Wall clock time and date at job start Tue Mar 31 2020 20:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34223 * 117.00463 * 2 1 4 4 O 1.20829 * 120.00097 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00111 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.66972 * 61.78651 * 5 3 2 7 7 C 1.54888 * 110.75894 * 298.55139 * 5 3 2 8 8 C 1.54261 * 104.19672 * 203.55764 * 7 5 3 9 9 C 1.53876 * 106.59990 * 23.60631 * 8 7 5 10 10 H 1.08998 * 110.03319 * 240.71542 * 9 8 7 11 11 N 1.46504 * 110.03266 * 119.28382 * 9 8 7 12 12 C 1.34774 * 119.99597 * 86.45674 * 11 9 8 13 13 O 1.21584 * 120.00528 * 359.97438 * 12 11 9 14 14 N 1.34782 * 119.99656 * 180.02562 * 12 11 9 15 15 C 1.46502 * 119.99818 * 179.97438 * 14 12 11 16 16 H 1.09001 * 109.47311 * 324.99812 * 15 14 12 17 17 C 1.50694 * 109.47112 * 204.99595 * 15 14 12 18 18 H 1.07997 * 120.00151 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00275 * 180.02562 * 17 15 14 20 20 N 1.31514 * 119.99580 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 120.00202 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47204 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47322 * 119.99786 * 21 19 17 24 24 H 1.48499 * 109.47090 * 239.99732 * 21 19 17 25 25 C 1.53006 * 109.47184 * 84.99634 * 15 14 12 26 26 F 1.39895 * 109.46938 * 60.00029 * 25 15 14 27 27 F 1.39903 * 109.47099 * 179.97438 * 25 15 14 28 28 F 1.39892 * 109.47062 * 299.99913 * 25 15 14 29 29 C 1.54267 * 106.59870 * 0.02562 * 9 8 7 30 30 H 1.09006 * 109.46803 * 59.99270 * 1 2 3 31 31 H 1.08996 * 109.47635 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46573 * 300.00348 * 1 2 3 33 33 H 1.09000 * 110.48622 * 84.87547 * 7 5 3 34 34 H 1.08999 * 110.48451 * 322.23359 * 7 5 3 35 35 H 1.08998 * 110.03492 * 264.32506 * 8 7 5 36 36 H 1.08999 * 110.07717 * 142.91216 * 8 7 5 37 37 H 0.96997 * 120.00453 * 266.45882 * 11 9 8 38 38 H 0.96997 * 120.00394 * 359.97438 * 14 12 11 39 39 H 0.97008 * 119.99772 * 179.97438 * 20 19 17 40 40 H 1.09004 * 110.48597 * 95.06674 * 29 9 8 41 41 H 1.08994 * 110.48679 * 217.71200 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9763 0.8131 -0.8979 7 6 4.1504 0.6123 1.2731 8 6 5.5336 1.2738 1.4432 9 6 5.4655 2.6282 0.7162 10 1 6.2035 2.6593 -0.0854 11 7 5.7068 3.7191 1.6638 12 6 6.9678 4.1118 1.9323 13 8 7.9051 3.5605 1.3885 14 7 7.1898 5.1151 2.8046 15 6 8.5606 5.5416 3.0969 16 1 9.2223 4.6756 3.0788 17 6 8.6076 6.1813 4.4605 18 1 7.7067 6.2616 5.0507 19 6 9.8008 6.6639 4.9549 20 7 10.8980 6.5655 4.2365 21 14 9.8592 7.4561 6.6456 22 1 8.5007 7.4436 7.2453 23 1 10.7921 6.6967 7.5162 24 1 10.3309 8.8585 6.5190 25 6 9.0157 6.5533 2.0431 26 9 8.1664 7.6647 2.0664 27 9 10.3244 6.9610 2.3226 28 9 8.9720 5.9595 0.7772 29 6 4.0431 2.7429 0.1303 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 4.2567 -0.4628 1.1291 34 1 3.5186 0.8219 2.1363 35 1 6.3046 0.6475 0.9944 36 1 5.7470 1.4281 2.5009 37 1 4.9591 4.1588 2.0980 38 1 6.4421 5.5547 3.2387 39 1 11.7374 6.9054 4.5842 40 1 3.3944 3.2967 0.8091 41 1 4.0710 3.2223 -0.8482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932888753.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:11 Heat of formation + Delta-G solvation = -280.238999 kcal Electronic energy + Delta-G solvation = -30317.797006 eV Core-core repulsion = 25396.471222 eV Total energy + Delta-G solvation = -4921.325784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.38169 -48.01623 -47.69471 -41.75397 -40.97865 -38.90769 -37.43591 -36.42406 -34.82507 -34.25200 -30.72564 -30.06572 -29.11086 -27.82755 -26.54966 -23.87586 -23.52186 -22.08904 -21.20022 -21.09221 -19.92776 -18.90684 -18.74869 -18.69721 -18.54263 -17.87475 -17.68698 -17.40851 -16.85177 -16.71811 -16.25001 -15.78579 -15.37851 -15.06527 -14.92291 -14.67586 -14.53803 -14.45286 -14.41987 -14.26820 -14.04975 -13.99643 -13.85231 -13.29163 -13.21258 -13.04710 -12.87387 -12.70137 -12.61943 -12.58111 -12.19367 -12.18293 -11.96314 -11.76784 -11.61838 -11.52952 -11.36026 -11.18674 -10.68148 -10.24912 -9.74947 -8.19676 -6.50010 1.14440 1.46734 1.48126 1.59469 1.64362 1.88113 2.17960 2.38317 2.59709 2.96283 3.26173 3.41638 3.49581 3.82128 3.88443 3.91761 4.09440 4.22936 4.26706 4.32825 4.34789 4.39769 4.44640 4.47323 4.57578 4.74215 4.88763 4.89112 5.08433 5.13670 5.22600 5.28804 5.38639 5.46868 5.54766 5.67809 5.70050 6.16321 6.55523 6.70711 7.18404 7.23517 7.70121 8.73288 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.022123 B = 0.002533 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.338164 B =11050.246908 C =11469.279044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.082 4.082 6 H 0.142 0.858 7 C -0.096 4.096 8 C -0.132 4.132 9 C 0.158 3.842 10 H 0.077 0.923 11 N -0.727 5.727 12 C 0.696 3.304 13 O -0.625 6.625 14 N -0.722 5.722 15 C 0.272 3.728 16 H 0.047 0.953 17 C -0.559 4.559 18 H 0.092 0.908 19 C 0.014 3.986 20 N -0.874 5.874 21 Si 0.983 3.017 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.282 1.282 25 C 0.412 3.588 26 F -0.204 7.204 27 F -0.151 7.151 28 F -0.219 7.219 29 C -0.105 4.105 30 H 0.061 0.939 31 H 0.131 0.869 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.408 0.592 38 H 0.409 0.591 39 H 0.268 0.732 40 H 0.084 0.916 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.446 -12.115 -5.371 22.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.318 3.682 4 O -0.427 6.427 5 C -0.101 4.101 6 H 0.160 0.840 7 C -0.134 4.134 8 C -0.171 4.171 9 C 0.052 3.948 10 H 0.095 0.905 11 N -0.384 5.384 12 C 0.396 3.604 13 O -0.505 6.505 14 N -0.376 5.376 15 C 0.164 3.836 16 H 0.065 0.935 17 C -0.596 4.596 18 H 0.110 0.890 19 C -0.191 4.191 20 N -0.509 5.509 21 Si 0.807 3.193 22 H -0.179 1.179 23 H -0.203 1.203 24 H -0.208 1.208 25 C 0.356 3.644 26 F -0.186 7.186 27 F -0.133 7.133 28 F -0.201 7.201 29 C -0.143 4.143 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.244 0.756 38 H 0.245 0.755 39 H 0.078 0.922 40 H 0.102 0.898 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.616 -12.285 -5.899 22.272 hybrid contribution -0.240 1.329 0.677 1.511 sum -17.856 -10.956 -5.221 21.590 Atomic orbital electron populations 1.23542 0.75001 1.05654 1.02427 1.86511 1.24764 1.32724 1.83536 1.23871 0.92236 0.81129 0.70973 1.90674 1.67911 1.37412 1.46716 1.22041 0.85971 0.98378 1.03722 0.84007 1.22268 0.94811 1.01213 0.95106 1.22574 0.97886 0.95592 1.01080 1.21494 0.96933 0.85569 0.90755 0.90483 1.45132 1.05240 1.39478 1.48530 1.16247 0.84173 0.80251 0.79741 1.90881 1.43418 1.59909 1.56329 1.45025 1.09025 1.37083 1.46500 1.19157 0.81004 0.91758 0.91722 0.93522 1.21248 0.96743 1.42170 0.99450 0.89049 1.25999 0.94927 0.95861 1.02333 1.70547 1.00174 1.43346 1.36794 0.85109 0.78994 0.77460 0.77730 1.17909 1.20297 1.20784 1.23381 0.76528 0.83027 0.81512 1.92979 1.71914 1.57050 1.96680 1.93373 1.36563 1.91277 1.92051 1.93059 1.96483 1.84112 1.46413 1.22478 0.93804 0.95124 1.02878 0.92027 0.85125 0.92136 0.88108 0.90999 0.90513 0.91872 0.75563 0.75502 0.92196 0.89787 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.36 -5.47 10.55 -51.35 -0.54 -6.02 16 3 C 0.47 8.49 7.26 71.24 0.52 9.01 16 4 O -0.54 -12.90 15.55 21.96 0.34 -12.56 16 5 C -0.08 -1.19 3.39 -10.24 -0.03 -1.22 16 6 H 0.14 1.46 8.14 -2.38 -0.02 1.44 16 7 C -0.10 -1.35 6.25 31.67 0.20 -1.15 16 8 C -0.13 -2.68 6.59 31.32 0.21 -2.47 16 9 C 0.16 3.68 3.22 45.72 0.15 3.83 16 10 H 0.08 2.14 7.61 -2.39 -0.02 2.12 16 11 N -0.73 -20.13 5.00 -454.34 -2.27 -22.40 16 12 C 0.70 27.34 8.09 179.05 1.45 28.79 16 13 O -0.63 -30.03 14.59 -3.98 -0.06 -30.09 16 14 N -0.72 -29.33 4.99 -461.40 -2.30 -31.63 16 15 C 0.27 13.71 2.21 44.25 0.10 13.81 16 16 H 0.05 2.72 7.58 -2.39 -0.02 2.70 16 17 C -0.56 -28.25 8.46 25.60 0.22 -28.03 16 18 H 0.09 4.25 7.74 -2.91 -0.02 4.23 16 19 C 0.01 0.72 5.20 84.66 0.44 1.16 16 20 N -0.87 -48.65 9.50 21.45 0.20 -48.44 16 21 Si 0.98 40.57 29.54 68.60 2.03 42.59 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 23 H -0.28 -11.25 7.11 99.48 0.71 -10.54 16 24 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 25 C 0.41 21.63 2.81 71.98 0.20 21.83 16 26 F -0.20 -10.14 16.94 44.97 0.76 -9.38 16 27 F -0.15 -8.63 12.91 44.97 0.58 -8.05 16 28 F -0.22 -11.51 15.68 44.97 0.70 -10.80 16 29 C -0.10 -1.88 5.56 31.68 0.18 -1.70 16 30 H 0.06 0.67 8.13 -2.38 -0.02 0.65 16 31 H 0.13 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.68 8.13 -2.39 -0.02 0.66 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.03 8.04 -2.39 -0.02 1.01 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.49 7.92 -2.39 -0.02 1.47 16 37 H 0.41 8.88 8.35 -92.71 -0.77 8.11 16 38 H 0.41 13.89 8.55 -92.71 -0.79 13.10 16 39 H 0.27 14.10 8.31 -92.70 -0.77 13.33 16 40 H 0.08 1.59 7.13 -2.38 -0.02 1.57 16 41 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -70.86 354.38 3.79 -67.07 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.47 Total: 24.39 kcal Atomic # 6 Polarization: 40.51 SS G_CDS: 4.81 Total: 45.32 kcal Atomic # 7 Polarization: -98.11 SS G_CDS: -4.37 Total: -102.47 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -0.26 Total: -48.67 kcal Atomic # 9 Polarization: -30.28 SS G_CDS: 2.05 Total: -28.23 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.59 kcal Total: -70.86 3.79 -67.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932888753.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -213.171 kcal (2) G-P(sol) polarization free energy of solvation -70.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -284.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -280.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds