Wall clock time and date at job start Tue Mar 31 2020 20:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34231 * 117.00325 * 2 1 4 4 O 1.20825 * 119.99595 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00392 * 179.97438 * 3 2 1 6 6 H 1.09001 * 110.01564 * 330.35125 * 5 3 2 7 7 C 1.54273 * 110.03159 * 208.96956 * 5 3 2 8 8 C 1.54890 * 104.19335 * 217.10484 * 7 5 3 9 9 C 1.54894 * 102.75019 * 37.93874 * 8 7 5 10 10 C 1.54216 * 110.02516 * 91.75684 * 5 3 2 11 11 H 1.09001 * 110.08574 * 238.49526 * 10 5 3 12 12 N 1.46500 * 110.14496 * 0.03896 * 10 5 3 13 13 C 1.34775 * 119.99674 * 209.07277 * 12 10 5 14 14 O 1.21581 * 120.00317 * 359.97438 * 13 12 10 15 15 N 1.34781 * 119.99415 * 179.97438 * 13 12 10 16 16 C 1.46498 * 119.99519 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47577 * 35.00368 * 16 15 13 18 18 C 1.50701 * 109.47126 * 155.00465 * 16 15 13 19 19 H 1.08005 * 119.99853 * 359.97438 * 18 16 15 20 20 C 1.37873 * 120.00219 * 180.02562 * 18 16 15 21 21 N 1.31515 * 120.00127 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00089 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47228 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.47064 * 119.99689 * 22 20 18 25 25 H 1.48498 * 109.47367 * 239.99801 * 22 20 18 26 26 C 1.53004 * 109.47351 * 275.00075 * 16 15 13 27 27 F 1.39899 * 109.47045 * 59.99724 * 26 16 15 28 28 F 1.39902 * 109.47172 * 180.02562 * 26 16 15 29 29 F 1.39901 * 109.47023 * 300.00399 * 26 16 15 30 30 H 1.09001 * 109.47240 * 300.00245 * 1 2 3 31 31 H 1.09004 * 109.46945 * 60.00059 * 1 2 3 32 32 H 1.09004 * 109.47162 * 180.02562 * 1 2 3 33 33 H 1.08992 * 110.48863 * 98.42521 * 7 5 3 34 34 H 1.08996 * 110.48179 * 335.77613 * 7 5 3 35 35 H 1.09001 * 110.75523 * 279.62727 * 8 7 5 36 36 H 1.08994 * 110.91515 * 156.33012 * 8 7 5 37 37 H 1.08999 * 110.48446 * 80.73599 * 9 8 7 38 38 H 1.09003 * 110.48924 * 203.24799 * 9 8 7 39 39 H 0.97004 * 119.99496 * 29.07335 * 12 10 5 40 40 H 0.96996 * 120.00477 * 0.02562 * 15 13 12 41 41 H 0.96997 * 120.00302 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9853 0.4056 0.5076 7 6 4.0274 2.5690 0.7025 8 6 5.2607 3.0260 -0.1155 9 6 4.8525 2.6832 -1.5698 10 6 4.0919 1.3466 -1.4475 11 1 4.7674 0.5135 -1.6422 12 7 2.9728 1.3176 -2.3924 13 6 3.1437 0.7961 -3.6234 14 8 4.2266 0.3501 -3.9498 15 7 2.1139 0.7691 -4.4926 16 6 2.2997 0.2027 -5.8308 17 1 2.9928 -0.6369 -5.7771 18 6 0.9730 -0.2745 -6.3630 19 1 0.0807 -0.1670 -5.7640 20 6 0.8984 -0.8492 -7.6140 21 7 1.9850 -0.9806 -8.3431 22 14 -0.7460 -1.4414 -8.2733 23 1 -1.8058 -1.1812 -7.2662 24 1 -1.0664 -0.7154 -9.5286 25 1 -0.6730 -2.8987 -8.5491 26 6 2.8678 1.2741 -6.7637 27 9 4.0994 1.7172 -6.2697 28 9 3.0447 0.7333 -8.0418 29 9 1.9782 2.3516 -6.8328 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 4.3094 2.3633 1.7350 34 1 3.2426 3.3244 0.6636 35 1 6.1484 2.4661 0.1787 36 1 5.4268 4.0974 -0.0032 37 1 4.2009 3.4571 -1.9756 38 1 5.7366 2.5631 -2.1960 39 1 2.1090 1.6739 -2.1321 40 1 1.2500 1.1252 -4.2323 41 1 1.9326 -1.3853 -9.2231 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932893088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:19:08 Heat of formation + Delta-G solvation = -275.774452 kcal Electronic energy + Delta-G solvation = -31598.863566 eV Core-core repulsion = 26677.731379 eV Total energy + Delta-G solvation = -4921.132187 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.41347 -48.04833 -47.72497 -42.16685 -40.85293 -38.93341 -37.38701 -36.48053 -34.89037 -34.27157 -30.98694 -30.41711 -28.53030 -28.03346 -26.57927 -23.92061 -23.48159 -22.16204 -21.65579 -20.79459 -20.24720 -18.97538 -18.86477 -18.72642 -18.58058 -18.15228 -17.61199 -17.22418 -16.86591 -16.46279 -16.21755 -16.00340 -15.52348 -15.11051 -14.96196 -14.88981 -14.57453 -14.51306 -14.45867 -14.30001 -14.20588 -14.02621 -13.88146 -13.43375 -13.09329 -13.00612 -12.79048 -12.68329 -12.57923 -12.55824 -12.21789 -12.07394 -11.96676 -11.81519 -11.60712 -11.56055 -11.49127 -11.27394 -10.70276 -10.36595 -9.88329 -8.21660 -6.52504 1.00567 1.45376 1.46796 1.56611 1.62441 1.75856 2.07162 2.36309 2.54882 2.93952 3.16352 3.39650 3.42984 3.75622 3.78450 3.86903 4.14486 4.17983 4.25221 4.28301 4.32146 4.39095 4.40493 4.44117 4.70150 4.71347 4.83373 4.98801 5.03497 5.17283 5.17620 5.31307 5.39308 5.43026 5.44830 5.53128 5.64420 5.96091 6.52260 6.62583 7.01704 7.17976 7.55778 8.71430 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.003991 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.321642 B = 7014.636878 C = 8344.499043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.362 6.362 3 C 0.468 3.532 4 O -0.527 6.527 5 C -0.092 4.092 6 H 0.140 0.860 7 C -0.108 4.108 8 C -0.108 4.108 9 C -0.139 4.139 10 C 0.166 3.834 11 H 0.099 0.901 12 N -0.737 5.737 13 C 0.701 3.299 14 O -0.617 6.617 15 N -0.722 5.722 16 C 0.272 3.728 17 H 0.050 0.950 18 C -0.561 4.561 19 H 0.090 0.910 20 C 0.016 3.984 21 N -0.873 5.873 22 Si 0.984 3.016 23 H -0.256 1.256 24 H -0.281 1.281 25 H -0.276 1.276 26 C 0.412 3.588 27 F -0.218 7.218 28 F -0.150 7.150 29 F -0.205 7.205 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.396 0.604 40 H 0.405 0.595 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 4.177 19.010 19.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.278 6.278 3 C 0.313 3.687 4 O -0.416 6.416 5 C -0.112 4.112 6 H 0.158 0.842 7 C -0.146 4.146 8 C -0.146 4.146 9 C -0.178 4.178 10 C 0.061 3.939 11 H 0.117 0.883 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.497 6.497 15 N -0.375 5.375 16 C 0.164 3.836 17 H 0.067 0.933 18 C -0.597 4.597 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.507 5.507 22 Si 0.808 3.192 23 H -0.180 1.180 24 H -0.207 1.207 25 H -0.201 1.201 26 C 0.356 3.644 27 F -0.200 7.200 28 F -0.131 7.131 29 F -0.187 7.187 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.142 0.858 33 H 0.124 0.876 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.233 0.767 40 H 0.241 0.759 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.766 3.981 18.517 18.956 hybrid contribution -1.473 0.302 -0.942 1.775 sum -0.707 4.283 17.575 18.103 Atomic orbital electron populations 1.23558 0.74902 1.05585 1.02718 1.86565 1.24935 1.33074 1.83213 1.23871 0.92572 0.81294 0.70995 1.90667 1.67621 1.36865 1.46473 1.22322 0.86674 1.04800 0.97366 0.84165 1.22472 0.98448 0.93539 1.00127 1.22436 0.97792 1.02758 0.91603 1.22844 0.99922 0.95655 0.99349 1.21681 0.87179 1.00365 0.84663 0.88290 1.45363 1.15188 1.66068 1.12866 1.16155 0.84057 0.78607 0.81122 1.90880 1.26159 1.54463 1.78177 1.45054 1.13134 1.65670 1.13663 1.19210 0.99179 0.88174 0.77052 0.93265 1.21220 0.92485 1.42783 1.03255 0.89209 1.25987 1.01472 0.95071 0.96420 1.70535 1.29424 1.39118 1.11659 0.85101 0.78130 0.77799 0.78213 1.17997 1.20707 1.20134 1.23359 0.74270 0.83111 0.83681 1.93062 1.47546 1.91255 1.88132 1.93375 1.95012 1.84031 1.40698 1.92981 1.69336 1.59525 1.96841 0.90952 0.92279 0.85785 0.87622 0.90771 0.88891 0.89451 0.92163 0.91504 0.76748 0.75920 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.36 -8.12 10.57 -51.43 -0.54 -8.66 16 3 C 0.47 10.65 5.02 71.23 0.36 11.01 16 4 O -0.53 -13.88 14.83 21.97 0.33 -13.55 16 5 C -0.09 -1.69 3.41 -10.70 -0.04 -1.73 16 6 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 7 C -0.11 -1.55 6.31 31.67 0.20 -1.35 16 8 C -0.11 -1.54 6.91 31.89 0.22 -1.32 16 9 C -0.14 -3.18 6.52 31.67 0.21 -2.98 16 10 C 0.17 4.20 3.31 45.83 0.15 4.35 16 11 H 0.10 2.75 7.44 -2.39 -0.02 2.74 16 12 N -0.74 -23.11 4.56 -453.79 -2.07 -25.18 16 13 C 0.70 28.94 8.10 179.05 1.45 30.39 16 14 O -0.62 -30.14 14.50 -3.97 -0.06 -30.20 16 15 N -0.72 -30.70 4.99 -461.40 -2.30 -33.01 16 16 C 0.27 13.92 2.21 44.25 0.10 14.02 16 17 H 0.05 2.89 7.58 -2.39 -0.02 2.87 16 18 C -0.56 -28.62 8.46 25.60 0.22 -28.40 16 19 H 0.09 4.25 7.74 -2.91 -0.02 4.22 16 20 C 0.02 0.82 5.20 84.65 0.44 1.26 16 21 N -0.87 -48.57 9.50 21.45 0.20 -48.37 16 22 Si 0.98 40.60 29.54 68.60 2.03 42.63 16 23 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 24 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 26 C 0.41 21.87 2.81 71.98 0.20 22.07 16 27 F -0.22 -11.56 15.68 44.97 0.70 -10.85 16 28 F -0.15 -8.58 12.91 44.97 0.58 -8.00 16 29 F -0.20 -10.34 16.94 44.97 0.76 -9.58 16 30 H 0.07 1.10 8.13 -2.39 -0.02 1.08 16 31 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 32 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.07 1.32 6.86 -2.39 -0.02 1.31 16 35 H 0.09 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 38 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.40 11.56 6.36 -92.71 -0.59 10.97 16 40 H 0.41 14.99 8.55 -92.71 -0.79 14.20 16 41 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -68.94 350.17 4.05 -64.89 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: -0.28 Total: 30.90 kcal Atomic # 6 Polarization: 44.27 SS G_CDS: 4.70 Total: 48.97 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -4.17 Total: -106.55 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -0.28 Total: -52.41 kcal Atomic # 9 Polarization: -30.47 SS G_CDS: 2.05 Total: -28.43 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -68.94 4.05 -64.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932893088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -210.887 kcal (2) G-P(sol) polarization free energy of solvation -68.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -279.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -275.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds