Wall clock time and date at job start Tue Mar 31 2020 20:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00208 * 2 1 4 4 H 1.48492 * 109.46933 * 274.98508 * 3 2 1 5 5 H 1.48497 * 109.46829 * 34.98390 * 3 2 1 6 6 H 1.48502 * 109.47207 * 154.98479 * 3 2 1 7 7 C 1.38820 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00018 * 186.81740 * 7 2 1 9 9 N 1.36935 * 119.99970 * 6.81213 * 7 2 1 10 10 C 1.47173 * 125.65019 * 353.86764 * 9 7 2 11 11 C 1.55343 * 106.96554 * 180.99881 * 10 9 7 12 12 H 1.09001 * 112.36703 * 215.23006 * 11 10 9 13 13 C 1.53000 * 106.97907 * 91.81387 * 11 10 9 14 14 C 1.51414 * 111.70037 * 197.67835 * 13 11 10 15 15 C 1.53331 * 108.64638 * 61.71725 * 14 13 11 16 16 H 1.09005 * 109.77976 * 55.88537 * 15 14 13 17 17 N 1.46500 * 109.73896 * 176.56446 * 15 14 13 18 18 C 1.34776 * 119.99817 * 273.63764 * 17 15 14 19 19 O 1.21734 * 120.00479 * 359.97438 * 18 17 15 20 20 C 1.46350 * 119.99603 * 180.02562 * 18 17 15 21 21 C 1.36740 * 125.43120 * 180.02562 * 20 18 17 22 22 C 1.37341 * 113.32616 * 179.97438 * 21 20 18 23 23 C 1.34209 * 115.04974 * 359.97438 * 22 21 20 24 24 F 1.35094 * 124.54073 * 180.02562 * 23 22 21 25 25 S 1.70620 * 110.91461 * 359.72269 * 23 22 21 26 26 C 1.52830 * 108.09320 * 296.21227 * 15 14 13 27 27 C 1.50741 * 111.74273 * 58.92207 * 26 15 14 28 28 H 1.08992 * 109.26653 * 186.23293 * 27 26 15 29 29 C 1.47814 * 125.64599 * 173.90672 * 9 7 2 30 30 H 0.96999 * 120.00254 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.96062 * 61.61627 * 10 9 7 32 32 H 1.09001 * 109.99026 * 300.38997 * 10 9 7 33 33 H 1.08998 * 109.16396 * 317.32500 * 13 11 10 34 34 H 1.09000 * 109.16169 * 76.51225 * 13 11 10 35 35 H 1.08990 * 109.28063 * 302.07911 * 14 13 11 36 36 H 1.09003 * 109.83542 * 181.68018 * 14 13 11 37 37 H 0.96996 * 119.99777 * 93.64070 * 17 15 14 38 38 H 1.07997 * 123.33364 * 359.97438 * 21 20 18 39 39 H 1.08001 * 122.47202 * 179.97438 * 22 21 20 40 40 H 1.08995 * 109.02574 * 179.50498 * 26 15 14 41 41 H 1.08997 * 109.02351 * 298.41746 * 26 15 14 42 42 H 1.09000 * 110.51049 * 84.67611 * 29 9 7 43 43 H 1.08995 * 110.51530 * 321.95552 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3923 2.1072 -1.3947 5 1 1.5043 2.6199 0.8027 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0845 -1.2055 0.1116 9 7 1.3328 -2.3840 -0.1396 10 6 -0.1308 -2.5352 -0.1713 11 6 -0.4266 -4.0530 -0.3195 12 1 -1.3070 -4.2461 -0.9324 13 6 -0.5744 -4.6194 1.0941 14 6 -0.4368 -6.1272 1.1102 15 6 0.9656 -6.4969 0.6126 16 1 1.7173 -5.9928 1.2201 17 7 1.1538 -7.9474 0.6957 18 6 1.5863 -8.5060 1.8434 19 8 1.8212 -7.8054 2.8108 20 6 1.7748 -9.9550 1.9262 21 6 2.2065 -10.6364 3.0304 22 6 2.2937 -11.9927 2.8327 23 6 1.9445 -12.4119 1.6065 24 9 1.9581 -13.7018 1.2053 25 16 1.4733 -11.0982 0.6250 26 6 1.0882 -6.0431 -0.8416 27 6 0.8674 -4.5587 -0.9839 28 1 0.8534 -4.2970 -2.0418 29 6 1.9505 -3.7192 -0.2833 30 1 -0.4850 0.8400 0.0004 31 1 -0.5428 -1.9910 -1.0211 32 1 -0.5643 -2.1603 0.7559 33 1 0.2039 -4.1993 1.7311 34 1 -1.5502 -4.3399 1.4914 35 1 -1.1870 -6.5641 0.4513 36 1 -0.5764 -6.5005 2.1247 37 1 0.9670 -8.5056 -0.0752 38 1 2.4543 -10.1556 3.9651 39 1 2.6192 -12.6717 3.6069 40 1 2.0841 -6.2910 -1.2085 41 1 0.3470 -6.5706 -1.4421 42 1 2.1854 -4.1385 0.6950 43 1 2.8470 -3.6609 -0.9003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980244822.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:29 Heat of formation + Delta-G solvation = -45.628765 kcal Electronic energy + Delta-G solvation = -26679.109067 eV Core-core repulsion = 22764.939146 eV Total energy + Delta-G solvation = -3914.169920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -50.18912 -41.46197 -40.32703 -38.50673 -36.97817 -35.05084 -33.40141 -32.34971 -31.06100 -30.03538 -27.70635 -26.86028 -25.81102 -23.68177 -23.36932 -22.33565 -21.61742 -21.01990 -20.28379 -19.39160 -18.75858 -17.94609 -17.65028 -17.09455 -17.00101 -16.77432 -16.27529 -15.90139 -15.60151 -15.53383 -15.25202 -15.05227 -14.94453 -14.32640 -14.02045 -14.00964 -13.74563 -13.47592 -13.25852 -13.16277 -13.07913 -12.85662 -12.70514 -12.47772 -12.20711 -12.13884 -12.11012 -11.81811 -11.73923 -11.43444 -11.16656 -11.02721 -10.86941 -10.66320 -10.18642 -9.79156 -9.78551 -8.84954 -7.85141 -5.18652 -0.79804 -0.10360 0.48508 1.12787 1.44283 1.46090 1.55055 1.99176 2.06481 2.49579 3.20822 3.32153 3.62026 3.66824 3.74088 3.78751 4.02977 4.14263 4.15994 4.20980 4.26463 4.36292 4.52897 4.57443 4.65317 4.73890 4.75528 4.79089 4.91784 4.94219 5.04684 5.11034 5.12314 5.16583 5.25886 5.34004 5.42488 5.45970 5.51596 5.57171 5.76057 5.82970 6.21560 6.41225 7.08466 7.12134 7.79877 8.45558 9.25486 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.030665 B = 0.002213 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.871517 B =12651.997372 C =12852.162144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.976 3.024 4 H -0.285 1.285 5 H -0.295 1.295 6 H -0.270 1.270 7 C -0.242 4.242 8 H 0.078 0.922 9 N -0.628 5.628 10 C 0.190 3.810 11 C -0.095 4.095 12 H 0.101 0.899 13 C -0.097 4.097 14 C -0.113 4.113 15 C 0.149 3.851 16 H 0.064 0.936 17 N -0.704 5.704 18 C 0.590 3.410 19 O -0.568 6.568 20 C -0.283 4.283 21 C -0.036 4.036 22 C -0.179 4.179 23 C -0.033 4.033 24 F -0.102 7.102 25 S 0.283 5.717 26 C -0.098 4.098 27 C -0.077 4.077 28 H 0.077 0.923 29 C 0.132 3.868 30 H 0.246 0.754 31 H 0.006 0.994 32 H 0.003 0.997 33 H 0.029 0.971 34 H 0.061 0.939 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.412 0.588 38 H 0.164 0.836 39 H 0.178 0.822 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.015 0.985 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.490 -29.125 -1.264 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.195 1.195 7 C -0.371 4.371 8 H 0.095 0.905 9 N -0.355 5.355 10 C 0.065 3.935 11 C -0.114 4.114 12 H 0.119 0.881 13 C -0.135 4.135 14 C -0.151 4.151 15 C 0.045 3.955 16 H 0.082 0.918 17 N -0.355 5.355 18 C 0.376 3.624 19 O -0.449 6.449 20 C -0.404 4.404 21 C -0.069 4.069 22 C -0.212 4.212 23 C -0.171 4.171 24 F -0.081 7.081 25 S 0.548 5.452 26 C -0.136 4.136 27 C -0.097 4.097 28 H 0.095 0.905 29 C 0.007 3.993 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.021 0.979 33 H 0.048 0.952 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.249 0.751 38 H 0.181 0.819 39 H 0.196 0.804 40 H 0.101 0.899 41 H 0.121 0.879 42 H 0.033 0.967 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.125 -28.348 -2.112 28.427 hybrid contribution 0.846 0.890 1.541 1.971 sum 0.971 -27.458 -0.570 27.481 Atomic orbital electron populations 1.70193 1.06248 1.25175 1.58218 1.25651 0.96617 1.00938 1.02760 0.85092 0.77768 0.79346 0.77357 1.21177 1.22177 1.19485 1.19445 0.91479 0.84145 1.42078 0.90461 1.44897 1.02597 1.02136 1.85849 1.21225 0.83523 0.91662 0.97108 1.22353 0.98095 0.94669 0.96305 0.88071 1.21085 1.00904 0.95360 0.96166 1.21580 0.96967 0.95128 1.01424 1.20929 0.97362 0.78994 0.98200 0.91802 1.45761 1.67225 1.08600 1.13887 1.17102 0.76388 0.85780 0.83082 1.90876 1.52908 1.63323 1.37778 1.24433 1.18323 0.96746 1.00918 1.20649 0.94963 0.92322 0.99000 1.20449 1.06536 0.96666 0.97512 1.22171 1.11107 0.84503 0.99316 1.91544 1.94461 1.31834 1.90245 1.83094 1.60125 0.91475 1.10514 1.21085 1.04273 0.93964 0.94302 1.21271 0.94356 0.94220 0.99836 0.90511 1.21709 0.95642 0.85209 0.96716 0.94449 0.97569 0.97867 0.95200 0.91983 0.89036 0.92835 0.75126 0.81870 0.80441 0.89914 0.87858 0.96704 0.94234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.58 10.37 21.65 0.22 -58.36 16 2 C -0.07 -3.91 5.48 84.86 0.47 -3.45 16 3 Si 0.98 47.10 29.56 68.60 2.03 49.13 16 4 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 5 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.24 -14.08 10.27 84.04 0.86 -13.22 16 8 H 0.08 4.34 7.84 -2.91 -0.02 4.31 16 9 N -0.63 -33.15 3.41 -690.54 -2.35 -35.50 16 10 C 0.19 9.47 4.70 87.06 0.41 9.88 16 11 C -0.10 -3.31 3.59 -9.65 -0.03 -3.35 16 12 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 13 C -0.10 -3.20 4.59 30.08 0.14 -3.06 16 14 C -0.11 -2.86 5.49 30.19 0.17 -2.69 16 15 C 0.15 3.65 2.31 45.05 0.10 3.75 16 16 H 0.06 2.07 6.23 -2.38 -0.01 2.05 16 17 N -0.70 -13.41 5.09 -446.54 -2.27 -15.68 16 18 C 0.59 13.90 7.76 86.35 0.67 14.57 16 19 O -0.57 -18.83 16.50 -4.46 -0.07 -18.91 16 20 C -0.28 -4.89 6.44 24.03 0.15 -4.74 16 21 C -0.04 -0.57 10.00 21.71 0.22 -0.35 16 22 C -0.18 -2.21 10.16 21.14 0.21 -2.00 16 23 C -0.03 -0.42 8.10 66.90 0.54 0.12 16 24 F -0.10 -1.44 17.32 44.97 0.78 -0.66 16 25 S 0.28 3.06 22.15 -56.49 -1.25 1.81 16 26 C -0.10 -2.08 4.86 29.80 0.14 -1.93 16 27 C -0.08 -2.40 2.81 -10.88 -0.03 -2.43 16 28 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 29 C 0.13 5.44 6.21 86.43 0.54 5.98 16 30 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 31 H 0.01 0.34 7.37 -2.39 -0.02 0.32 16 32 H 0.00 0.18 7.18 -2.39 -0.02 0.16 16 33 H 0.03 1.20 7.21 -2.39 -0.02 1.18 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.41 4.86 7.72 -92.71 -0.72 4.15 16 38 H 0.16 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.02 0.64 6.17 -2.39 -0.01 0.63 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -75.19 357.74 1.97 -73.22 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: 0.33 Total: 7.86 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 4.56 Total: -2.92 kcal Atomic # 7 Polarization: -105.14 SS G_CDS: -4.40 Total: -109.54 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.07 Total: -18.91 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.78 Total: -0.66 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Atomic # 16 Polarization: 3.06 SS G_CDS: -1.25 Total: 1.81 kcal Total: -75.19 1.97 -73.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980244822.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.594 kcal (2) G-P(sol) polarization free energy of solvation -75.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds