Wall clock time and date at job start Tue Mar 31 2020 20:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48492 * 109.46933 * 274.98508 * 3 2 1 5 5 H 1.48497 * 109.46829 * 34.98390 * 3 2 1 6 6 H 1.48502 * 109.47207 * 154.98479 * 3 2 1 7 7 C 1.38820 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00018 * 186.81740 * 7 2 1 9 9 N 1.36935 * 119.99970 * 6.81213 * 7 2 1 10 10 C 1.47173 * 125.65019 * 353.86764 * 9 7 2 11 11 C 1.55343 * 106.96554 * 180.99881 * 10 9 7 12 12 H 1.09001 * 112.36703 * 215.23006 * 11 10 9 13 13 C 1.53000 * 106.97907 * 91.81387 * 11 10 9 14 14 C 1.51414 * 111.70037 * 197.67835 * 13 11 10 15 15 C 1.53331 * 108.64638 * 61.71725 * 14 13 11 16 16 H 1.09005 * 109.77976 * 55.88537 * 15 14 13 17 17 N 1.46500 * 109.73896 * 176.56446 * 15 14 13 18 18 C 1.34776 * 119.99817 * 273.63764 * 17 15 14 19 19 O 1.21734 * 120.00479 * 359.97438 * 18 17 15 20 20 C 1.46350 * 119.99603 * 180.02562 * 18 17 15 21 21 C 1.36740 * 125.43120 * 180.02562 * 20 18 17 22 22 C 1.37341 * 113.32616 * 179.97438 * 21 20 18 23 23 C 1.34209 * 115.04974 * 359.97438 * 22 21 20 24 24 F 1.35094 * 124.54073 * 180.02562 * 23 22 21 25 25 S 1.70620 * 110.91461 * 359.72269 * 23 22 21 26 26 C 1.52830 * 108.09320 * 296.21227 * 15 14 13 27 27 C 1.50741 * 111.74273 * 58.92207 * 26 15 14 28 28 H 1.08992 * 109.26653 * 186.23293 * 27 26 15 29 29 C 1.47814 * 125.64599 * 173.90672 * 9 7 2 30 30 H 0.96999 * 120.00254 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.96062 * 61.61627 * 10 9 7 32 32 H 1.09001 * 109.99026 * 300.38997 * 10 9 7 33 33 H 1.08998 * 109.16396 * 317.32500 * 13 11 10 34 34 H 1.09000 * 109.16169 * 76.51225 * 13 11 10 35 35 H 1.08990 * 109.28063 * 302.07911 * 14 13 11 36 36 H 1.09003 * 109.83542 * 181.68018 * 14 13 11 37 37 H 0.96996 * 119.99777 * 93.64070 * 17 15 14 38 38 H 1.07997 * 123.33364 * 359.97438 * 21 20 18 39 39 H 1.08001 * 122.47202 * 179.97438 * 22 21 20 40 40 H 1.08995 * 109.02574 * 179.50498 * 26 15 14 41 41 H 1.08997 * 109.02351 * 298.41746 * 26 15 14 42 42 H 1.09000 * 110.51049 * 84.67611 * 29 9 7 43 43 H 1.08995 * 110.51530 * 321.95552 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6199 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0845 -1.2055 0.1116 9 7 1.3328 -2.3840 -0.1396 10 6 -0.1308 -2.5352 -0.1713 11 6 -0.4266 -4.0530 -0.3195 12 1 -1.3070 -4.2461 -0.9324 13 6 -0.5744 -4.6194 1.0941 14 6 -0.4368 -6.1272 1.1102 15 6 0.9656 -6.4969 0.6126 16 1 1.7173 -5.9928 1.2201 17 7 1.1538 -7.9474 0.6957 18 6 1.5863 -8.5060 1.8434 19 8 1.8212 -7.8054 2.8108 20 6 1.7748 -9.9550 1.9262 21 6 2.2065 -10.6364 3.0304 22 6 2.2937 -11.9927 2.8327 23 6 1.9445 -12.4119 1.6065 24 9 1.9581 -13.7018 1.2053 25 16 1.4733 -11.0982 0.6250 26 6 1.0882 -6.0431 -0.8416 27 6 0.8674 -4.5587 -0.9839 28 1 0.8534 -4.2970 -2.0418 29 6 1.9505 -3.7192 -0.2833 30 1 -0.4850 0.8400 0.0004 31 1 -0.5428 -1.9910 -1.0211 32 1 -0.5643 -2.1603 0.7559 33 1 0.2039 -4.1993 1.7311 34 1 -1.5502 -4.3399 1.4914 35 1 -1.1870 -6.5641 0.4513 36 1 -0.5764 -6.5005 2.1247 37 1 0.9670 -8.5056 -0.0752 38 1 2.4543 -10.1556 3.9651 39 1 2.6192 -12.6717 3.6069 40 1 2.0841 -6.2910 -1.2085 41 1 0.3470 -6.5706 -1.4421 42 1 2.1854 -4.1385 0.6950 43 1 2.8470 -3.6609 -0.9003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980244822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:30 Heat of formation + Delta-G solvation = -25.648148 kcal Electronic energy + Delta-G solvation = -26678.242642 eV Core-core repulsion = 22764.939146 eV Total energy + Delta-G solvation = -3913.303496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -49.57490 -40.35034 -39.10469 -37.75619 -35.58811 -33.51832 -31.72768 -31.04430 -29.85280 -28.74997 -26.22919 -25.41082 -24.63903 -22.47988 -22.14924 -21.15774 -20.26288 -19.90111 -19.47777 -18.11625 -17.22266 -16.87342 -16.60649 -16.47573 -16.07972 -15.23945 -14.97384 -14.81268 -14.71175 -14.17187 -13.87007 -13.75287 -13.63026 -13.42596 -12.83217 -12.55846 -12.52198 -12.41642 -12.07571 -11.72164 -11.59099 -11.54520 -11.12905 -10.99909 -10.95798 -10.66785 -10.53005 -10.29440 -9.96270 -9.89823 -9.66351 -9.52899 -9.45089 -9.28983 -9.22866 -8.99074 -8.53283 -6.76161 -5.68061 -2.99590 -0.13202 0.48455 1.11126 1.78110 2.90084 2.93337 3.42894 3.48254 3.50143 3.80352 4.45230 4.53908 4.77062 4.81134 4.85448 4.90994 5.26814 5.32192 5.38681 5.42541 5.51494 5.54235 5.60350 5.70117 5.72356 5.79441 5.83886 5.93053 6.06411 6.16603 6.23748 6.35232 6.43121 6.45124 6.55818 6.65773 6.82052 6.93906 7.03756 7.27072 7.61377 7.67572 7.87471 7.96264 8.30167 9.26663 9.87049 10.54580 11.44067 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.002213 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.871517 B =12651.997372 C =12852.162144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.183 3.817 11 C -0.111 4.111 12 H 0.072 0.928 13 C -0.105 4.105 14 C -0.123 4.123 15 C 0.144 3.856 16 H 0.099 0.901 17 N -0.719 5.719 18 C 0.590 3.410 19 O -0.518 6.518 20 C -0.255 4.255 21 C -0.038 4.038 22 C -0.180 4.180 23 C -0.024 4.024 24 F -0.099 7.099 25 S 0.222 5.778 26 C -0.108 4.108 27 C -0.093 4.093 28 H 0.072 0.928 29 C 0.138 3.862 30 H 0.251 0.749 31 H 0.042 0.958 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.393 0.607 38 H 0.166 0.834 39 H 0.159 0.841 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -26.127 0.332 26.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.739 3.261 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.058 3.942 11 C -0.131 4.131 12 H 0.091 0.909 13 C -0.143 4.143 14 C -0.162 4.162 15 C 0.041 3.959 16 H 0.117 0.883 17 N -0.369 5.369 18 C 0.374 3.626 19 O -0.395 6.395 20 C -0.376 4.376 21 C -0.070 4.070 22 C -0.213 4.213 23 C -0.162 4.162 24 F -0.078 7.078 25 S 0.487 5.513 26 C -0.146 4.146 27 C -0.113 4.113 28 H 0.091 0.909 29 C 0.012 3.988 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.227 0.773 38 H 0.183 0.817 39 H 0.176 0.824 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.038 0.962 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.006 -25.291 -0.469 25.296 hybrid contribution 0.851 0.002 1.003 1.315 sum 0.845 -25.289 0.534 25.309 Atomic orbital electron populations 1.69966 1.04876 1.24929 1.57061 1.24810 0.95687 0.97585 1.02380 0.86138 0.78726 0.83773 0.77427 1.21715 1.21830 1.20672 1.19068 0.91079 0.82614 1.42676 0.90535 1.44562 1.01615 1.00970 1.86084 1.21448 0.84377 0.87561 1.00773 1.22443 0.96199 0.99484 0.94938 0.90925 1.21223 1.02216 0.93135 0.97726 1.21688 0.95723 0.97789 1.00981 1.21205 0.98738 0.77807 0.98153 0.88271 1.46025 1.67825 1.09519 1.13501 1.16763 0.77387 0.84799 0.83605 1.90898 1.50728 1.61824 1.36073 1.24649 1.16328 0.97658 0.98939 1.20532 0.95565 0.91755 0.99114 1.20324 1.06895 0.97049 0.97006 1.21946 1.11161 0.84323 0.98739 1.91543 1.94451 1.31614 1.90209 1.83389 1.61572 0.93496 1.12886 1.21154 1.01832 0.97131 0.94499 1.21366 0.97339 0.91987 1.00616 0.90914 1.21509 0.94187 0.86671 0.96387 0.93834 0.94023 0.93709 0.91301 0.92117 0.92234 0.91965 0.77270 0.81675 0.82351 0.91654 0.91867 0.96212 0.94528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.20 10.37 55.49 0.58 -26.62 16 2 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 3 Si 0.91 22.34 29.56 -169.99 -5.02 17.31 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.23 -6.35 10.27 -15.06 -0.15 -6.51 16 8 H 0.08 2.09 7.84 -52.49 -0.41 1.68 16 9 N -0.61 -15.40 3.41 -169.61 -0.58 -15.98 16 10 C 0.18 4.37 4.70 -2.43 -0.01 4.36 16 11 C -0.11 -1.98 3.59 -88.85 -0.32 -2.30 16 12 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 13 C -0.10 -1.73 4.59 -27.53 -0.13 -1.86 16 14 C -0.12 -1.68 5.49 -27.36 -0.15 -1.83 16 15 C 0.14 1.90 2.31 -67.85 -0.16 1.74 16 16 H 0.10 1.60 6.23 -51.93 -0.32 1.27 16 17 N -0.72 -7.77 5.09 -55.13 -0.28 -8.05 16 18 C 0.59 7.29 7.76 -13.00 -0.10 7.18 16 19 O -0.52 -8.44 16.50 5.16 0.09 -8.36 16 20 C -0.25 -2.43 6.44 -36.86 -0.24 -2.67 16 21 C -0.04 -0.32 10.00 -40.45 -0.40 -0.73 16 22 C -0.18 -1.31 10.16 -41.33 -0.42 -1.73 16 23 C -0.02 -0.19 8.10 29.31 0.24 0.05 16 24 F -0.10 -0.83 17.32 2.25 0.04 -0.79 16 25 S 0.22 1.56 22.15 -107.50 -2.38 -0.82 16 26 C -0.11 -1.34 4.86 -27.95 -0.14 -1.47 16 27 C -0.09 -1.54 2.81 -90.75 -0.26 -1.79 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 C 0.14 2.82 6.21 -2.85 -0.02 2.81 16 30 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.04 1.11 7.37 -51.93 -0.38 0.73 16 32 H 0.04 1.19 7.18 -51.93 -0.37 0.82 16 33 H 0.07 1.33 7.21 -51.93 -0.37 0.95 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.39 3.14 7.72 -40.82 -0.31 2.83 16 38 H 0.17 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.16 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.02 0.41 6.17 -51.93 -0.32 0.09 16 43 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 357.74 15.07 5.39 5.39 Total: -1.00 -32.21 357.74 -10.38 -42.59 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -5.86 Total: 0.42 kcal Atomic # 6 Polarization: -2.74 SS G_CDS: -2.35 Total: -5.08 kcal Atomic # 7 Polarization: -50.37 SS G_CDS: -0.28 Total: -50.66 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.36 kcal Atomic # 9 Polarization: -0.83 SS G_CDS: 0.04 Total: -0.79 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 1.56 SS G_CDS: -2.38 Total: -0.82 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.21 -10.38 -42.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980244822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.942 kcal (2) G-P(sol) polarization free energy of solvation -32.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds