Wall clock time and date at job start Tue Mar 31 2020 20:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34236 * 116.99584 * 2 1 4 4 O 1.20825 * 120.00216 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99508 * 180.02562 * 3 2 1 6 6 C 1.53046 * 109.45717 * 179.97438 * 5 3 2 7 7 C 1.53196 * 109.31090 * 178.62729 * 6 5 3 8 8 N 1.46917 * 108.77797 * 54.63234 * 7 6 5 9 9 C 1.34778 * 120.63445 * 126.36721 * 8 7 6 10 10 O 1.21586 * 119.99761 * 5.01420 * 9 8 7 11 11 N 1.34776 * 120.00678 * 184.73954 * 9 8 7 12 12 C 1.46498 * 120.00450 * 175.14893 * 11 9 8 13 13 H 1.08999 * 109.46718 * 34.99797 * 12 11 9 14 14 C 1.50694 * 109.47085 * 155.00088 * 12 11 9 15 15 H 1.07997 * 120.00515 * 359.97438 * 14 12 11 16 16 C 1.37876 * 119.99975 * 179.97438 * 14 12 11 17 17 N 1.31518 * 119.99905 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 120.00261 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47224 * 90.00080 * 18 16 14 20 20 H 1.48505 * 109.47321 * 210.00039 * 18 16 14 21 21 H 1.48502 * 109.46973 * 330.00207 * 18 16 14 22 22 C 1.53008 * 109.47006 * 275.00133 * 12 11 9 23 23 F 1.39900 * 109.47122 * 59.99737 * 22 12 11 24 24 F 1.39896 * 109.46678 * 180.02562 * 22 12 11 25 25 F 1.39905 * 109.46740 * 299.99864 * 22 12 11 26 26 C 1.46933 * 118.74009 * 306.64198 * 8 7 6 27 27 C 1.52759 * 109.00384 * 53.31184 * 26 8 7 28 28 H 1.08998 * 109.47268 * 300.00383 * 1 2 3 29 29 H 1.09004 * 109.46694 * 60.00583 * 1 2 3 30 30 H 1.09002 * 109.46538 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.46105 * 299.96133 * 5 3 2 32 32 H 1.09000 * 109.49944 * 58.67064 * 6 5 3 33 33 H 1.09004 * 109.51863 * 298.58922 * 6 5 3 34 34 H 1.08995 * 109.58559 * 294.84193 * 7 6 5 35 35 H 1.09004 * 109.70044 * 174.48811 * 7 6 5 36 36 H 0.97004 * 119.99291 * 355.15128 * 11 9 8 37 37 H 0.97003 * 119.99922 * 179.97438 * 17 16 14 38 38 H 1.08999 * 109.58711 * 173.14094 * 26 8 7 39 39 H 1.08995 * 109.58427 * 293.57397 * 26 8 7 40 40 H 1.09006 * 109.56237 * 185.55859 * 27 26 8 41 41 H 1.08997 * 109.39385 * 65.51591 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 3.9999 2.7427 -0.0011 7 6 5.5296 2.8191 0.0329 8 7 6.0674 2.0306 -1.0839 9 6 6.9328 2.5804 -1.9587 10 8 7.3462 3.7093 -1.7769 11 7 7.3444 1.8769 -3.0321 12 6 8.2003 2.5099 -4.0386 13 1 8.8780 3.2104 -3.5505 14 6 9.0007 1.4524 -4.7542 15 1 8.8839 0.4129 -4.4859 16 6 9.8821 1.8121 -5.7515 17 7 10.0241 3.0780 -6.0787 18 14 10.8748 0.5013 -6.6381 19 1 10.1171 0.0231 -7.8224 20 1 12.1713 1.0759 -7.0789 21 1 11.1251 -0.6370 -5.7179 22 6 7.3303 3.2614 -5.0482 23 9 6.5872 4.2431 -4.3838 24 9 8.1476 3.8654 -6.0096 25 9 6.4604 2.3623 -5.6745 26 6 5.6392 0.6329 -1.2328 27 6 4.1127 0.5795 -1.2495 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 3.9561 0.7812 0.8895 32 1 3.5909 3.2432 0.8766 33 1 3.6312 3.2310 -0.9032 34 1 5.8948 2.4130 0.9762 35 1 5.8479 3.8569 -0.0658 36 1 7.0738 0.9515 -3.1382 37 1 10.6445 3.3310 -6.7801 38 1 6.0278 0.2293 -2.1677 39 1 6.0135 0.0449 -0.3948 40 1 3.7840 -0.4598 -1.2602 41 1 3.7425 1.0873 -2.1401 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912545.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:17:14 Heat of formation + Delta-G solvation = -267.120834 kcal Electronic energy + Delta-G solvation = -31229.902487 eV Core-core repulsion = 26309.145549 eV Total energy + Delta-G solvation = -4920.756938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.41102 -48.05104 -47.71957 -41.88136 -41.12176 -38.61528 -37.47103 -36.51271 -34.68578 -33.92686 -32.17765 -30.14720 -28.93489 -26.82245 -26.53017 -24.39775 -23.72920 -22.83761 -21.50151 -20.75918 -19.71588 -18.90897 -18.79512 -18.63727 -18.54875 -17.71039 -17.65809 -17.25472 -16.98495 -16.53021 -16.17809 -15.42503 -15.37776 -15.06746 -14.98657 -14.76037 -14.68526 -14.47395 -14.40698 -14.28710 -14.27535 -14.01078 -13.89882 -13.75559 -13.46100 -13.12737 -12.98721 -12.80256 -12.71282 -12.63689 -12.31502 -12.14581 -11.88967 -11.77973 -11.67961 -11.53488 -11.44885 -11.11136 -10.67239 -10.16232 -9.49797 -8.18765 -6.49920 1.12631 1.48457 1.49942 1.59587 1.65669 1.73676 2.14991 2.38641 2.56234 2.95883 2.99831 3.48925 3.64148 3.77354 3.79518 3.88770 4.02430 4.14466 4.22654 4.30251 4.32365 4.33410 4.37026 4.59723 4.68142 4.73699 4.77091 4.84347 4.89262 4.99910 5.06664 5.24031 5.37903 5.45637 5.51131 5.66469 5.68300 6.01332 6.55420 6.69338 7.06903 7.20651 7.64116 8.74026 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.003141 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.502599 B = 8913.222568 C = 9158.723654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.542 6.542 5 C -0.071 4.071 6 C -0.112 4.112 7 C 0.132 3.868 8 N -0.629 5.629 9 C 0.697 3.303 10 O -0.630 6.630 11 N -0.720 5.720 12 C 0.270 3.730 13 H 0.046 0.954 14 C -0.559 4.559 15 H 0.094 0.906 16 C 0.014 3.986 17 N -0.876 5.876 18 Si 0.985 3.015 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.254 1.254 22 C 0.411 3.589 23 F -0.222 7.222 24 F -0.151 7.151 25 F -0.203 7.203 26 C 0.108 3.892 27 C -0.120 4.120 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.101 0.899 35 H 0.070 0.930 36 H 0.408 0.592 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.120 0.880 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.602 -11.766 12.744 22.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.312 3.688 4 O -0.432 6.432 5 C -0.090 4.090 6 C -0.151 4.151 7 C 0.010 3.990 8 N -0.367 5.367 9 C 0.398 3.602 10 O -0.511 6.511 11 N -0.377 5.377 12 C 0.162 3.838 13 H 0.064 0.936 14 C -0.596 4.596 15 H 0.112 0.888 16 C -0.191 4.191 17 N -0.510 5.510 18 Si 0.808 3.192 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.178 1.178 22 C 0.355 3.645 23 F -0.204 7.204 24 F -0.132 7.132 25 F -0.185 7.185 26 C -0.014 4.014 27 C -0.159 4.159 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.151 0.849 31 H 0.167 0.833 32 H 0.113 0.887 33 H 0.064 0.936 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.247 0.753 37 H 0.078 0.922 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.463 -10.520 12.730 21.307 hybrid contribution -0.203 0.144 -1.131 1.158 sum -13.666 -10.375 11.598 20.711 Atomic orbital electron populations 1.23533 0.75116 1.05699 1.02250 1.86501 1.24661 1.32549 1.83537 1.24160 0.92622 0.81132 0.70907 1.90672 1.68058 1.37672 1.46770 1.21126 0.85748 0.98572 1.03526 1.21776 0.95116 0.94773 1.03393 1.21526 0.91870 0.96904 0.88738 1.47373 1.46315 1.14010 1.28970 1.16191 0.79828 0.83905 0.80238 1.90865 1.62142 1.20568 1.77478 1.45158 1.54271 1.15992 1.22232 1.19174 0.86205 0.94632 0.83791 0.93631 1.21221 1.23817 0.93691 1.20886 0.88797 1.26024 0.97741 0.98233 0.97135 1.70548 1.33316 1.17459 1.29672 0.85140 0.77191 0.78379 0.78487 1.19994 1.20991 1.17775 1.23442 0.79162 0.77633 0.84281 1.93055 1.79852 1.66174 1.81319 1.93374 1.69915 1.84405 1.65488 1.92979 1.72300 1.68597 1.84654 1.21842 0.94160 0.80907 1.04450 1.21846 0.95313 1.03093 0.95611 0.91908 0.92655 0.84896 0.83307 0.88676 0.93640 0.88071 0.91120 0.75254 0.92214 0.89625 0.87122 0.86201 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 113.37 1.20 1.52 16 2 O -0.36 -5.81 10.44 -51.47 -0.54 -6.35 16 3 C 0.47 9.33 7.26 71.24 0.52 9.85 16 4 O -0.54 -14.73 15.73 21.97 0.35 -14.38 16 5 C -0.07 -1.12 2.59 -11.51 -0.03 -1.15 16 6 C -0.11 -2.36 4.65 30.68 0.14 -2.21 16 7 C 0.13 3.13 6.42 86.37 0.55 3.69 16 8 N -0.63 -17.63 2.98 -837.76 -2.50 -20.13 16 9 C 0.70 28.12 7.74 179.05 1.39 29.50 16 10 O -0.63 -31.40 14.60 -3.99 -0.06 -31.46 16 11 N -0.72 -29.41 4.90 -461.41 -2.26 -31.67 16 12 C 0.27 13.70 2.23 44.25 0.10 13.80 16 13 H 0.05 2.69 7.51 -2.39 -0.02 2.68 16 14 C -0.56 -28.05 8.46 25.60 0.22 -27.83 16 15 H 0.09 4.27 7.74 -2.91 -0.02 4.25 16 16 C 0.01 0.71 5.20 84.65 0.44 1.15 16 17 N -0.88 -48.79 9.50 21.45 0.20 -48.58 16 18 Si 0.98 40.08 29.54 68.60 2.03 42.10 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 20 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 21 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 22 C 0.41 21.74 2.81 71.98 0.20 21.94 16 23 F -0.22 -11.88 15.88 44.97 0.71 -11.16 16 24 F -0.15 -8.64 12.91 44.97 0.58 -8.05 16 25 F -0.20 -10.08 16.94 44.97 0.76 -9.32 16 26 C 0.11 1.96 6.40 86.22 0.55 2.51 16 27 C -0.12 -1.91 5.28 30.53 0.16 -1.75 16 28 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 29 H 0.05 0.76 8.13 -2.38 -0.02 0.74 16 30 H 0.13 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.15 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.78 8.07 -2.39 -0.02 1.76 16 33 H 0.04 1.26 8.13 -2.38 -0.02 1.24 16 34 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 2.14 7.03 -2.39 -0.02 2.12 16 36 H 0.41 13.77 6.00 -92.71 -0.56 13.21 16 37 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 38 H 0.09 1.61 5.57 -2.39 -0.01 1.60 16 39 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.12 1.25 8.08 -2.38 -0.02 1.23 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -74.31 347.74 5.25 -69.06 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.53 Total: 18.92 kcal Atomic # 6 Polarization: 45.58 SS G_CDS: 5.44 Total: 51.01 kcal Atomic # 7 Polarization: -95.83 SS G_CDS: -4.55 Total: -100.38 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.25 Total: -52.19 kcal Atomic # 9 Polarization: -30.59 SS G_CDS: 2.06 Total: -28.53 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.10 kcal Total: -74.31 5.25 -69.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912545.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -198.057 kcal (2) G-P(sol) polarization free energy of solvation -74.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -272.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -267.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds