Wall clock time and date at job start Tue Mar 31 2020 20:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34226 * 117.00127 * 2 1 4 4 O 1.20832 * 119.99849 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00329 * 180.02562 * 3 2 1 6 6 C 1.52997 * 109.47596 * 184.27090 * 5 3 2 7 7 H 1.09003 * 109.99730 * 52.86984 * 6 5 3 8 8 C 1.54342 * 109.98859 * 291.83878 * 6 5 3 9 9 C 1.55158 * 103.02009 * 218.66458 * 8 6 5 10 10 C 1.54914 * 101.58233 * 35.30417 * 9 8 6 11 11 N 1.47018 * 109.88465 * 173.97087 * 6 5 3 12 12 C 1.34772 * 125.65007 * 298.38966 * 11 6 5 13 13 O 1.21586 * 119.99639 * 354.57820 * 12 11 6 14 14 N 1.34773 * 120.00338 * 174.57267 * 12 11 6 15 15 C 1.46504 * 120.00285 * 180.02562 * 14 12 11 16 16 H 1.09000 * 109.46626 * 324.99649 * 15 14 12 17 17 C 1.50696 * 109.47317 * 205.00280 * 15 14 12 18 18 H 1.08005 * 120.00269 * 359.97438 * 17 15 14 19 19 C 1.37869 * 120.00345 * 179.97438 * 17 15 14 20 20 N 1.31523 * 120.00015 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 120.00482 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46958 * 60.00055 * 21 19 17 23 23 H 1.48493 * 109.47215 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47055 * 300.00328 * 21 19 17 25 25 C 1.52996 * 109.47258 * 85.00011 * 15 14 12 26 26 F 1.39898 * 109.47184 * 60.00163 * 25 15 14 27 27 F 1.39908 * 109.46898 * 300.00140 * 25 15 14 28 28 F 1.39900 * 109.46996 * 180.02562 * 25 15 14 29 29 H 1.08993 * 109.46860 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46867 * 300.00060 * 1 2 3 31 31 H 1.09004 * 109.47060 * 59.99914 * 1 2 3 32 32 H 1.08996 * 109.47496 * 64.26661 * 5 3 2 33 33 H 1.09004 * 109.47170 * 304.27012 * 5 3 2 34 34 H 1.08996 * 110.84993 * 100.19651 * 8 6 5 35 35 H 1.08994 * 110.66630 * 337.04387 * 8 6 5 36 36 H 1.08996 * 111.00272 * 277.23243 * 9 8 6 37 37 H 1.08995 * 111.03871 * 153.39578 * 9 8 6 38 38 H 1.08997 * 110.36605 * 204.15327 * 10 9 8 39 39 H 1.09005 * 110.45839 * 81.87596 * 10 9 8 40 40 H 0.96995 * 120.00012 * 0.02562 * 14 12 11 41 41 H 0.96994 * 120.00328 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0004 2.7380 0.1070 7 1 3.5168 3.2084 0.9632 8 6 3.6270 3.4955 -1.1849 9 6 4.8418 4.4359 -1.4023 10 6 6.0119 3.5537 -0.9000 11 7 5.4613 2.8168 0.2522 12 6 6.1789 2.2966 1.2674 13 8 5.6115 1.7878 2.2148 14 7 7.5255 2.3402 1.2326 15 6 8.3056 1.7742 2.3360 16 1 7.7769 1.9362 3.2752 17 6 9.6528 2.4468 2.3955 18 1 9.9032 3.2184 1.6825 19 6 10.5659 2.0772 3.3602 20 7 10.2609 1.1379 4.2288 21 14 12.2362 2.9104 3.4336 22 1 12.0531 4.3678 3.6525 23 1 13.0263 2.3377 4.5528 24 1 12.9566 2.6888 2.1541 25 6 8.4947 0.2730 2.1094 26 9 9.1733 0.0651 0.9039 27 9 7.2439 -0.3514 2.0542 28 9 9.2391 -0.2676 3.1634 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 3.9522 0.8485 -0.9265 33 1 3.9598 0.7158 0.8484 34 1 2.7127 4.0724 -1.0458 35 1 3.5211 2.8030 -2.0199 36 1 4.7483 5.3402 -0.8011 37 1 4.9626 4.6814 -2.4574 38 1 6.8494 4.1769 -0.5866 39 1 6.3272 2.8593 -1.6788 40 1 7.9782 2.7463 0.4770 41 1 10.9031 0.8781 4.9077 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932912917.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:36 Heat of formation + Delta-G solvation = -245.804689 kcal Electronic energy + Delta-G solvation = -31346.667977 eV Core-core repulsion = 26426.835377 eV Total energy + Delta-G solvation = -4919.832601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.31788 -45.97046 -45.58746 -40.76554 -39.78222 -37.54911 -36.45141 -34.65185 -32.80313 -31.83450 -31.32615 -28.35720 -27.95058 -26.24752 -24.56597 -23.27174 -21.60743 -21.40377 -20.49485 -19.31373 -18.25208 -17.53620 -17.04078 -16.83511 -16.74643 -16.61565 -16.49423 -15.81132 -15.62541 -14.90355 -14.69427 -14.32452 -14.06381 -13.59867 -13.50115 -13.26694 -13.01131 -12.93677 -12.75978 -12.48336 -12.40614 -12.36882 -12.26916 -12.23901 -11.96616 -11.87074 -11.78266 -11.27328 -11.15667 -10.95489 -10.91345 -10.87410 -10.85551 -10.75621 -10.53668 -10.39388 -9.67488 -9.53642 -8.72392 -8.54528 -8.12982 -6.23246 -4.47349 2.14587 2.50767 3.08036 3.19855 3.25029 3.27041 3.69474 4.17583 4.37011 4.45574 4.57669 4.70833 4.74465 4.83646 4.93636 4.93985 5.00580 5.04878 5.20612 5.28052 5.35411 5.51999 5.62030 5.71556 5.81549 5.83007 5.87202 5.90081 5.98299 6.16694 6.21817 6.29696 6.47133 6.89051 7.20961 7.39183 7.61782 7.65868 7.67198 8.48473 8.58661 9.12142 9.23492 10.68369 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018004 B = 0.003474 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.870266 B = 8057.848046 C = 9035.147269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.359 6.359 3 C 0.471 3.529 4 O -0.510 6.510 5 C -0.131 4.131 6 C 0.173 3.827 7 H 0.084 0.916 8 C -0.122 4.122 9 C -0.131 4.131 10 C 0.098 3.902 11 N -0.638 5.638 12 C 0.717 3.283 13 O -0.579 6.579 14 N -0.722 5.722 15 C 0.262 3.738 16 H 0.086 0.914 17 C -0.553 4.553 18 H 0.076 0.924 19 C 0.066 3.934 20 N -0.839 5.839 21 Si 0.915 3.085 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.416 3.584 26 F -0.210 7.210 27 F -0.217 7.217 28 F -0.137 7.137 29 H 0.099 0.901 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.106 0.894 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.394 0.606 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.105 2.426 -11.955 17.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.276 6.276 3 C 0.315 3.685 4 O -0.398 6.398 5 C -0.170 4.170 6 C 0.069 3.931 7 H 0.102 0.898 8 C -0.160 4.160 9 C -0.169 4.169 10 C -0.025 4.025 11 N -0.378 5.378 12 C 0.419 3.581 13 O -0.456 6.456 14 N -0.375 5.375 15 C 0.156 3.844 16 H 0.103 0.897 17 C -0.590 4.590 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.472 5.472 21 Si 0.742 3.258 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 C 0.360 3.640 26 F -0.192 7.192 27 F -0.199 7.199 28 F -0.119 7.119 29 H 0.118 0.882 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.141 0.859 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.228 0.772 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.594 2.141 -10.954 16.828 hybrid contribution 0.964 0.151 -0.380 1.048 sum -11.630 2.291 -11.334 16.400 Atomic orbital electron populations 1.23245 0.76542 1.03584 1.02444 1.86543 1.23297 1.33641 1.84093 1.23670 0.91941 0.81216 0.71721 1.90640 1.67326 1.36157 1.45638 1.21893 0.87315 1.00765 1.06990 1.20999 0.80359 0.92494 0.99298 0.89823 1.22710 0.98913 0.98472 0.95953 1.22767 0.94198 0.98187 1.01750 1.22276 0.97134 0.94519 0.88587 1.47650 1.06350 1.60076 1.23763 1.15605 0.82048 0.78914 0.81522 1.90918 1.70144 1.50886 1.33647 1.45300 1.03450 1.63165 1.25556 1.19613 0.93344 0.84020 0.87422 0.89682 1.20826 0.97553 1.23103 1.17490 0.90590 1.25071 0.99605 0.94521 0.95140 1.70392 1.35926 1.25565 1.15353 0.86272 0.82048 0.79510 0.78003 1.19807 1.20874 1.19835 1.23163 0.72557 0.94515 0.73789 1.92982 1.81263 1.96349 1.48609 1.93069 1.44405 1.86042 1.96348 1.93401 1.75556 1.87901 1.54994 0.88227 0.91867 0.92011 0.87550 0.85922 0.89212 0.90990 0.90430 0.89919 0.90468 0.91583 0.77173 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.56 101.05 1.07 1.38 16 2 O -0.36 -4.43 10.57 -39.25 -0.41 -4.85 16 3 C 0.47 6.26 7.78 36.00 0.28 6.54 16 4 O -0.51 -7.35 14.53 -18.75 -0.27 -7.62 16 5 C -0.13 -1.76 5.30 -27.89 -0.15 -1.91 16 6 C 0.17 2.37 2.49 -66.95 -0.17 2.20 16 7 H 0.08 1.30 7.97 -51.93 -0.41 0.88 16 8 C -0.12 -1.25 5.45 -24.89 -0.14 -1.38 16 9 C -0.13 -1.17 7.09 -24.58 -0.17 -1.34 16 10 C 0.10 1.10 6.47 -2.52 -0.02 1.08 16 11 N -0.64 -9.74 3.06 -168.68 -0.52 -10.26 16 12 C 0.72 14.40 7.73 -86.93 -0.67 13.73 16 13 O -0.58 -13.76 14.10 5.29 0.07 -13.68 16 14 N -0.72 -14.83 4.94 -59.82 -0.30 -15.13 16 15 C 0.26 6.50 2.21 -69.08 -0.15 6.35 16 16 H 0.09 2.38 7.58 -51.93 -0.39 1.98 16 17 C -0.55 -13.99 8.46 -34.45 -0.29 -14.28 16 18 H 0.08 1.81 7.74 -52.48 -0.41 1.40 16 19 C 0.07 1.69 5.20 -17.82 -0.09 1.60 16 20 N -0.84 -22.92 9.51 55.43 0.53 -22.39 16 21 Si 0.92 19.94 29.54 -169.99 -5.02 14.91 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 C 0.42 10.65 2.81 37.16 0.10 10.75 16 26 F -0.21 -5.16 16.94 2.25 0.04 -5.12 16 27 F -0.22 -5.49 15.68 2.25 0.04 -5.46 16 28 F -0.14 -3.80 12.92 2.25 0.03 -3.77 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.56 8.13 -51.93 -0.42 0.13 16 31 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 32 H 0.11 1.22 8.00 -51.93 -0.42 0.81 16 33 H 0.12 2.00 6.87 -51.93 -0.36 1.65 16 34 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 35 H 0.07 0.66 7.75 -51.93 -0.40 0.25 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.84 7.50 -51.93 -0.39 0.45 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.39 7.04 7.14 -40.82 -0.29 6.75 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 350.04 15.07 5.28 5.28 Total: -1.00 -31.57 350.04 -6.08 -37.65 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.14 Total: 5.71 kcal Atomic # 6 Polarization: 25.12 SS G_CDS: -0.40 Total: 24.72 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -0.29 Total: -47.78 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.61 Total: -26.15 kcal Atomic # 9 Polarization: -14.45 SS G_CDS: 0.10 Total: -14.35 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.57 -6.08 -37.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932912917.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -208.152 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -245.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds