.35412 1.47814 1.62503 1.81982 1.92534 2.16972 2.27802 2.82899 3.14380 3.27125 3.36652 3.51097 3.56433 3.67068 3.83608 3.95141 3.99264 4.30035 4.30669 4.45425 4.47665 4.57139 4.67001 4.71009 4.82046 4.86492 4.93715 4.95842 5.11838 5.17937 5.29939 5.41267 5.46032 5.72840 5.83907 6.09037 6.42372 6.76915 6.99382 7.09633 7.58030 8.59233 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.003123 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.582708 B = 8963.594589 C = 9857.903906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.366 6.366 3 C 0.455 3.545 4 O -0.545 6.545 5 C -0.096 4.096 6 C -0.095 4.095 7 C -0.116 4.116 8 C 0.121 3.879 9 N -0.721 5.721 10 C 0.691 3.309 11 O -0.620 6.620 12 N -0.732 5.732 13 C 0.233 3.767 14 H 0.077 0.923 15 C -0.541 4.541 16 H 0.063 0.937 17 C 0.058 3.942 18 N -0.903 5.903 19 Si 0.943 3.057 20 H -0.246 1.246 21 H -0.272 1.272 22 H -0.289 1.289 23 C 0.443 3.557 24 F -0.187 7.187 25 F -0.191 7.191 26 F -0.187 7.187 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.131 0.869 30 H 0.058 0.942 31 H 0.133 0.867 32 H 0.138 0.862 33 H 0.085 0.915 34 H 0.129 0.871 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.407 0.593 38 H 0.407 0.593 39 H 0.280 0.720 40 H 0.041 0.959 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 -24.963 1.062 25.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.282 6.282 3 C 0.300 3.700 4 O -0.434 6.434 5 C -0.133 4.133 6 C -0.114 4.114 7 C -0.153 4.153 8 C 0.015 3.985 9 N -0.376 5.376 10 C 0.392 3.608 11 O -0.501 6.501 12 N -0.389 5.389 13 C 0.127 3.873 14 H 0.094 0.906 15 C -0.579 4.579 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.538 5.538 19 Si 0.767 3.233 20 H -0.170 1.170 21 H -0.197 1.197 22 H -0.216 1.216 23 C 0.387 3.613 24 F -0.168 7.168 25 F -0.173 7.173 26 F -0.169 7.169 27 C -0.187 4.187 28 H 0.074 0.926 29 H 0.149 0.851 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.156 0.844 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.243 0.757 38 H 0.244 0.756 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.817 -24.654 0.194 25.331 hybrid contribution -0.659 0.462 0.557 0.979 sum -6.476 -24.192 0.751 25.055 Atomic orbital electron populations 1.23472 0.75454 1.05471 1.02120 1.86505 1.24498 1.33315 1.83892 1.24584 0.93606 0.80826 0.71010 1.90700 1.68341 1.37640 1.46764 1.21554 0.84997 0.98304 1.08459 1.22440 0.96907 0.94593 0.97438 1.23366 0.94949 0.97562 0.99465 1.21849 0.98272 0.80883 0.97505 1.44825 1.67186 1.03883 1.21702 1.16450 0.78843 0.81406 0.84121 1.90859 1.51304 1.86805 1.21097 1.46399 1.66660 1.03630 1.22223 1.19751 0.90798 0.84937 0.91763 0.90563 1.20729 1.14811 1.03293 1.19031 0.91871 1.25546 0.96944 0.98687 0.93576 1.69956 1.30009 1.31440 1.22372 0.85829 0.78015 0.79950 0.79477 1.16954 1.19729 1.21589 1.21447 0.85117 0.73919 0.80827 1.93098 1.93804 1.45585 1.84361 1.93153 1.96495 1.62086 1.65527 1.93079 1.50068 1.95986 1.77734 1.23618 0.97402 0.99883 0.97841 0.92606 0.85101 0.92326 0.84907 0.84401 0.89695 0.85240 0.89631 0.89616 0.75668 0.75572 0.91072 0.94001 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.37 -5.73 10.56 -51.43 -0.54 -6.28 16 3 C 0.45 8.20 7.96 71.23 0.57 8.77 16 4 O -0.54 -14.36 15.51 21.95 0.34 -14.02 16 5 C -0.10 -1.00 5.65 29.84 0.17 -0.83 16 6 C -0.10 -1.47 3.04 -10.17 -0.03 -1.50 16 7 C -0.12 -1.53 7.38 31.13 0.23 -1.30 16 8 C 0.12 2.84 4.30 45.52 0.20 3.03 16 9 N -0.72 -21.05 5.27 -455.29 -2.40 -23.45 16 10 C 0.69 27.28 7.77 179.06 1.39 28.67 16 11 O -0.62 -28.86 14.53 -3.99 -0.06 -28.92 16 12 N -0.73 -29.96 2.89 -461.40 -1.33 -31.29 16 13 C 0.23 11.00 1.42 44.25 0.06 11.07 16 14 H 0.08 3.87 6.52 -2.39 -0.02 3.85 16 15 C -0.54 -28.44 8.65 25.60 0.22 -28.21 16 16 H 0.06 3.68 7.95 -2.91 -0.02 3.66 16 17 C 0.06 3.06 5.47 84.65 0.46 3.52 16 18 N -0.90 -50.48 13.96 21.45 0.30 -50.18 16 19 Si 0.94 41.63 25.78 68.60 1.77 43.39 16 20 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.27 -12.75 6.57 99.48 0.65 -12.10 16 22 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 23 C 0.44 20.31 2.79 71.98 0.20 20.51 16 24 F -0.19 -8.69 16.86 44.97 0.76 -7.93 16 25 F -0.19 -8.75 15.83 44.97 0.71 -8.04 16 26 F -0.19 -8.31 16.97 44.97 0.76 -7.55 16 27 C -0.15 -3.12 7.45 31.21 0.23 -2.89 16 28 H 0.06 0.76 8.13 -2.38 -0.02 0.74 16 29 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.13 0.79 7.85 -2.38 -0.02 0.77 16 32 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.08 1.64 7.68 -2.39 -0.02 1.62 16 34 H 0.13 0.96 8.10 -2.39 -0.02 0.94 16 35 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.09 2.34 7.50 -2.39 -0.02 2.33 16 37 H 0.41 9.79 8.72 -92.70 -0.81 8.98 16 38 H 0.41 15.01 8.59 -92.71 -0.80 14.22 16 39 H 0.28 14.49 8.31 -92.71 -0.77 13.71 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.11 1.79 7.90 -2.39 -0.02 1.77 16 Total: -1.00 -72.73 359.32 4.65 -68.08 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: -0.56 Total: 23.81 kcal Atomic # 6 Polarization: 37.48 SS G_CDS: 4.90 Total: 42.38 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -3.43 Total: -104.93 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -0.26 Total: -49.22 kcal Atomic # 9 Polarization: -25.75 SS G_CDS: 2.23 Total: -23.52 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.77 Total: 43.39 kcal Total: -72.73 4.65 -68.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888289.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -207.255 kcal (2) G-P(sol) polarization free energy of solvation -72.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds