Wall clock time and date at job start Tue Mar 31 2020 20:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00325 * 2 1 4 4 O 1.20825 * 119.99595 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00392 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.01564 * 330.35125 * 5 3 2 7 7 C 1.54273 * 110.03159 * 208.96956 * 5 3 2 8 8 C 1.54890 * 104.19335 * 217.10484 * 7 5 3 9 9 C 1.54894 * 102.75019 * 37.93874 * 8 7 5 10 10 C 1.54216 * 110.02516 * 91.75684 * 5 3 2 11 11 H 1.09001 * 110.08574 * 238.49526 * 10 5 3 12 12 N 1.46500 * 110.14496 * 0.03896 * 10 5 3 13 13 C 1.34775 * 119.99674 * 209.07277 * 12 10 5 14 14 O 1.21581 * 120.00317 * 359.97438 * 13 12 10 15 15 N 1.34781 * 119.99415 * 179.97438 * 13 12 10 16 16 C 1.46498 * 119.99519 * 179.97438 * 15 13 12 17 17 H 1.09004 * 109.47577 * 325.00069 * 16 15 13 18 18 C 1.50703 * 109.47087 * 204.99957 * 16 15 13 19 19 H 1.08003 * 119.99851 * 0.02562 * 18 16 15 20 20 C 1.37873 * 120.00440 * 179.97438 * 18 16 15 21 21 N 1.31524 * 119.99843 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00441 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.46825 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47026 * 120.00283 * 22 20 18 25 25 H 1.48503 * 109.47180 * 240.00211 * 22 20 18 26 26 C 1.52995 * 109.47203 * 85.00484 * 16 15 13 27 27 F 1.39898 * 109.47575 * 59.99620 * 26 16 15 28 28 F 1.39902 * 109.47349 * 179.97438 * 26 16 15 29 29 F 1.39902 * 109.46780 * 299.99609 * 26 16 15 30 30 H 1.09001 * 109.47240 * 300.00245 * 1 2 3 31 31 H 1.09004 * 109.46945 * 60.00059 * 1 2 3 32 32 H 1.09004 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.08992 * 110.48863 * 98.42521 * 7 5 3 34 34 H 1.08996 * 110.48179 * 335.77613 * 7 5 3 35 35 H 1.09001 * 110.75523 * 279.62727 * 8 7 5 36 36 H 1.08994 * 110.91515 * 156.33012 * 8 7 5 37 37 H 1.08999 * 110.48446 * 80.73599 * 9 8 7 38 38 H 1.09003 * 110.48924 * 203.24799 * 9 8 7 39 39 H 0.97004 * 119.99496 * 29.07335 * 12 10 5 40 40 H 0.96996 * 120.00477 * 0.02562 * 15 13 12 41 41 H 0.96995 * 120.00161 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9853 0.4056 0.5076 7 6 4.0274 2.5690 0.7025 8 6 5.2607 3.0260 -0.1155 9 6 4.8525 2.6832 -1.5698 10 6 4.0919 1.3466 -1.4475 11 1 4.7674 0.5135 -1.6422 12 7 2.9728 1.3176 -2.3924 13 6 3.1437 0.7961 -3.6234 14 8 4.2266 0.3501 -3.9498 15 7 2.1139 0.7691 -4.4926 16 6 2.2997 0.2027 -5.8308 17 1 3.3073 0.4245 -6.1826 18 6 1.2933 0.8066 -6.7760 19 1 0.5863 1.5394 -6.4160 20 6 1.2757 0.4245 -8.1007 21 7 2.1371 -0.4675 -8.5392 22 14 0.0287 1.1736 -9.2725 23 1 -0.8204 2.1448 -8.5370 24 1 0.7407 1.8727 -10.3723 25 1 -0.8251 0.0992 -9.8399 26 6 2.1012 -1.3133 -5.7750 27 9 0.8080 -1.5981 -5.3236 28 9 2.2780 -1.8542 -7.0531 29 9 3.0355 -1.8740 -4.8976 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.3094 2.3633 1.7350 34 1 3.2426 3.3244 0.6636 35 1 6.1484 2.4661 0.1787 36 1 5.4268 4.0974 -0.0032 37 1 4.2009 3.4571 -1.9756 38 1 5.7366 2.5631 -2.1960 39 1 2.1090 1.6739 -2.1321 40 1 1.2500 1.1252 -4.2323 41 1 2.1245 -0.7366 -9.4710 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932893087.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:05 Heat of formation + Delta-G solvation = -255.264075 kcal Electronic energy + Delta-G solvation = -31672.732315 eV Core-core repulsion = 26752.489525 eV Total energy + Delta-G solvation = -4920.242790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.30458 -45.95639 -45.57496 -41.15586 -39.39581 -37.87037 -36.40187 -34.64973 -33.44292 -32.45432 -30.11723 -28.74941 -27.62930 -26.91458 -24.53585 -22.78597 -21.89906 -20.90310 -20.33194 -19.80663 -18.62183 -17.82133 -17.18482 -16.87357 -16.70660 -16.57809 -16.34125 -15.79877 -15.43232 -15.12092 -14.81382 -14.57248 -14.28245 -13.68623 -13.68137 -13.32054 -13.16703 -12.86862 -12.53004 -12.46192 -12.35571 -12.25647 -12.21900 -11.94852 -11.81455 -11.79405 -11.67499 -11.26883 -11.17559 -11.11126 -10.93732 -10.85483 -10.83820 -10.77165 -10.53419 -10.38532 -9.63653 -9.55566 -8.87182 -8.71333 -8.18406 -6.22825 -4.46349 1.96339 2.53938 3.10899 3.18308 3.26101 3.30159 3.72474 4.19281 4.23370 4.28175 4.56993 4.59717 4.78278 4.94398 4.94652 4.98680 5.06719 5.11604 5.16178 5.25414 5.39192 5.42730 5.46920 5.65083 5.80927 5.86088 5.91364 5.96177 6.07502 6.17487 6.22921 6.25985 6.72431 6.83423 7.19845 7.35908 7.54823 7.62526 7.66840 8.50170 8.62298 9.13813 9.24646 10.68860 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015430 B = 0.003722 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.188929 B = 7520.667937 C = 7776.448606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.352 6.352 3 C 0.471 3.529 4 O -0.508 6.508 5 C -0.098 4.098 6 H 0.114 0.886 7 C -0.115 4.115 8 C -0.120 4.120 9 C -0.137 4.137 10 C 0.176 3.824 11 H 0.110 0.890 12 N -0.753 5.753 13 C 0.702 3.298 14 O -0.580 6.580 15 N -0.726 5.726 16 C 0.262 3.738 17 H 0.086 0.914 18 C -0.551 4.551 19 H 0.077 0.923 20 C 0.065 3.935 21 N -0.839 5.839 22 Si 0.915 3.085 23 H -0.270 1.270 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.416 3.584 27 F -0.211 7.211 28 F -0.137 7.137 29 F -0.216 7.216 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.390 0.610 40 H 0.393 0.607 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 3.911 17.169 17.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.267 6.267 3 C 0.315 3.685 4 O -0.396 6.396 5 C -0.119 4.119 6 H 0.132 0.868 7 C -0.153 4.153 8 C -0.158 4.158 9 C -0.175 4.175 10 C 0.070 3.930 11 H 0.128 0.872 12 N -0.412 5.412 13 C 0.402 3.598 14 O -0.457 6.457 15 N -0.378 5.378 16 C 0.156 3.844 17 H 0.103 0.897 18 C -0.588 4.588 19 H 0.095 0.905 20 C -0.144 4.144 21 N -0.473 5.473 22 Si 0.742 3.258 23 H -0.195 1.195 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.360 3.640 27 F -0.193 7.193 28 F -0.119 7.119 29 F -0.198 7.198 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.098 0.902 39 H 0.225 0.775 40 H 0.226 0.774 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.721 3.606 16.641 17.114 hybrid contribution -1.828 0.260 -0.359 1.881 sum -0.107 3.866 16.282 16.735 Atomic orbital electron populations 1.23324 0.76088 1.04067 1.02550 1.86574 1.23605 1.33119 1.83434 1.23524 0.91914 0.81522 0.71562 1.90671 1.67011 1.36271 1.45627 1.22240 0.87801 1.02552 0.99261 0.86767 1.22465 0.99046 0.95034 0.98732 1.22448 0.97178 1.01581 0.94607 1.22875 1.00904 0.96829 0.96938 1.21400 0.87971 0.99989 0.83673 0.87191 1.45439 1.14013 1.67623 1.14121 1.16019 0.85004 0.78584 0.80166 1.90908 1.24976 1.52713 1.77121 1.45278 1.12327 1.65104 1.15063 1.19614 1.02278 0.83679 0.78815 0.89668 1.20914 1.18296 1.26620 0.92966 0.90503 1.25076 0.96532 0.94368 0.98407 1.70418 1.34092 1.26927 1.15821 0.86161 0.80442 0.78994 0.80228 1.19452 1.20553 1.20574 1.23164 0.71974 0.95048 0.73855 1.92979 1.41271 1.95271 1.89737 1.93401 1.94680 1.87934 1.35841 1.93073 1.66943 1.88406 1.71375 0.91939 0.91543 0.87916 0.90615 0.89368 0.90845 0.90710 0.90656 0.90184 0.77502 0.77376 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.35 -4.36 10.57 -39.26 -0.41 -4.78 16 3 C 0.47 5.82 5.02 36.00 0.18 6.00 16 4 O -0.51 -7.03 14.83 -18.75 -0.28 -7.31 16 5 C -0.10 -1.02 3.41 -90.47 -0.31 -1.33 16 6 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 7 C -0.12 -0.98 6.31 -25.07 -0.16 -1.14 16 8 C -0.12 -0.99 6.91 -24.74 -0.17 -1.16 16 9 C -0.14 -1.55 6.52 -25.07 -0.16 -1.72 16 10 C 0.18 2.29 3.31 -66.63 -0.22 2.07 16 11 H 0.11 1.56 7.44 -51.93 -0.39 1.18 16 12 N -0.75 -11.87 4.56 -57.40 -0.26 -12.13 16 13 C 0.70 14.31 8.10 -86.92 -0.70 13.60 16 14 O -0.58 -13.79 14.50 5.29 0.08 -13.71 16 15 N -0.73 -15.30 4.99 -59.81 -0.30 -15.60 16 16 C 0.26 6.60 2.21 -69.08 -0.15 6.45 16 17 H 0.09 2.40 7.58 -51.93 -0.39 2.01 16 18 C -0.55 -14.15 8.46 -34.44 -0.29 -14.44 16 19 H 0.08 1.88 7.74 -52.48 -0.41 1.47 16 20 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 21 N -0.84 -23.07 9.50 55.43 0.53 -22.54 16 22 Si 0.92 20.18 29.54 -169.99 -5.02 15.16 16 23 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 C 0.42 10.80 2.81 37.16 0.10 10.91 16 27 F -0.21 -5.25 16.94 2.25 0.04 -5.21 16 28 F -0.14 -3.84 12.91 2.25 0.03 -3.81 16 29 F -0.22 -5.59 15.67 2.25 0.04 -5.55 16 30 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.88 6.86 -51.93 -0.36 0.52 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.93 8.05 -51.93 -0.42 0.51 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.39 5.78 6.36 -40.82 -0.26 5.52 16 40 H 0.39 7.34 8.55 -40.82 -0.35 6.99 16 41 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 350.16 15.07 5.28 5.28 Total: -1.00 -31.66 350.16 -6.29 -37.95 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.08 Total: 10.03 kcal Atomic # 6 Polarization: 23.15 SS G_CDS: -0.91 Total: 22.24 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: -0.03 Total: -50.28 kcal Atomic # 8 Polarization: -25.18 SS G_CDS: -0.62 Total: -25.80 kcal Atomic # 9 Polarization: -14.67 SS G_CDS: 0.10 Total: -14.57 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.66 -6.29 -37.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893087.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -217.316 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -248.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -255.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds