Wall clock time and date at job start Tue Mar 31 2020 21:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86808 * 119.99803 * 2 1 4 4 H 1.48499 * 109.47136 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47261 * 300.00363 * 3 2 1 6 6 H 1.48507 * 109.46801 * 60.00201 * 3 2 1 7 7 C 1.38810 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99620 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00207 * 359.97438 * 7 2 1 10 10 C 1.48661 * 125.78271 * 359.97438 * 9 7 2 11 11 C 1.53061 * 103.44534 * 155.61933 * 10 9 7 12 12 H 1.08999 * 110.55392 * 284.33717 * 11 10 9 13 13 C 1.51616 * 116.67630 * 155.88886 * 11 10 9 14 14 C 1.53821 * 107.02223 * 183.74361 * 13 11 10 15 15 C 1.52706 * 111.74762 * 57.53847 * 14 13 11 16 16 H 1.08999 * 109.16222 * 185.43705 * 15 14 13 17 17 N 1.46498 * 109.02645 * 66.49464 * 15 14 13 18 18 C 1.34775 * 119.99962 * 82.98180 * 17 15 14 19 19 O 1.21736 * 119.99982 * 359.97438 * 18 17 15 20 20 C 1.46288 * 120.00101 * 180.02562 * 18 17 15 21 21 S 1.75824 * 125.46618 * 0.02562 * 20 18 17 22 22 C 1.70594 * 91.60923 * 179.97438 * 21 20 18 23 23 C 1.33739 * 111.04069 * 0.02562 * 22 21 20 24 24 C 1.36928 * 125.46615 * 179.71523 * 20 18 17 25 25 F 1.35106 * 123.40485 * 0.02562 * 24 20 18 26 26 C 1.53848 * 111.55980 * 306.00789 * 15 14 13 27 27 C 1.51442 * 107.11354 * 57.15887 * 26 15 14 28 28 H 1.09005 * 109.86840 * 54.13930 * 27 26 15 29 29 C 1.48899 * 125.69468 * 180.43541 * 9 7 2 30 30 H 0.96999 * 120.00232 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.62686 * 37.12883 * 10 9 7 32 32 H 1.08997 * 110.62460 * 274.11210 * 10 9 7 33 33 H 1.08997 * 109.94390 * 303.11684 * 13 11 10 34 34 H 1.08997 * 109.94533 * 64.27816 * 13 11 10 35 35 H 1.08997 * 109.03043 * 178.11002 * 14 13 11 36 36 H 1.08993 * 109.03211 * 297.03873 * 14 13 11 37 37 H 0.97004 * 120.00327 * 262.97952 * 17 15 14 38 38 H 1.08001 * 124.48506 * 179.97438 * 22 21 20 39 39 H 1.07998 * 122.45552 * 180.02562 * 23 22 21 40 40 H 1.09002 * 109.94126 * 297.73385 * 26 15 14 41 41 H 1.09004 * 109.94208 * 176.58344 * 26 15 14 42 42 H 1.08998 * 110.54824 * 57.92700 * 29 9 7 43 43 H 1.08995 * 110.10964 * 295.91825 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3966 -1.2124 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1533 -2.5379 0.0005 11 6 -0.3712 -3.9225 -0.6144 12 1 -0.2176 -3.8907 -1.6931 13 6 -1.6675 -4.6266 -0.2642 14 6 -1.6133 -6.0195 -0.9145 15 6 -0.3970 -6.8154 -0.4465 16 1 -0.3465 -7.7516 -1.0024 17 7 -0.5427 -7.1158 0.9799 18 6 -1.2797 -8.1732 1.3741 19 8 -1.8246 -8.8783 0.5447 20 6 -1.4257 -8.4728 2.7985 21 16 -0.7064 -7.5535 4.1133 22 6 -1.3934 -8.5920 5.2794 23 6 -2.1113 -9.5589 4.6977 24 6 -2.1494 -9.5107 3.3219 25 9 -2.8286 -10.4002 2.5650 26 6 0.9091 -6.0318 -0.6636 27 6 0.7705 -4.7199 0.0802 28 1 0.5099 -4.9101 1.1214 29 6 1.9386 -3.7450 0.0081 30 1 -0.4850 0.8400 0.0004 31 1 -0.6179 -1.7672 -0.6145 32 1 -0.5419 -2.5043 1.0183 33 1 -1.7569 -4.7246 0.8176 34 1 -2.5142 -4.0640 -0.6575 35 1 -2.5183 -6.5685 -0.6546 36 1 -1.5660 -5.9047 -1.9973 37 1 -0.1088 -6.5537 1.6408 38 1 -1.2650 -8.4837 6.3462 39 1 -2.6278 -10.3187 5.2655 40 1 1.0567 -5.8426 -1.7268 41 1 1.7522 -6.5971 -0.2663 42 1 2.5847 -3.8675 0.8774 43 1 2.5063 -3.9056 -0.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000979661635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:59 Heat of formation + Delta-G solvation = -40.569831 kcal Electronic energy + Delta-G solvation = -27297.578754 eV Core-core repulsion = 23383.628205 eV Total energy + Delta-G solvation = -3913.950549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -49.99003 -41.57609 -40.06400 -38.32015 -37.06465 -34.80728 -33.54211 -32.22381 -31.11149 -30.13197 -27.84365 -26.90352 -25.93079 -23.56709 -23.21684 -21.94368 -21.46907 -20.82425 -20.35356 -19.78557 -18.74100 -18.09128 -17.20537 -17.03177 -16.92067 -16.51196 -16.22050 -15.77961 -15.60925 -15.42998 -15.20505 -14.97598 -14.80278 -14.63611 -14.19527 -13.92884 -13.58917 -13.43166 -13.39277 -13.07868 -12.94058 -12.81787 -12.62120 -12.56830 -12.36293 -12.13448 -11.96998 -11.89173 -11.69696 -11.40937 -11.23935 -10.99808 -10.78972 -10.68758 -10.25565 -9.92286 -9.53226 -8.83994 -7.73191 -5.16140 -0.72756 0.25757 0.73084 1.12803 1.48241 1.48806 1.58948 1.97248 2.04355 2.51705 3.22875 3.36811 3.54704 3.61230 3.65125 3.75035 3.83947 3.92135 4.11317 4.32367 4.36848 4.43368 4.48279 4.59786 4.67547 4.71932 4.76642 4.81975 4.85636 4.94389 5.01415 5.07466 5.10461 5.17221 5.19467 5.26715 5.39095 5.47889 5.49952 5.57892 5.77113 5.87607 6.32805 6.35749 7.03575 7.13183 7.80205 8.46787 9.29030 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.018633 B = 0.002857 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.333356 B = 9798.344840 C =10568.278982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.070 4.070 3 Si 0.976 3.024 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.232 4.232 8 H 0.080 0.920 9 N -0.632 5.632 10 C 0.169 3.831 11 C -0.102 4.102 12 H 0.067 0.933 13 C -0.091 4.091 14 C -0.119 4.119 15 C 0.156 3.844 16 H 0.088 0.912 17 N -0.707 5.707 18 C 0.589 3.411 19 O -0.568 6.568 20 C -0.355 4.355 21 S 0.297 5.703 22 C -0.185 4.185 23 C -0.189 4.189 24 C 0.144 3.856 25 F -0.125 7.125 26 C -0.099 4.099 27 C -0.091 4.091 28 H 0.069 0.931 29 C 0.137 3.863 30 H 0.244 0.756 31 H 0.065 0.935 32 H -0.013 1.013 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.404 0.596 38 H 0.220 0.780 39 H 0.181 0.819 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.032 0.968 43 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 -19.387 10.193 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.098 0.902 9 N -0.359 5.359 10 C 0.044 3.956 11 C -0.122 4.122 12 H 0.085 0.915 13 C -0.129 4.129 14 C -0.158 4.158 15 C 0.052 3.948 16 H 0.106 0.894 17 N -0.359 5.359 18 C 0.377 3.623 19 O -0.449 6.449 20 C -0.476 4.476 21 S 0.563 5.437 22 C -0.323 4.323 23 C -0.220 4.220 24 C 0.108 3.892 25 F -0.104 7.104 26 C -0.137 4.137 27 C -0.110 4.110 28 H 0.088 0.912 29 C 0.013 3.987 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.005 0.995 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.242 0.758 38 H 0.237 0.763 39 H 0.198 0.802 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.050 0.950 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.058 -18.408 9.642 20.807 hybrid contribution -0.773 0.003 0.079 0.777 sum -1.831 -18.405 9.721 20.895 Atomic orbital electron populations 1.70086 1.06129 1.24673 1.59056 1.25579 0.96591 1.00781 1.03279 0.85032 0.78151 0.79708 0.76583 1.19117 1.22147 1.22079 1.19501 0.90980 0.83912 1.41723 0.90201 1.45626 1.02448 1.00795 1.87006 1.21362 0.83783 0.94354 0.96077 1.22151 0.95465 0.95209 0.99338 0.91469 1.21172 0.96561 0.94958 1.00237 1.21879 0.97676 0.94890 1.01343 1.21109 0.94971 0.98492 0.80220 0.89367 1.46033 1.51479 1.28924 1.09510 1.16960 0.78503 0.80532 0.86344 1.90836 1.49017 1.51049 1.54047 1.24710 1.16070 1.07526 0.99305 1.83265 1.44614 1.25288 0.90490 1.25653 1.00998 0.98207 1.07427 1.20024 1.06484 1.04663 0.90786 1.17466 0.93671 0.88131 0.89976 1.91517 1.77014 1.65684 1.76181 1.21563 0.96083 0.93935 1.02090 1.21679 0.95585 0.94422 0.99362 0.91226 1.21287 0.94757 0.84388 0.98283 0.94594 0.91711 0.99461 0.92390 0.92141 0.92600 0.90016 0.75849 0.76306 0.80164 0.89100 0.89257 0.94986 0.95113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.38 10.11 21.65 0.22 -56.16 16 2 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 3 Si 0.98 45.41 29.55 68.60 2.03 47.44 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 7 C -0.23 -12.82 10.30 84.03 0.87 -11.95 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -31.69 3.46 -691.35 -2.40 -34.09 16 10 C 0.17 8.10 5.53 85.98 0.48 8.58 16 11 C -0.10 -3.60 2.49 -10.32 -0.03 -3.63 16 12 H 0.07 2.45 8.03 -2.39 -0.02 2.43 16 13 C -0.09 -2.73 5.57 30.42 0.17 -2.56 16 14 C -0.12 -3.10 5.42 30.77 0.17 -2.93 16 15 C 0.16 3.73 2.69 45.18 0.12 3.85 16 16 H 0.09 2.18 7.58 -2.39 -0.02 2.16 16 17 N -0.71 -16.73 4.66 -445.97 -2.08 -18.81 16 18 C 0.59 16.34 7.64 86.34 0.66 17.00 16 19 O -0.57 -20.04 15.69 -4.46 -0.07 -20.11 16 20 C -0.35 -8.05 6.45 24.06 0.16 -7.89 16 21 S 0.30 4.08 22.14 -56.49 -1.25 2.83 16 22 C -0.18 -1.75 10.91 66.80 0.73 -1.02 16 23 C -0.19 -2.60 10.15 21.12 0.21 -2.38 16 24 C 0.14 3.22 7.48 21.84 0.16 3.38 16 25 F -0.13 -3.52 16.43 44.97 0.74 -2.78 16 26 C -0.10 -2.25 5.36 30.37 0.16 -2.09 16 27 C -0.09 -2.75 2.22 -10.63 -0.02 -2.77 16 28 H 0.07 2.00 6.10 -2.38 -0.01 1.98 16 29 C 0.14 5.23 7.04 85.69 0.60 5.83 16 30 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 31 H 0.06 3.63 5.93 -2.38 -0.01 3.62 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.06 1.73 7.84 -2.39 -0.02 1.71 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.57 7.96 -2.39 -0.02 1.55 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.40 8.41 5.92 -92.71 -0.55 7.86 16 38 H 0.22 0.33 8.06 -2.91 -0.02 0.31 16 39 H 0.18 1.56 8.06 -2.91 -0.02 1.54 16 40 H 0.09 2.01 8.04 -2.39 -0.02 1.99 16 41 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.03 1.15 8.08 -2.39 -0.02 1.13 16 Total: -1.00 -73.43 356.58 2.58 -70.85 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.49 Total: 12.90 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 4.90 Total: -2.06 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -4.26 Total: -109.06 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -0.07 Total: -20.11 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.74 Total: -2.78 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.25 Total: 2.83 kcal Total: -73.43 2.58 -70.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000979661635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.276 kcal (2) G-P(sol) polarization free energy of solvation -73.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds