Wall clock time and date at job start Tue Mar 31 2020 20:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00463 * 2 1 4 4 O 1.20829 * 120.00097 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00111 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.66972 * 61.78651 * 5 3 2 7 7 C 1.54888 * 110.75894 * 298.55139 * 5 3 2 8 8 C 1.54261 * 104.19672 * 203.55764 * 7 5 3 9 9 C 1.53876 * 106.59990 * 23.60631 * 8 7 5 10 10 H 1.08998 * 110.03319 * 240.71542 * 9 8 7 11 11 N 1.46504 * 110.03266 * 119.28382 * 9 8 7 12 12 C 1.34774 * 119.99597 * 86.45674 * 11 9 8 13 13 O 1.21584 * 120.00528 * 359.97438 * 12 11 9 14 14 N 1.34782 * 119.99656 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99818 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47311 * 324.99812 * 15 14 12 17 17 C 1.50694 * 109.47112 * 204.99595 * 15 14 12 18 18 H 1.07997 * 120.00151 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00275 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99580 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00202 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47322 * 119.99786 * 21 19 17 24 24 H 1.48499 * 109.47090 * 239.99732 * 21 19 17 25 25 C 1.53006 * 109.47184 * 84.99634 * 15 14 12 26 26 F 1.39895 * 109.46938 * 60.00029 * 25 15 14 27 27 F 1.39903 * 109.47099 * 179.97438 * 25 15 14 28 28 F 1.39892 * 109.47062 * 299.99913 * 25 15 14 29 29 C 1.54267 * 106.59870 * 0.02562 * 9 8 7 30 30 H 1.09006 * 109.46803 * 59.99270 * 1 2 3 31 31 H 1.08996 * 109.47635 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46573 * 300.00348 * 1 2 3 33 33 H 1.09000 * 110.48622 * 84.87547 * 7 5 3 34 34 H 1.08999 * 110.48451 * 322.23359 * 7 5 3 35 35 H 1.08998 * 110.03492 * 264.32506 * 8 7 5 36 36 H 1.08999 * 110.07717 * 142.91216 * 8 7 5 37 37 H 0.96997 * 120.00453 * 266.45882 * 11 9 8 38 38 H 0.96997 * 120.00394 * 359.97438 * 14 12 11 39 39 H 0.97008 * 119.99772 * 179.97438 * 20 19 17 40 40 H 1.09004 * 110.48597 * 95.06674 * 29 9 8 41 41 H 1.08994 * 110.48679 * 217.71200 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9763 0.8131 -0.8979 7 6 4.1504 0.6123 1.2731 8 6 5.5336 1.2738 1.4432 9 6 5.4655 2.6282 0.7162 10 1 6.2035 2.6593 -0.0854 11 7 5.7068 3.7191 1.6638 12 6 6.9678 4.1118 1.9323 13 8 7.9051 3.5605 1.3885 14 7 7.1898 5.1151 2.8046 15 6 8.5606 5.5416 3.0969 16 1 9.2223 4.6756 3.0788 17 6 8.6076 6.1813 4.4605 18 1 7.7067 6.2616 5.0507 19 6 9.8008 6.6639 4.9549 20 7 10.8980 6.5655 4.2365 21 14 9.8592 7.4561 6.6456 22 1 8.5007 7.4436 7.2453 23 1 10.7921 6.6967 7.5162 24 1 10.3309 8.8585 6.5190 25 6 9.0157 6.5533 2.0431 26 9 8.1664 7.6647 2.0664 27 9 10.3244 6.9610 2.3226 28 9 8.9720 5.9595 0.7772 29 6 4.0431 2.7429 0.1303 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 4.2567 -0.4628 1.1291 34 1 3.5186 0.8219 2.1363 35 1 6.3046 0.6475 0.9944 36 1 5.7470 1.4281 2.5009 37 1 4.9591 4.1588 2.0980 38 1 6.4421 5.5547 3.2387 39 1 11.7374 6.9054 4.5842 40 1 3.3944 3.2967 0.8091 41 1 4.0710 3.2223 -0.8482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932888753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:12 Heat of formation + Delta-G solvation = -258.547527 kcal Electronic energy + Delta-G solvation = -30316.856393 eV Core-core repulsion = 25396.471222 eV Total energy + Delta-G solvation = -4920.385172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.29303 -45.94565 -45.56294 -40.96083 -39.59612 -37.87322 -36.63477 -34.63216 -33.45638 -32.46237 -29.62293 -28.92195 -28.06246 -26.91098 -24.52640 -22.93302 -21.93948 -20.65735 -20.26305 -19.95470 -18.31679 -17.99347 -17.09275 -16.87240 -16.77585 -16.66522 -16.56441 -15.95048 -15.77184 -15.10664 -14.81030 -14.33056 -14.16661 -13.85944 -13.50518 -13.34856 -13.22162 -12.85831 -12.62849 -12.53351 -12.34968 -12.28272 -12.22428 -12.05926 -11.93456 -11.78644 -11.69363 -11.46677 -11.20787 -11.14566 -11.10367 -10.84994 -10.77451 -10.73989 -10.57358 -10.37895 -9.62355 -9.50623 -8.79120 -8.70076 -8.14614 -6.22183 -4.45635 1.89657 2.36261 3.17930 3.19755 3.26843 3.31087 3.77740 4.10554 4.20218 4.28127 4.52742 4.62667 4.74712 4.79621 4.83209 4.90587 4.95426 5.09993 5.14778 5.20522 5.25431 5.30453 5.40751 5.62951 5.82570 5.87820 5.92864 5.95072 6.04875 6.11416 6.18462 6.26532 6.86447 6.87901 7.23776 7.39818 7.43349 7.64290 7.71312 8.51632 8.68735 9.17010 9.28005 10.69439 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.002533 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.338164 B =11050.246908 C =11469.279044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.506 6.506 5 C -0.088 4.088 6 H 0.119 0.881 7 C -0.108 4.108 8 C -0.136 4.136 9 C 0.163 3.837 10 H 0.096 0.904 11 N -0.748 5.748 12 C 0.699 3.301 13 O -0.583 6.583 14 N -0.727 5.727 15 C 0.263 3.737 16 H 0.085 0.915 17 C -0.551 4.551 18 H 0.077 0.923 19 C 0.064 3.936 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.270 1.270 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.416 3.584 26 F -0.211 7.211 27 F -0.138 7.138 28 F -0.217 7.217 29 C -0.113 4.113 30 H 0.062 0.938 31 H 0.101 0.899 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.392 0.608 38 H 0.394 0.606 39 H 0.267 0.733 40 H 0.086 0.914 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 -11.395 -6.027 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.393 6.393 5 C -0.107 4.107 6 H 0.137 0.863 7 C -0.146 4.146 8 C -0.175 4.175 9 C 0.057 3.943 10 H 0.114 0.886 11 N -0.404 5.404 12 C 0.398 3.602 13 O -0.460 6.460 14 N -0.380 5.380 15 C 0.156 3.844 16 H 0.103 0.897 17 C -0.588 4.588 18 H 0.095 0.905 19 C -0.145 4.145 20 N -0.473 5.473 21 Si 0.742 3.258 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.359 3.641 26 F -0.192 7.192 27 F -0.119 7.119 28 F -0.199 7.199 29 C -0.151 4.151 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.226 0.774 38 H 0.227 0.773 39 H 0.078 0.922 40 H 0.104 0.896 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.478 -11.538 -6.553 20.387 hybrid contribution -0.819 1.165 0.955 1.715 sum -16.297 -10.373 -5.598 20.113 Atomic orbital electron populations 1.23275 0.76406 1.03695 1.02582 1.86521 1.23359 1.33525 1.84036 1.23704 0.91887 0.81256 0.71918 1.90681 1.67163 1.36373 1.45067 1.22039 0.86653 0.99421 1.02610 0.86266 1.22344 0.96768 1.00323 0.95187 1.22660 0.96132 0.96318 1.02418 1.21308 0.95930 0.85572 0.91487 0.88599 1.45262 1.06757 1.39493 1.48906 1.16085 0.83082 0.80728 0.80257 1.90911 1.41567 1.58669 1.54891 1.45282 1.10181 1.36558 1.45932 1.19590 0.79524 0.93444 0.91811 0.89743 1.20917 0.96120 1.42500 0.99252 0.90482 1.25084 0.95321 0.95422 0.98628 1.70421 0.99576 1.42348 1.34914 0.86161 0.78423 0.78863 0.82377 1.19444 1.20585 1.20599 1.23187 0.76939 0.82628 0.81338 1.92981 1.72243 1.57335 1.96690 1.93401 1.35477 1.91093 1.91923 1.93068 1.96504 1.84061 1.46222 1.22584 0.95728 0.93811 1.03000 0.91917 0.88082 0.91866 0.90124 0.91121 0.90453 0.90347 0.77378 0.77266 0.92200 0.89559 0.89882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.15 10.55 -39.24 -0.41 -3.57 16 3 C 0.47 4.68 7.26 36.01 0.26 4.94 16 4 O -0.51 -6.42 15.55 -18.75 -0.29 -6.71 16 5 C -0.09 -0.74 3.39 -89.76 -0.30 -1.04 16 6 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 7 C -0.11 -0.89 6.25 -25.08 -0.16 -1.05 16 8 C -0.14 -1.45 6.59 -25.61 -0.17 -1.62 16 9 C 0.16 1.96 3.22 -66.81 -0.22 1.75 16 10 H 0.10 1.33 7.61 -51.93 -0.40 0.93 16 11 N -0.75 -10.59 5.00 -57.58 -0.29 -10.88 16 12 C 0.70 13.66 8.09 -86.92 -0.70 12.95 16 13 O -0.58 -13.67 14.59 5.29 0.08 -13.59 16 14 N -0.73 -14.79 4.99 -59.81 -0.30 -15.09 16 15 C 0.26 6.53 2.21 -69.08 -0.15 6.38 16 16 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 17 C -0.55 -14.01 8.46 -34.44 -0.29 -14.30 16 18 H 0.08 1.85 7.74 -52.49 -0.41 1.45 16 19 C 0.06 1.67 5.20 -17.82 -0.09 1.57 16 20 N -0.84 -23.03 9.50 55.43 0.53 -22.51 16 21 Si 0.92 20.08 29.54 -169.99 -5.02 15.06 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 C 0.42 10.76 2.81 37.16 0.10 10.86 16 26 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 27 F -0.14 -3.84 12.91 2.25 0.03 -3.82 16 28 F -0.22 -5.59 15.68 2.25 0.04 -5.56 16 29 C -0.11 -1.10 5.56 -25.06 -0.14 -1.24 16 30 H 0.06 0.39 8.13 -51.93 -0.42 -0.03 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.95 7.92 -51.93 -0.41 0.54 16 37 H 0.39 4.55 8.35 -40.82 -0.34 4.21 16 38 H 0.39 6.90 8.55 -40.82 -0.35 6.55 16 39 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 40 H 0.09 0.89 7.13 -51.93 -0.37 0.52 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 354.38 15.07 5.34 5.34 Total: -1.00 -32.57 354.38 -6.23 -38.80 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.18 Total: 7.24 kcal Atomic # 6 Polarization: 21.28 SS G_CDS: -0.79 Total: 20.49 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.06 Total: -48.48 kcal Atomic # 8 Polarization: -23.24 SS G_CDS: -0.63 Total: -23.87 kcal Atomic # 9 Polarization: -14.69 SS G_CDS: 0.10 Total: -14.59 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.06 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.57 -6.23 -38.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -219.744 kcal (2) G-P(sol) polarization free energy of solvation -32.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -252.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -258.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds