Wall clock time and date at job start Tue Mar 31 2020 21:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38074 * 126.28093 * 2 1 4 4 C 1.47384 * 126.42138 * 359.96775 * 3 2 1 5 5 O 1.21608 * 120.00124 * 89.99472 * 4 3 2 6 6 N 1.34777 * 120.00340 * 270.00108 * 4 3 2 7 7 C 1.46497 * 120.00494 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.47237 * 179.97438 * 7 6 4 9 9 H 1.09002 * 115.49256 * 29.61799 * 8 7 6 10 10 C 1.53001 * 117.44560 * 244.23910 * 8 7 6 11 11 H 1.09000 * 119.53514 * 4.11720 * 10 8 7 12 12 C 1.54377 * 118.12325 * 160.80921 * 10 8 7 13 13 N 1.48153 * 104.62009 * 87.19249 * 12 10 8 14 14 C 1.36933 * 127.83872 * 140.43195 * 13 12 10 15 15 H 1.07999 * 119.99914 * 195.56279 * 14 13 12 16 16 C 1.38816 * 120.00141 * 15.56595 * 14 13 12 17 17 N 1.31618 * 119.99779 * 9.09854 * 16 14 13 18 18 Si 1.86802 * 119.99826 * 189.09368 * 16 14 13 19 19 H 1.48499 * 109.47196 * 60.00297 * 18 16 14 20 20 H 1.48503 * 109.46910 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47232 * 300.00091 * 18 16 14 22 22 C 1.48149 * 104.32111 * 320.41167 * 13 12 10 23 23 C 1.52995 * 117.44526 * 174.99588 * 8 7 6 24 24 H 1.09002 * 119.53917 * 355.88298 * 23 8 7 25 25 C 1.41385 * 107.15622 * 180.22791 * 3 2 1 26 26 Cl 1.73596 * 126.00568 * 179.73861 * 25 3 2 27 27 N 1.30528 * 107.98924 * 359.61645 * 25 3 2 28 28 N 1.34231 * 126.28495 * 180.02562 * 2 1 3 29 29 C 1.46501 * 125.73523 * 359.96442 * 28 2 1 30 30 H 1.09000 * 109.46952 * 89.99867 * 1 2 3 31 31 H 1.08999 * 109.46840 * 209.99646 * 1 2 3 32 32 H 1.08992 * 109.47245 * 329.99571 * 1 2 3 33 33 H 0.97010 * 119.99377 * 359.97438 * 6 4 3 34 34 H 1.08993 * 109.47162 * 59.99220 * 7 6 4 35 35 H 1.09005 * 109.46658 * 299.99257 * 7 6 4 36 36 H 1.09001 * 110.40651 * 205.97218 * 12 10 8 37 37 H 1.08998 * 110.40974 * 328.28875 * 12 10 8 38 38 H 0.96998 * 119.99427 * 179.97438 * 17 16 14 39 39 H 1.08997 * 110.40383 * 280.80108 * 22 13 12 40 40 H 1.08996 * 110.40548 * 158.36940 * 22 13 12 41 41 H 1.08992 * 109.47425 * 90.00000 * 29 28 2 42 42 H 1.09002 * 109.46804 * 209.99940 * 29 28 2 43 43 H 1.08997 * 109.47122 * 329.99805 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1130 0.0000 4 6 1.8858 2.5202 -0.0007 5 8 1.7045 3.1011 1.0522 6 7 1.6860 3.1633 -1.1681 7 6 1.2509 4.5622 -1.1688 8 6 1.1004 5.0488 -2.6116 9 1 0.8296 4.2834 -3.3389 10 6 2.0334 6.1675 -3.0794 11 1 2.8109 6.5342 -2.4093 12 6 2.2260 6.3670 -4.5981 13 7 1.1251 7.2738 -4.9988 14 6 1.1739 8.3106 -5.8919 15 1 0.3822 9.0450 -5.9105 16 6 2.2408 8.4177 -6.7735 17 7 3.1101 7.4350 -6.8770 18 14 2.4424 9.9566 -7.8131 19 1 2.5907 11.1378 -6.9253 20 1 3.6508 9.8230 -8.6659 21 1 1.2459 10.1322 -8.6749 22 6 -0.0405 6.8041 -4.2142 23 6 0.5389 6.4557 -2.8263 24 1 0.2032 7.0372 -1.9676 25 6 3.6599 0.6498 -0.0054 26 17 5.0841 1.6423 -0.0140 27 7 3.6340 -0.6552 -0.0001 28 7 2.3014 -1.0820 -0.0005 29 6 1.8492 -2.4755 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.8309 2.7000 -2.0080 34 1 1.9926 5.1736 -0.6550 35 1 0.2930 4.6449 -0.6553 36 1 3.1921 6.8292 -4.8012 37 1 2.1444 5.4136 -5.1200 38 1 3.8554 7.5097 -7.4933 39 1 -0.4780 5.9193 -4.6765 40 1 -0.7844 7.5961 -4.1277 41 1 1.7365 -2.8210 -1.0279 42 1 2.5839 -3.0958 0.5131 43 1 0.8908 -2.5464 0.5140 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979009485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:22 Heat of formation + Delta-G solvation = 72.414680 kcal Electronic energy + Delta-G solvation = -26138.233096 eV Core-core repulsion = 22247.058179 eV Total energy + Delta-G solvation = -3891.174917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.64569 -40.72748 -39.94206 -37.97922 -36.29699 -34.96232 -34.51818 -33.31523 -32.59588 -29.50002 -28.85750 -28.22990 -27.71085 -26.44961 -23.64329 -22.73209 -21.91847 -21.55853 -20.86470 -20.60579 -18.85870 -18.67488 -17.46060 -17.27325 -16.80700 -16.67220 -16.14443 -16.12598 -15.84615 -15.31377 -15.05191 -14.60480 -14.57765 -14.35305 -14.23505 -14.01515 -13.89270 -13.62793 -13.31667 -13.18246 -13.16250 -12.87860 -12.69083 -12.68138 -12.59889 -12.34921 -11.96574 -11.93284 -11.89841 -11.73142 -11.23396 -10.90940 -10.64611 -10.54924 -10.35626 -10.03878 -9.77946 -8.88958 -7.90507 -5.26438 0.28973 0.46287 1.00364 1.45656 1.46458 1.49864 1.56200 1.63215 2.22839 2.49316 2.79295 3.27863 3.39225 3.60325 3.63996 3.73034 3.87934 3.92823 4.02725 4.24661 4.31549 4.35467 4.39755 4.46972 4.57850 4.63287 4.68811 4.70981 4.75506 4.76994 4.83782 4.96108 5.02196 5.05449 5.22616 5.38721 5.45508 5.47256 5.55939 5.68583 5.75576 6.18906 6.19654 6.50058 7.02467 7.16890 7.70166 8.48481 9.22978 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.017862 B = 0.002277 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.193296 B =12292.038505 C =12795.715095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.155 3.845 3 C -0.305 4.305 4 C 0.605 3.395 5 O -0.571 6.571 6 N -0.703 5.703 7 C 0.163 3.837 8 C -0.107 4.107 9 H 0.111 0.889 10 C -0.183 4.183 11 H 0.107 0.893 12 C 0.189 3.811 13 N -0.621 5.621 14 C -0.241 4.241 15 H 0.081 0.919 16 C -0.064 4.064 17 N -0.947 5.947 18 Si 0.979 3.021 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.273 1.273 22 C 0.149 3.851 23 C -0.154 4.154 24 H 0.128 0.872 25 C 0.142 3.858 26 Cl 0.010 6.990 27 N -0.306 5.306 28 N -0.341 5.341 29 C 0.082 3.918 30 H 0.113 0.887 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.412 0.588 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.003 0.997 38 H 0.249 0.751 39 H 0.028 0.972 40 H 0.058 0.942 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.879 -22.189 15.664 28.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.022 3.978 3 C -0.320 4.320 4 C 0.391 3.609 5 O -0.450 6.450 6 N -0.354 5.354 7 C 0.040 3.960 8 C -0.126 4.126 9 H 0.129 0.871 10 C -0.203 4.203 11 H 0.125 0.875 12 C 0.064 3.936 13 N -0.345 5.345 14 C -0.369 4.369 15 H 0.099 0.901 16 C -0.258 4.258 17 N -0.595 5.595 18 Si 0.807 3.193 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.199 1.199 22 C 0.024 3.976 23 C -0.174 4.174 24 H 0.146 0.854 25 C -0.049 4.049 26 Cl 0.037 6.963 27 N -0.131 5.131 28 N -0.122 5.122 29 C -0.056 4.056 30 H 0.131 0.869 31 H 0.132 0.868 32 H 0.102 0.898 33 H 0.248 0.752 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.097 -22.771 16.185 28.595 hybrid contribution 0.717 1.526 -1.207 2.073 sum -5.380 -21.246 14.978 26.546 Atomic orbital electron populations 1.20831 0.82755 1.06071 1.06011 1.21903 0.96358 0.84626 0.94913 1.19748 0.91503 0.94343 1.26450 1.17209 0.75773 0.84686 0.83273 1.90769 1.52836 1.68715 1.32721 1.45930 1.67761 1.13027 1.08648 1.20769 1.00558 0.80906 0.93811 1.22412 1.01930 0.91792 0.96480 0.87143 1.24047 0.94232 1.04370 0.97669 0.87467 1.20778 0.92921 0.91469 0.88468 1.45529 1.06291 1.35003 1.47699 1.19350 1.07185 1.00906 1.09508 0.90137 1.25738 0.98925 1.01055 1.00032 1.70090 1.16622 1.32555 1.40254 0.85150 0.77024 0.78965 0.78175 1.20417 1.22063 1.19912 1.21299 0.90025 0.97047 0.89256 1.23786 0.96649 0.97919 0.99022 0.85384 1.22633 0.88778 0.90896 1.02630 1.98419 1.35965 1.65046 1.96821 1.77111 0.98942 1.10250 1.26779 1.48500 1.01633 1.08248 1.53814 1.22572 1.03000 0.73986 1.06057 0.86870 0.86780 0.89796 0.75173 0.92035 0.89574 0.93254 0.97943 0.94199 0.95382 0.92314 0.88000 0.88172 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.71 9.93 71.24 0.71 0.00 16 2 C 0.16 2.48 7.01 42.15 0.30 2.77 16 3 C -0.30 -7.14 5.88 -20.13 -0.12 -7.26 16 4 C 0.61 15.97 7.17 86.65 0.62 16.59 16 5 O -0.57 -19.19 17.11 -4.06 -0.07 -19.26 16 6 N -0.70 -16.12 5.55 -466.42 -2.59 -18.71 16 7 C 0.16 3.97 5.95 86.38 0.51 4.49 16 8 C -0.11 -2.98 5.39 -10.80 -0.06 -3.04 16 9 H 0.11 2.99 8.04 -2.39 -0.02 2.97 16 10 C -0.18 -6.77 6.74 -9.89 -0.07 -6.83 16 11 H 0.11 3.86 8.12 -2.39 -0.02 3.84 16 12 C 0.19 9.27 5.70 86.53 0.49 9.76 16 13 N -0.62 -32.00 3.38 -688.16 -2.33 -34.33 16 14 C -0.24 -13.53 10.35 84.04 0.87 -12.66 16 15 H 0.08 4.31 7.84 -2.91 -0.02 4.29 16 16 C -0.06 -3.65 5.40 84.86 0.46 -3.19 16 17 N -0.95 -57.28 10.86 21.65 0.24 -57.05 16 18 Si 0.98 45.70 29.56 68.60 2.03 47.72 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 22 C 0.15 5.96 7.04 86.53 0.61 6.57 16 23 C -0.15 -5.00 6.85 -9.89 -0.07 -5.07 16 24 H 0.13 3.63 8.14 -2.39 -0.02 3.61 16 25 C 0.14 3.63 7.89 85.66 0.68 4.30 16 26 Cl 0.01 0.25 29.19 -2.72 -0.08 0.17 16 27 N -0.31 -7.14 12.50 -48.96 -0.61 -7.75 16 28 N -0.34 -5.22 3.98 -354.31 -1.41 -6.63 16 29 C 0.08 0.33 11.24 127.77 1.44 1.76 16 30 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.11 0.08 7.05 -2.39 -0.02 0.06 16 32 H 0.08 0.86 7.96 -2.39 -0.02 0.84 16 33 H 0.41 8.17 8.39 -92.70 -0.78 7.39 16 34 H 0.06 1.67 7.94 -2.39 -0.02 1.65 16 35 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.05 2.78 6.51 -2.39 -0.02 2.76 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.13 -0.33 7.01 -2.39 -0.02 -0.35 16 Total: -1.00 -78.78 378.31 1.82 -76.96 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.27 Total: 10.66 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.37 Total: 8.19 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -6.70 Total: -124.46 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.07 Total: -19.26 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.72 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -0.08 Total: 0.17 kcal Total: -78.78 1.82 -76.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979009485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.380 kcal (2) G-P(sol) polarization free energy of solvation -78.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds