Wall clock time and date at job start Tue Mar 31 2020 21:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30856 * 125.89535 * 2 1 4 4 N 1.40074 * 108.22465 * 180.29293 * 3 2 1 5 5 C 1.46498 * 126.03786 * 179.69414 * 4 3 2 6 6 C 1.50703 * 109.47447 * 270.02291 * 5 4 3 7 7 O 1.21275 * 119.99598 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00003 * 179.97438 * 6 5 4 9 9 C 1.46504 * 119.99661 * 180.02562 * 8 6 5 10 10 H 1.09002 * 115.51583 * 9.41271 * 9 8 6 11 11 C 1.52999 * 117.43992 * 224.00262 * 9 8 6 12 12 H 1.09005 * 119.54190 * 4.11545 * 11 9 8 13 13 C 1.54383 * 118.12457 * 160.80962 * 11 9 8 14 14 N 1.48141 * 104.62127 * 87.18824 * 13 11 9 15 15 C 1.36939 * 127.84060 * 140.41521 * 14 13 11 16 16 H 1.07997 * 119.99828 * 344.89954 * 15 14 13 17 17 C 1.38806 * 119.99977 * 164.90407 * 15 14 13 18 18 N 1.31625 * 120.00295 * 350.65849 * 17 15 14 19 19 Si 1.86802 * 120.00244 * 170.66319 * 17 15 14 20 20 H 1.48502 * 109.47131 * 89.99261 * 19 17 15 21 21 H 1.48491 * 109.47601 * 209.99744 * 19 17 15 22 22 H 1.48501 * 109.46796 * 330.00062 * 19 17 15 23 23 C 1.51692 * 104.54629 * 320.19334 * 14 13 11 24 24 C 1.53000 * 117.44246 * 154.83536 * 9 8 6 25 25 H 1.08996 * 119.53974 * 355.87593 * 24 9 8 26 26 C 1.35046 * 107.93034 * 359.71698 * 4 3 2 27 27 C 1.50696 * 126.14072 * 180.02562 * 26 4 3 28 28 C 1.35379 * 107.72610 * 0.02562 * 26 4 3 29 29 Cl 1.73594 * 126.04852 * 180.02562 * 28 26 4 30 30 H 1.08994 * 109.46882 * 270.17501 * 1 2 3 31 31 H 1.08995 * 109.46860 * 30.17589 * 1 2 3 32 32 H 1.08995 * 109.46855 * 150.17326 * 1 2 3 33 33 H 1.09001 * 109.46968 * 30.02606 * 5 4 3 34 34 H 1.09005 * 109.47353 * 150.02218 * 5 4 3 35 35 H 0.96995 * 120.00055 * 0.02562 * 8 6 5 36 36 H 1.09006 * 110.40894 * 205.97625 * 13 11 9 37 37 H 1.09006 * 110.40524 * 328.39899 * 13 11 9 38 38 H 0.96997 * 120.00321 * 180.02562 * 18 17 15 39 39 H 1.09008 * 111.95721 * 281.12642 * 23 14 13 40 40 H 1.08998 * 110.49689 * 157.55505 * 23 14 13 41 41 H 1.08995 * 109.47572 * 270.01972 * 27 26 4 42 42 H 1.08997 * 109.46843 * 30.02618 * 27 26 4 43 43 H 1.09007 * 109.46863 * 150.02237 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0600 0.0000 4 7 3.6089 0.6349 -0.0068 5 6 4.7897 1.5020 -0.0154 6 6 5.1861 1.7969 -1.4392 7 8 4.5451 1.3291 -2.3563 8 7 6.2523 2.5812 -1.6931 9 6 6.6373 2.8682 -3.0772 10 1 5.9261 2.5476 -3.8385 11 6 8.1252 2.7921 -3.4255 12 1 8.8384 2.4662 -2.6683 13 6 8.5181 2.6398 -4.9107 14 7 8.5866 4.0279 -5.4235 15 6 9.5010 4.5575 -6.2946 16 1 10.4196 4.0284 -6.5009 17 6 9.2471 5.7743 -6.9123 18 7 8.0585 6.3300 -6.8082 19 14 10.5924 6.6234 -7.8916 20 1 10.5330 6.1751 -9.3061 21 1 10.3967 8.0940 -7.8297 22 1 11.9170 6.2756 -7.3174 23 6 7.4123 4.7332 -4.7720 24 6 7.4169 4.1584 -3.3392 25 1 7.6022 4.8504 -2.5177 26 6 3.6150 -0.7156 -0.0045 27 6 4.8360 -1.5988 -0.0094 28 6 2.3274 -1.1336 0.0029 29 17 1.7892 -2.7840 0.0091 30 1 -0.3633 0.0031 1.0276 31 1 -0.3633 0.8884 -0.5165 32 1 -0.3633 -0.8915 -0.5111 33 1 4.5588 2.4353 0.4982 34 1 5.6124 1.0006 0.4944 35 1 6.7647 2.9555 -0.9596 36 1 9.4897 2.1536 -4.9989 37 1 7.7583 2.0729 -5.4486 38 1 7.8810 7.1802 -7.2402 39 1 6.4708 4.5031 -5.2709 40 1 7.5784 5.8103 -4.7500 41 1 5.1253 -1.8133 -1.0381 42 1 5.6545 -1.0899 0.4998 43 1 4.6113 -2.5322 0.5069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000962598628.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:39 Heat of formation + Delta-G solvation = 74.943099 kcal Electronic energy + Delta-G solvation = -26117.588055 eV Core-core repulsion = 22226.522778 eV Total energy + Delta-G solvation = -3891.065277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.54427 -41.07391 -39.72536 -37.38990 -36.05191 -35.22862 -34.40000 -32.99543 -32.12218 -30.73942 -28.93692 -28.04101 -27.85294 -26.86353 -23.73508 -22.10981 -22.00213 -21.54615 -20.82991 -20.55637 -18.88537 -18.53723 -18.22575 -17.32091 -16.69911 -16.57079 -16.39594 -15.67093 -15.44804 -15.16642 -15.02198 -14.82385 -14.64019 -14.25204 -14.19480 -13.77309 -13.53796 -13.36544 -13.33042 -13.26323 -13.15274 -12.91921 -12.89106 -12.79867 -12.72943 -12.22995 -12.17225 -12.05847 -11.88057 -11.66608 -11.45917 -11.31493 -10.87349 -10.74734 -10.20066 -9.78534 -9.36116 -8.95148 -7.92709 -5.28311 0.52153 0.93275 1.34564 1.46340 1.47600 1.48163 1.57332 1.65429 2.00405 2.47767 2.81767 3.27115 3.39826 3.47699 3.51525 3.57955 3.79162 3.86407 3.90946 4.00811 4.10278 4.15137 4.29173 4.36395 4.49683 4.61802 4.67554 4.75702 4.76223 4.86423 4.88829 4.96971 4.97196 5.03015 5.25353 5.35227 5.42415 5.43619 5.48765 5.62317 5.76874 6.10757 6.40681 6.51028 6.93803 7.09218 7.63861 8.43210 9.21926 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.027912 B = 0.001964 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.903429 B =14255.962157 C =14506.968139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.082 3.918 3 N -0.312 5.312 4 N -0.356 5.356 5 C 0.118 3.882 6 C 0.498 3.502 7 O -0.575 6.575 8 N -0.673 5.673 9 C 0.115 3.885 10 H 0.097 0.903 11 C -0.158 4.158 12 H 0.144 0.856 13 C 0.148 3.852 14 N -0.622 5.622 15 C -0.238 4.238 16 H 0.084 0.916 17 C -0.066 4.066 18 N -0.950 5.950 19 Si 0.981 3.019 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.266 1.266 23 C 0.185 3.815 24 C -0.176 4.176 25 H 0.131 0.869 26 C 0.114 3.886 27 C -0.097 4.097 28 C -0.210 4.210 29 Cl -0.035 7.035 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.425 0.575 36 H 0.065 0.935 37 H 0.012 0.988 38 H 0.249 0.751 39 H 0.000 1.000 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.576 -15.481 23.194 28.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 N -0.134 5.134 4 N -0.138 5.138 5 C -0.006 4.006 6 C 0.284 3.716 7 O -0.453 6.453 8 N -0.324 5.324 9 C 0.007 3.993 10 H 0.115 0.885 11 C -0.179 4.179 12 H 0.161 0.839 13 C 0.023 3.977 14 N -0.348 5.348 15 C -0.366 4.366 16 H 0.101 0.899 17 C -0.259 4.259 18 N -0.599 5.599 19 Si 0.809 3.191 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.190 1.190 23 C 0.061 3.939 24 C -0.197 4.197 25 H 0.149 0.851 26 C -0.015 4.015 27 C -0.155 4.155 28 C -0.248 4.248 29 Cl -0.007 7.007 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.172 0.828 34 H 0.193 0.807 35 H 0.263 0.737 36 H 0.084 0.916 37 H 0.030 0.970 38 H 0.058 0.942 39 H 0.018 0.982 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.123 0.877 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -7.845 -14.401 22.406 27.765 hybrid contribution 0.439 0.042 -1.009 1.101 sum -7.406 -14.359 21.397 26.811 Atomic orbital electron populations 1.20333 0.84329 1.04101 1.04476 1.22769 0.98652 0.88943 0.98158 1.77392 0.86936 1.22669 1.26400 1.47806 1.05036 1.03903 1.57050 1.21867 0.86430 0.98943 0.93326 1.21429 0.79788 0.78061 0.92346 1.90792 1.53732 1.52643 1.48106 1.45009 1.30216 1.50047 1.07127 1.21342 0.93301 0.99759 0.84856 0.88489 1.24265 0.94454 1.00786 0.98383 0.83858 1.21219 0.98724 0.86590 0.91182 1.46368 1.30767 1.05940 1.51681 1.19411 0.96924 1.03277 1.17037 0.89879 1.25747 0.98896 1.00106 1.01176 1.70091 1.21597 1.19196 1.48978 0.85051 0.78783 0.77116 0.78172 1.21416 1.21945 1.19034 1.21415 0.87978 0.97194 0.87354 1.24251 1.04787 0.91076 0.99561 0.85117 1.21254 0.97291 0.84909 0.98004 1.20704 0.91925 0.98486 1.04395 1.20501 0.92572 0.87416 1.24311 1.98294 1.89744 1.14778 1.97854 0.88378 0.90554 0.89364 0.82750 0.80685 0.73684 0.91626 0.97003 0.94156 0.98243 0.92107 0.89967 0.87728 0.87971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.25 10.31 71.24 0.73 -0.51 16 2 C 0.08 1.95 7.22 43.12 0.31 2.26 16 3 N -0.31 -8.28 12.57 -47.33 -0.60 -8.88 16 4 N -0.36 -7.66 3.10 -338.27 -1.05 -8.71 16 5 C 0.12 1.57 6.73 85.63 0.58 2.15 16 6 C 0.50 11.34 7.90 87.66 0.69 12.03 16 7 O -0.57 -20.33 16.00 -3.01 -0.05 -20.38 16 8 N -0.67 -13.38 5.56 -442.53 -2.46 -15.85 16 9 C 0.11 3.48 5.97 44.99 0.27 3.75 16 10 H 0.10 3.74 7.40 -2.39 -0.02 3.72 16 11 C -0.16 -4.91 7.05 -9.94 -0.07 -4.98 16 12 H 0.14 3.42 8.14 -2.38 -0.02 3.40 16 13 C 0.15 6.06 7.05 86.53 0.61 6.67 16 14 N -0.62 -31.94 3.45 -678.57 -2.34 -34.28 16 15 C -0.24 -13.24 10.36 84.03 0.87 -12.37 16 16 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 17 C -0.07 -3.73 5.41 84.86 0.46 -3.28 16 18 N -0.95 -57.37 10.84 21.65 0.23 -57.14 16 19 Si 0.98 45.25 29.56 68.60 2.03 47.28 16 20 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.19 9.03 5.91 85.82 0.51 9.54 16 24 C -0.18 -6.07 6.96 -9.94 -0.07 -6.14 16 25 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 26 C 0.11 2.29 6.94 41.40 0.29 2.58 16 27 C -0.10 -1.19 9.95 71.23 0.71 -0.48 16 28 C -0.21 -4.66 6.63 22.02 0.15 -4.51 16 29 Cl -0.03 -0.64 28.58 -2.72 -0.08 -0.72 16 30 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.32 8.01 -2.39 -0.02 1.30 16 33 H 0.15 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.18 0.53 7.05 -2.38 -0.02 0.51 16 35 H 0.42 4.59 8.83 -92.71 -0.82 3.77 16 36 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 37 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.25 14.60 8.31 -92.71 -0.77 13.82 16 39 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 40 H 0.06 3.32 6.58 -2.39 -0.02 3.30 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.10 0.61 7.09 -2.39 -0.02 0.59 16 43 H 0.10 1.01 7.91 -2.38 -0.02 0.99 16 Total: -1.00 -82.48 377.68 1.95 -80.53 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.23 Total: 11.42 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.03 Total: 6.72 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.21 Total: -124.85 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.05 Total: -20.38 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -0.08 Total: -0.72 kcal Total: -82.48 1.95 -80.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962598628.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.473 kcal (2) G-P(sol) polarization free energy of solvation -82.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds