Wall clock time and date at job start Tue Mar 31 2020 21:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99803 * 2 1 4 4 H 1.48499 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47261 * 300.00363 * 3 2 1 6 6 H 1.48507 * 109.46801 * 60.00201 * 3 2 1 7 7 C 1.38810 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.48661 * 125.78271 * 359.97438 * 9 7 2 11 11 C 1.53061 * 103.44534 * 155.61933 * 10 9 7 12 12 H 1.08999 * 110.55392 * 284.33717 * 11 10 9 13 13 C 1.51616 * 116.67630 * 155.88886 * 11 10 9 14 14 C 1.53821 * 107.02223 * 183.74361 * 13 11 10 15 15 C 1.52706 * 111.74762 * 57.53847 * 14 13 11 16 16 H 1.08999 * 109.16222 * 185.43705 * 15 14 13 17 17 N 1.46498 * 109.02645 * 66.49464 * 15 14 13 18 18 C 1.34775 * 119.99962 * 82.98180 * 17 15 14 19 19 O 1.21736 * 119.99982 * 359.97438 * 18 17 15 20 20 C 1.46288 * 120.00101 * 180.02562 * 18 17 15 21 21 S 1.75824 * 125.46618 * 0.02562 * 20 18 17 22 22 C 1.70594 * 91.60923 * 179.97438 * 21 20 18 23 23 C 1.33739 * 111.04069 * 0.02562 * 22 21 20 24 24 C 1.36928 * 125.46615 * 179.71523 * 20 18 17 25 25 F 1.35106 * 123.40485 * 0.02562 * 24 20 18 26 26 C 1.53848 * 111.55980 * 306.00789 * 15 14 13 27 27 C 1.51442 * 107.11354 * 57.15887 * 26 15 14 28 28 H 1.09005 * 109.86840 * 54.13930 * 27 26 15 29 29 C 1.48899 * 125.69468 * 180.43541 * 9 7 2 30 30 H 0.96999 * 120.00232 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.62686 * 37.12883 * 10 9 7 32 32 H 1.08997 * 110.62460 * 274.11210 * 10 9 7 33 33 H 1.08997 * 109.94390 * 303.11684 * 13 11 10 34 34 H 1.08997 * 109.94533 * 64.27816 * 13 11 10 35 35 H 1.08997 * 109.03043 * 178.11002 * 14 13 11 36 36 H 1.08993 * 109.03211 * 297.03873 * 14 13 11 37 37 H 0.97004 * 120.00327 * 262.97952 * 17 15 14 38 38 H 1.08001 * 124.48506 * 179.97438 * 22 21 20 39 39 H 1.07998 * 122.45552 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.94126 * 297.73385 * 26 15 14 41 41 H 1.09004 * 109.94208 * 176.58344 * 26 15 14 42 42 H 1.08998 * 110.54824 * 57.92700 * 29 9 7 43 43 H 1.08995 * 110.10964 * 295.91825 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1533 -2.5379 0.0005 11 6 -0.3712 -3.9225 -0.6144 12 1 -0.2176 -3.8907 -1.6931 13 6 -1.6675 -4.6266 -0.2642 14 6 -1.6133 -6.0195 -0.9145 15 6 -0.3970 -6.8154 -0.4465 16 1 -0.3465 -7.7516 -1.0024 17 7 -0.5427 -7.1158 0.9799 18 6 -1.2797 -8.1732 1.3741 19 8 -1.8246 -8.8783 0.5447 20 6 -1.4257 -8.4728 2.7985 21 16 -0.7064 -7.5535 4.1133 22 6 -1.3934 -8.5920 5.2794 23 6 -2.1113 -9.5589 4.6977 24 6 -2.1494 -9.5107 3.3219 25 9 -2.8286 -10.4002 2.5650 26 6 0.9091 -6.0318 -0.6636 27 6 0.7705 -4.7199 0.0802 28 1 0.5099 -4.9101 1.1214 29 6 1.9386 -3.7450 0.0081 30 1 -0.4850 0.8400 0.0004 31 1 -0.6179 -1.7672 -0.6145 32 1 -0.5419 -2.5043 1.0183 33 1 -1.7569 -4.7246 0.8176 34 1 -2.5142 -4.0640 -0.6575 35 1 -2.5183 -6.5685 -0.6546 36 1 -1.5660 -5.9047 -1.9973 37 1 -0.1088 -6.5537 1.6408 38 1 -1.2650 -8.4837 6.3462 39 1 -2.6278 -10.3187 5.2655 40 1 1.0567 -5.8426 -1.7268 41 1 1.7522 -6.5971 -0.2663 42 1 2.5847 -3.8675 0.8774 43 1 2.5063 -3.9056 -0.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000979661635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:00 Heat of formation + Delta-G solvation = -21.131969 kcal Electronic energy + Delta-G solvation = -27296.735865 eV Core-core repulsion = 23383.628205 eV Total energy + Delta-G solvation = -3913.107660 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -49.06974 -40.40159 -38.82221 -37.54926 -35.60597 -33.31466 -31.92093 -31.00610 -29.92796 -28.74406 -26.34824 -25.37403 -24.91746 -22.34478 -21.97669 -20.64967 -20.00521 -19.81130 -19.29040 -18.74993 -17.23755 -16.73946 -16.21031 -16.11588 -15.60791 -15.12010 -14.93344 -14.83424 -14.37598 -14.18165 -14.11501 -13.79508 -13.58223 -13.26571 -12.80609 -12.71683 -12.42864 -12.20572 -12.09288 -11.94376 -11.50197 -11.49113 -11.19741 -11.02674 -10.85010 -10.76250 -10.64033 -10.14202 -10.04116 -9.93927 -9.84466 -9.55962 -9.38868 -9.25315 -8.94931 -8.84770 -8.66037 -6.83149 -5.64383 -3.05215 0.01761 0.95115 1.36818 1.81846 2.96610 3.01716 3.39422 3.44985 3.47423 3.93144 4.47425 4.50001 4.57053 4.82257 4.87501 4.90125 5.03023 5.27286 5.31366 5.33314 5.42871 5.51887 5.63505 5.65807 5.72302 5.82484 5.91173 5.99556 6.13299 6.16283 6.23213 6.23728 6.37081 6.47236 6.58289 6.63359 6.64866 6.84111 7.00513 7.35713 7.54079 7.61585 7.86437 8.05065 8.33663 9.20813 9.81708 10.48512 11.39978 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002857 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.333356 B = 9798.344840 C =10568.278982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.013 4.013 3 Si 0.912 3.088 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.219 4.219 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.164 3.836 11 C -0.114 4.114 12 H 0.071 0.929 13 C -0.099 4.099 14 C -0.128 4.128 15 C 0.153 3.847 16 H 0.086 0.914 17 N -0.714 5.714 18 C 0.591 3.409 19 O -0.525 6.525 20 C -0.317 4.317 21 S 0.265 5.735 22 C -0.210 4.210 23 C -0.180 4.180 24 C 0.160 3.840 25 F -0.104 7.104 26 C -0.111 4.111 27 C -0.108 4.108 28 H 0.061 0.939 29 C 0.142 3.858 30 H 0.250 0.750 31 H 0.104 0.896 32 H 0.011 0.989 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.398 0.602 38 H 0.181 0.819 39 H 0.158 0.842 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.024 0.976 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.844 -18.273 8.611 20.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.208 4.208 3 Si 0.743 3.257 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.040 3.960 11 C -0.134 4.134 12 H 0.089 0.911 13 C -0.137 4.137 14 C -0.166 4.166 15 C 0.049 3.951 16 H 0.104 0.896 17 N -0.367 5.367 18 C 0.376 3.624 19 O -0.403 6.403 20 C -0.438 4.438 21 S 0.531 5.469 22 C -0.349 4.349 23 C -0.212 4.212 24 C 0.126 3.874 25 F -0.083 7.083 26 C -0.149 4.149 27 C -0.127 4.127 28 H 0.079 0.921 29 C 0.017 3.983 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.029 0.971 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.234 0.766 38 H 0.198 0.802 39 H 0.176 0.824 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.042 0.958 43 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.341 -17.281 8.046 19.205 hybrid contribution -0.417 -0.369 0.483 0.737 sum -2.759 -17.650 8.529 19.796 Atomic orbital electron populations 1.69824 1.04828 1.24544 1.57887 1.24766 0.95718 0.97594 1.02749 0.86029 0.78638 0.83798 0.77219 1.20601 1.21812 1.21836 1.19134 0.90489 0.82550 1.42605 0.90550 1.45294 1.01632 0.99448 1.87120 1.21634 0.84365 0.92172 0.97857 1.22388 0.93067 0.97954 0.99951 0.91052 1.21251 0.98153 0.94257 1.00066 1.21961 0.97477 0.96362 1.00813 1.21161 0.95420 0.98631 0.79895 0.89608 1.46100 1.51856 1.29230 1.09491 1.16640 0.79244 0.80974 0.85508 1.90870 1.47228 1.49630 1.52570 1.24754 1.13889 1.05824 0.99357 1.83375 1.45652 1.26103 0.91780 1.25153 1.03570 1.00213 1.05928 1.19848 1.05630 1.03373 0.92346 1.16895 0.93605 0.88346 0.88588 1.91580 1.76440 1.64909 1.75337 1.21623 0.95395 0.95918 1.01949 1.21785 0.98416 0.93954 0.98544 0.92060 1.21090 0.93426 0.85938 0.97853 0.93879 0.87805 0.97095 0.92403 0.91775 0.91868 0.91093 0.76611 0.80192 0.82448 0.89887 0.91516 0.95754 0.95727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.55 10.11 55.49 0.56 -25.99 16 2 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 3 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.22 -6.02 10.30 -15.06 -0.16 -6.18 16 8 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.61 -15.15 3.46 -169.87 -0.59 -15.73 16 10 C 0.16 3.83 5.53 -2.82 -0.02 3.82 16 11 C -0.11 -2.03 2.49 -89.90 -0.22 -2.26 16 12 H 0.07 1.32 8.03 -51.93 -0.42 0.90 16 13 C -0.10 -1.51 5.57 -27.00 -0.15 -1.66 16 14 C -0.13 -1.73 5.42 -26.45 -0.14 -1.87 16 15 C 0.15 1.96 2.69 -67.64 -0.18 1.78 16 16 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 17 N -0.71 -8.95 4.66 -54.95 -0.26 -9.21 16 18 C 0.59 8.32 7.64 -13.03 -0.10 8.22 16 19 O -0.52 -9.14 15.69 5.16 0.08 -9.06 16 20 C -0.32 -3.73 6.45 -36.82 -0.24 -3.97 16 21 S 0.26 2.15 22.14 -107.50 -2.38 -0.23 16 22 C -0.21 -1.39 10.91 29.15 0.32 -1.07 16 23 C -0.18 -1.46 10.15 -41.35 -0.42 -1.88 16 24 C 0.16 1.86 7.48 -40.25 -0.30 1.56 16 25 F -0.10 -1.43 16.43 2.25 0.04 -1.40 16 26 C -0.11 -1.41 5.36 -27.08 -0.15 -1.56 16 27 C -0.11 -1.72 2.22 -90.36 -0.20 -1.92 16 28 H 0.06 0.94 6.10 -51.93 -0.32 0.63 16 29 C 0.14 2.81 7.04 -3.06 -0.02 2.79 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.10 2.78 5.93 -51.93 -0.31 2.48 16 32 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.88 7.84 -51.93 -0.41 0.47 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.91 7.96 -51.93 -0.41 0.50 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.40 4.53 5.92 -40.82 -0.24 4.29 16 38 H 0.18 0.63 8.06 -52.49 -0.42 0.21 16 39 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.08 1.05 8.04 -51.93 -0.42 0.63 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 LS Contribution 356.58 15.07 5.37 5.37 Total: -1.00 -32.35 356.58 -10.11 -42.46 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.84 Total: 1.59 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: -2.07 Total: -4.65 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.28 Total: -50.93 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.08 Total: -9.06 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 2.15 SS G_CDS: -2.38 Total: -0.23 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.35 -10.11 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979661635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.333 kcal (2) G-P(sol) polarization free energy of solvation -32.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds