Wall clock time and date at job start Tue Mar 31 2020 20:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34228 * 116.99989 * 2 1 4 4 O 1.20829 * 119.99889 * 0.02562 * 3 2 1 5 5 C 1.50694 * 120.00214 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47470 * 185.85100 * 5 3 2 7 7 H 1.08998 * 109.99763 * 306.98372 * 6 5 3 8 8 C 1.54327 * 109.87845 * 68.07941 * 6 5 3 9 9 C 1.55154 * 102.94099 * 141.61520 * 8 6 5 10 10 C 1.54913 * 101.58094 * 324.49179 * 9 8 6 11 11 N 1.47019 * 109.88149 * 185.88352 * 6 5 3 12 12 C 1.34776 * 125.65013 * 61.61236 * 11 6 5 13 13 O 1.21585 * 119.99577 * 5.16036 * 12 11 6 14 14 N 1.34775 * 120.00285 * 185.16444 * 12 11 6 15 15 C 1.46495 * 120.00247 * 179.97438 * 14 12 11 16 16 H 1.09002 * 109.47019 * 34.99833 * 15 14 12 17 17 C 1.50698 * 109.47440 * 154.99461 * 15 14 12 18 18 H 1.07996 * 119.99611 * 0.02562 * 17 15 14 19 19 C 1.37879 * 120.00314 * 179.97438 * 17 15 14 20 20 N 1.31517 * 119.99838 * 0.02562 * 19 17 15 21 21 Si 1.86792 * 120.00156 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47247 * 60.00230 * 21 19 17 23 23 H 1.48496 * 109.47266 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47394 * 300.00323 * 21 19 17 25 25 C 1.53000 * 109.47316 * 274.99916 * 15 14 12 26 26 F 1.39903 * 109.47152 * 59.99556 * 25 15 14 27 27 F 1.39897 * 109.47351 * 179.97438 * 25 15 14 28 28 F 1.39896 * 109.46720 * 299.99937 * 25 15 14 29 29 H 1.09003 * 109.46867 * 299.99891 * 1 2 3 30 30 H 1.08995 * 109.47212 * 59.99990 * 1 2 3 31 31 H 1.09000 * 109.46893 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47106 * 65.85086 * 5 3 2 33 33 H 1.09000 * 109.46865 * 305.85388 * 5 3 2 34 34 H 1.09003 * 110.71760 * 259.97159 * 8 6 5 35 35 H 1.08992 * 110.72280 * 23.24583 * 8 6 5 36 36 H 1.09002 * 111.00051 * 206.41890 * 9 8 6 37 37 H 1.08995 * 111.01051 * 82.56929 * 9 8 6 38 38 H 1.08999 * 110.36908 * 278.17446 * 10 9 8 39 39 H 1.09002 * 110.45770 * 155.90155 * 10 9 8 40 40 H 0.96998 * 119.99747 * 359.97438 * 14 12 11 41 41 H 0.97000 * 119.99821 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0006 2.7346 0.1466 7 1 3.5109 3.3473 -0.6102 8 6 3.6377 3.2506 1.5551 9 6 4.8518 4.1447 1.9210 10 6 6.0196 3.3676 1.2636 11 7 5.4604 2.8385 0.0064 12 6 6.1699 2.5046 -1.0898 13 8 5.5951 2.1648 -2.1058 14 7 7.5167 2.5474 -1.0596 15 6 8.2879 2.1840 -2.2509 16 1 7.7500 2.5035 -3.1435 17 6 9.6327 2.8626 -2.2051 18 1 9.8875 3.5004 -1.3717 19 6 10.5381 2.6683 -3.2266 20 7 10.2280 1.8912 -4.2413 21 14 12.2052 3.5090 -3.1695 22 1 12.9378 3.0736 -1.9532 23 1 12.9875 3.1397 -4.3765 24 1 12.0162 4.9815 -3.1328 25 6 8.4832 0.6670 -2.2889 26 9 7.2348 0.0370 -2.3315 27 9 9.2193 0.3199 -3.4269 28 9 9.1737 0.2569 -1.1434 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 3.9508 0.8743 -0.9385 33 1 3.9609 0.6927 0.8321 34 1 2.7205 3.8388 1.5258 35 1 3.5435 2.4220 2.2569 36 1 4.9814 4.2042 3.0016 37 1 4.7501 5.1389 1.4860 38 1 6.3424 2.5505 1.9087 39 1 6.8537 4.0378 1.0554 40 1 7.9752 2.8188 -0.2491 41 1 10.8649 1.7548 -4.9601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932912916.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:32 Heat of formation + Delta-G solvation = -266.045015 kcal Electronic energy + Delta-G solvation = -31340.957379 eV Core-core repulsion = 26420.247092 eV Total energy + Delta-G solvation = -4920.710287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.38640 -48.01667 -47.70196 -41.86847 -41.07571 -38.84300 -37.49189 -36.46589 -34.57548 -33.06024 -32.49631 -29.90200 -29.02803 -27.15329 -26.57416 -24.63467 -23.11964 -22.46601 -21.70870 -20.84759 -19.60738 -18.89618 -18.76722 -18.60456 -18.49625 -17.98542 -17.59427 -17.55163 -16.94258 -16.59306 -16.17146 -15.65421 -15.19550 -15.08311 -14.94576 -14.58041 -14.53452 -14.43224 -14.27241 -14.21014 -14.13298 -13.99963 -13.87290 -13.82421 -13.42127 -13.15244 -12.98568 -12.82142 -12.72727 -12.58143 -12.22927 -12.09179 -11.90690 -11.80750 -11.65452 -11.63432 -11.58038 -11.19372 -10.66398 -10.17942 -9.55945 -8.19614 -6.50878 1.08884 1.37786 1.48816 1.50583 1.59231 1.85937 2.10315 2.37854 2.57457 2.95894 3.06798 3.51482 3.57835 3.79184 3.81271 3.89382 3.90582 4.12936 4.19458 4.25666 4.28900 4.32771 4.37906 4.59984 4.67738 4.69754 4.81976 4.86936 4.94569 5.02637 5.15235 5.30526 5.32907 5.39225 5.43736 5.58082 5.66263 6.11086 6.53917 6.64741 7.04875 7.19484 7.60778 8.72916 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018165 B = 0.003458 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.027139 B = 8095.555957 C = 9045.018531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.368 6.368 3 C 0.477 3.523 4 O -0.525 6.525 5 C -0.126 4.126 6 C 0.166 3.834 7 H 0.058 0.942 8 C -0.115 4.115 9 C -0.117 4.117 10 C 0.087 3.913 11 N -0.632 5.632 12 C 0.712 3.288 13 O -0.625 6.625 14 N -0.715 5.715 15 C 0.271 3.729 16 H 0.045 0.955 17 C -0.562 4.562 18 H 0.092 0.908 19 C 0.015 3.985 20 N -0.875 5.875 21 Si 0.984 3.016 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.263 1.263 25 C 0.414 3.586 26 F -0.218 7.218 27 F -0.151 7.151 28 F -0.202 7.202 29 H 0.071 0.929 30 H 0.058 0.942 31 H 0.130 0.870 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.762 1.019 15.582 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C 0.320 3.680 4 O -0.415 6.415 5 C -0.165 4.165 6 C 0.062 3.938 7 H 0.076 0.924 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.035 4.035 11 N -0.370 5.370 12 C 0.414 3.586 13 O -0.505 6.505 14 N -0.370 5.370 15 C 0.163 3.837 16 H 0.062 0.938 17 C -0.599 4.599 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.509 5.509 21 Si 0.807 3.193 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.187 1.187 25 C 0.357 3.643 26 F -0.200 7.200 27 F -0.132 7.132 28 F -0.184 7.184 29 H 0.090 0.910 30 H 0.077 0.923 31 H 0.148 0.852 32 H 0.109 0.891 33 H 0.145 0.855 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.245 0.755 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.287 0.930 14.582 19.091 hybrid contribution 0.763 -0.193 -0.520 0.944 sum -11.524 0.736 14.062 18.196 Atomic orbital electron populations 1.23574 0.74483 1.05717 1.02745 1.86519 1.25350 1.32849 1.83709 1.23524 0.91746 0.81369 0.71341 1.90632 1.67610 1.36760 1.46479 1.21792 0.87774 1.00455 1.06484 1.21178 0.79187 0.93209 1.00253 0.92402 1.22705 0.99616 1.00752 0.92196 1.22764 0.91885 0.98098 1.02705 1.22668 0.98193 0.98577 0.84014 1.47635 1.07128 1.68573 1.13714 1.15763 0.81890 0.78210 0.82762 1.90882 1.70456 1.56588 1.32622 1.45000 1.03688 1.71778 1.16494 1.19173 0.93609 0.84799 0.86108 0.93777 1.21182 0.97914 1.31568 1.09209 0.88962 1.26002 1.03372 0.95041 0.94595 1.70536 1.37289 1.33653 1.09382 0.85204 0.77295 0.78918 0.77867 1.18880 1.21097 1.18725 1.23300 0.72400 0.94985 0.73614 1.93061 1.44655 1.85947 1.96351 1.93373 1.76391 1.93476 1.50000 1.92980 1.80574 1.92553 1.52324 0.91018 0.92338 0.85228 0.89139 0.85507 0.89159 0.88906 0.86358 0.90552 0.89558 0.89971 0.75464 0.92167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 16 2 O -0.37 -8.66 10.57 -51.40 -0.54 -9.20 16 3 C 0.48 12.54 7.68 71.23 0.55 13.09 16 4 O -0.53 -15.29 14.82 21.95 0.33 -14.96 16 5 C -0.13 -3.41 5.30 29.85 0.16 -3.25 16 6 C 0.17 4.48 2.49 45.34 0.11 4.59 16 7 H 0.06 1.88 7.81 -2.39 -0.02 1.86 16 8 C -0.11 -2.01 5.60 31.78 0.18 -1.83 16 9 C -0.12 -1.64 7.08 31.99 0.23 -1.42 16 10 C 0.09 1.71 6.47 86.86 0.56 2.27 16 11 N -0.63 -18.94 3.06 -805.88 -2.47 -21.41 16 12 C 0.71 29.20 7.74 179.06 1.39 30.59 16 13 O -0.62 -31.27 14.09 -3.98 -0.06 -31.33 16 14 N -0.72 -29.55 4.94 -461.43 -2.28 -31.83 16 15 C 0.27 13.76 2.21 44.25 0.10 13.86 16 16 H 0.04 2.61 7.58 -2.39 -0.02 2.59 16 17 C -0.56 -28.35 8.47 25.60 0.22 -28.13 16 18 H 0.09 4.24 7.74 -2.91 -0.02 4.22 16 19 C 0.02 0.79 5.20 84.65 0.44 1.23 16 20 N -0.87 -48.68 9.50 21.45 0.20 -48.47 16 21 Si 0.98 40.27 29.54 68.60 2.03 42.30 16 22 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 23 H -0.29 -11.69 7.11 99.48 0.71 -10.98 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 C 0.41 21.61 2.81 71.98 0.20 21.81 16 26 F -0.22 -11.40 15.68 44.97 0.70 -10.69 16 27 F -0.15 -8.59 12.91 44.97 0.58 -8.01 16 28 F -0.20 -9.90 16.94 44.97 0.76 -9.13 16 29 H 0.07 1.01 8.13 -2.39 -0.02 0.99 16 30 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 31 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.09 3.13 6.86 -2.39 -0.02 3.11 16 33 H 0.13 2.76 8.00 -2.39 -0.02 2.74 16 34 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 35 H 0.09 1.30 7.75 -2.39 -0.02 1.28 16 36 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.56 7.50 -2.39 -0.02 1.54 16 40 H 0.41 14.15 7.14 -92.71 -0.66 13.49 16 41 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -71.03 350.38 5.00 -66.03 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.42 Total: 22.28 kcal Atomic # 6 Polarization: 49.11 SS G_CDS: 5.32 Total: 54.43 kcal Atomic # 7 Polarization: -97.17 SS G_CDS: -4.55 Total: -101.71 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -0.27 Total: -55.49 kcal Atomic # 9 Polarization: -29.89 SS G_CDS: 2.05 Total: -27.84 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 2.03 Total: 42.30 kcal Total: -71.03 5.00 -66.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912916.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.012 kcal (2) G-P(sol) polarization free energy of solvation -71.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -271.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -266.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds