Wall clock time and date at job start Tue Mar 31 2020 21:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.34235 * 126.28487 * 2 1 4 4 H 0.97002 * 125.73457 * 359.97438 * 3 2 1 5 5 N 1.39936 * 108.52502 * 180.29809 * 3 2 1 6 6 C 1.30526 * 108.89230 * 359.72533 * 5 3 2 7 7 Cl 1.73596 * 126.00318 * 180.02562 * 6 5 3 8 8 C 1.38072 * 126.28077 * 179.84620 * 2 1 3 9 9 C 1.47382 * 126.42085 * 359.96206 * 8 2 1 10 10 O 1.21607 * 120.00302 * 269.71339 * 9 8 2 11 11 N 1.34779 * 119.99780 * 89.99473 * 9 8 2 12 12 C 1.47194 * 135.99663 * 359.35338 * 11 9 8 13 13 C 1.53207 * 87.73397 * 153.42848 * 12 11 9 14 14 C 1.47147 * 135.99743 * 179.72398 * 11 9 8 15 15 C 1.52509 * 114.05532 * 139.66560 * 13 12 11 16 16 C 1.53199 * 109.36500 * 190.02437 * 15 13 12 17 17 C 1.53153 * 109.35644 * 301.10614 * 16 15 13 18 18 N 1.46899 * 109.07134 * 56.57505 * 17 16 15 19 19 C 1.36944 * 120.69989 * 124.52216 * 18 17 16 20 20 H 1.08000 * 119.99621 * 332.83190 * 19 18 17 21 21 C 1.38809 * 120.00208 * 152.82798 * 19 18 17 22 22 N 1.31620 * 120.00042 * 343.31067 * 21 19 18 23 23 Si 1.86803 * 119.99989 * 163.30403 * 21 19 18 24 24 H 1.48505 * 109.46655 * 90.00229 * 23 21 19 25 25 H 1.48497 * 109.47313 * 210.00086 * 23 21 19 26 26 H 1.48499 * 109.47026 * 330.00586 * 23 21 19 27 27 C 1.47137 * 118.60683 * 304.53927 * 18 17 16 28 28 H 1.08994 * 109.47402 * 270.15747 * 1 2 3 29 29 H 1.08999 * 109.46794 * 30.15596 * 1 2 3 30 30 H 1.08997 * 109.47483 * 150.15236 * 1 2 3 31 31 H 1.09003 * 113.49410 * 268.11637 * 12 11 9 32 32 H 1.09000 * 113.49411 * 38.63041 * 12 11 9 33 33 H 1.09001 * 113.48940 * 321.37215 * 14 11 9 34 34 H 1.09005 * 113.49050 * 91.81616 * 14 11 9 35 35 H 1.09001 * 109.48885 * 309.98915 * 15 13 12 36 36 H 1.08998 * 109.49165 * 70.05515 * 15 13 12 37 37 H 1.09002 * 109.48811 * 181.14614 * 16 15 13 38 38 H 1.08992 * 109.49231 * 61.07337 * 16 15 13 39 39 H 1.08991 * 109.53751 * 296.69543 * 17 16 15 40 40 H 1.08997 * 109.53335 * 176.44581 * 17 16 15 41 41 H 0.97001 * 119.99931 * 180.02562 * 22 21 19 42 42 H 1.09006 * 109.63755 * 291.52765 * 27 18 17 43 43 H 1.09001 * 109.80709 * 171.01780 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0047 -0.0004 5 7 3.6340 0.6552 -0.0069 6 6 3.6598 -0.6498 -0.0051 7 17 5.0841 -1.6423 -0.0111 8 6 2.3240 -1.1130 0.0030 9 6 1.8857 -2.5202 0.0076 10 8 1.7105 -3.0991 1.0625 11 7 1.6846 -3.1671 -1.1576 12 6 1.7786 -2.8280 -2.5869 13 6 2.0459 -4.3118 -2.8590 14 6 1.2685 -4.5203 -1.5588 15 6 1.3443 -4.8524 -4.1005 16 6 1.4749 -6.3784 -4.1339 17 6 2.9579 -6.7608 -4.1471 18 7 3.6176 -6.1652 -2.9775 19 6 4.3112 -6.9470 -2.0925 20 1 4.0444 -7.9858 -1.9656 21 6 5.3571 -6.4044 -1.3588 22 7 5.8990 -5.2637 -1.7298 23 14 5.9954 -7.2929 0.1553 24 1 7.0834 -8.2236 -0.2389 25 1 6.5209 -6.3004 1.1269 26 1 4.8895 -8.0610 0.7815 27 6 3.5172 -4.7111 -2.7764 28 1 -0.3634 0.0028 1.0276 29 1 -0.3633 0.8886 -0.5163 30 1 -0.3634 -0.8913 -0.5114 31 1 0.8404 -2.4706 -3.0113 32 1 2.6234 -2.1817 -2.8255 33 1 1.6813 -5.3069 -0.9272 34 1 0.1929 -4.6184 -1.7057 35 1 0.2897 -4.5782 -4.0706 36 1 1.8054 -4.4283 -4.9925 37 1 0.9917 -6.7652 -5.0311 38 1 0.9976 -6.8037 -3.2512 39 1 3.4230 -6.3852 -5.0585 40 1 3.0549 -7.8457 -4.1072 41 1 6.6301 -4.8847 -1.2173 42 1 4.0812 -4.1942 -3.5528 43 1 3.9144 -4.4454 -1.7968 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981803962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:19 Heat of formation + Delta-G solvation = 71.672447 kcal Electronic energy + Delta-G solvation = -28470.400779 eV Core-core repulsion = 24579.193677 eV Total energy + Delta-G solvation = -3891.207103 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.68041 -41.63892 -39.29531 -37.92198 -37.34736 -34.67295 -33.76995 -32.75152 -31.94165 -31.07969 -28.73665 -27.47423 -26.96967 -26.91919 -23.92493 -23.31983 -23.06780 -22.01987 -20.10451 -19.41779 -18.76842 -18.46392 -17.74595 -16.85217 -16.73182 -16.50606 -16.34792 -16.27226 -15.73200 -15.21755 -15.13246 -14.74195 -14.51396 -14.18070 -14.07454 -14.04998 -13.62905 -13.42424 -13.31829 -13.09347 -12.99338 -12.95308 -12.80035 -12.66490 -12.54669 -12.27839 -11.98367 -11.92633 -11.67548 -11.46255 -11.29276 -10.92649 -10.79092 -10.56467 -10.47813 -9.91985 -9.64158 -8.61047 -7.84271 -5.24982 0.40656 0.41353 0.94396 1.37027 1.43211 1.47117 1.47992 1.79545 2.11756 2.48942 3.27029 3.35723 3.43497 3.60287 3.79643 3.90304 4.03394 4.12288 4.17316 4.39184 4.41402 4.47925 4.58572 4.59288 4.62017 4.68478 4.75977 4.87701 4.94047 4.97440 5.05197 5.10804 5.14785 5.24311 5.35754 5.42400 5.55238 5.64408 5.74244 5.85746 5.95406 6.23421 6.42583 6.77687 7.11702 7.19996 7.94148 8.42688 9.19810 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011339 B = 0.005324 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.826478 B = 5258.133750 C = 6709.302923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.169 3.831 3 N -0.424 5.424 4 H 0.468 0.532 5 N -0.295 5.295 6 C 0.140 3.860 7 Cl 0.009 6.991 8 C -0.295 4.295 9 C 0.623 3.377 10 O -0.588 6.588 11 N -0.630 5.630 12 C 0.120 3.880 13 C -0.109 4.109 14 C 0.121 3.879 15 C -0.083 4.083 16 C -0.124 4.124 17 C 0.137 3.863 18 N -0.607 5.607 19 C -0.254 4.254 20 H 0.062 0.938 21 C -0.038 4.038 22 N -0.915 5.915 23 Si 0.937 3.063 24 H -0.279 1.279 25 H -0.303 1.303 26 H -0.276 1.276 27 C 0.210 3.790 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.133 0.867 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.052 0.948 39 H 0.016 0.984 40 H 0.046 0.954 41 H 0.242 0.758 42 H -0.006 1.006 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 14.423 -4.223 22.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.035 3.965 3 N -0.136 5.136 4 H 0.319 0.681 5 N -0.121 5.121 6 C -0.052 4.052 7 Cl 0.037 6.963 8 C -0.311 4.311 9 C 0.412 3.588 10 O -0.468 6.468 11 N -0.362 5.362 12 C -0.002 4.002 13 C -0.111 4.111 14 C -0.001 4.001 15 C -0.121 4.121 16 C -0.163 4.163 17 C 0.012 3.988 18 N -0.330 5.330 19 C -0.385 4.385 20 H 0.079 0.921 21 C -0.235 4.235 22 N -0.561 5.561 23 Si 0.767 3.233 24 H -0.206 1.206 25 H -0.230 1.230 26 H -0.201 1.201 27 C 0.085 3.915 28 H 0.121 0.879 29 H 0.143 0.857 30 H 0.107 0.893 31 H 0.150 0.850 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.134 0.866 35 H 0.115 0.885 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.071 0.929 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.012 0.988 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.018 15.243 -3.410 22.374 hybrid contribution 1.213 -1.060 1.271 2.052 sum -14.806 14.183 -2.139 20.614 Atomic orbital electron populations 1.20832 0.82148 1.06614 1.05776 1.21852 0.96313 0.84489 0.93837 1.45791 1.01672 1.09500 1.56618 0.68091 1.77081 0.98618 1.09750 1.26686 1.22790 0.89228 0.91056 1.02125 1.98496 1.36279 1.64864 1.96684 1.19730 0.91679 0.94149 1.25512 1.16841 0.75880 0.84573 0.81526 1.90740 1.54847 1.69168 1.32078 1.49561 1.65442 1.15320 1.05884 1.23294 1.03024 0.96527 0.77381 1.22461 0.97856 0.95213 0.95597 1.23045 1.00056 0.83356 0.93660 1.21236 1.00579 0.95228 0.95080 1.21907 0.96078 0.96400 1.01912 1.21096 0.92915 0.96426 0.88381 1.44260 1.59920 1.03554 1.25297 1.19331 1.08603 0.94634 1.15896 0.92057 1.25476 0.97053 0.98637 1.02312 1.70131 1.25386 1.21307 1.39304 0.85726 0.78482 0.77912 0.81206 1.20575 1.22992 1.20102 1.20102 0.89472 0.83007 0.98947 0.87874 0.85679 0.89321 0.84969 0.91871 0.94434 0.86626 0.88492 0.91161 0.89435 0.92883 0.96641 0.93558 0.94824 0.98792 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 10.25 71.23 0.73 -0.27 16 2 C 0.17 3.51 7.29 42.15 0.31 3.82 16 3 N -0.42 -7.88 7.28 -46.79 -0.34 -8.22 16 4 H 0.47 3.95 8.96 -213.42 -1.91 2.04 16 5 N -0.30 -8.69 12.64 -48.96 -0.62 -9.31 16 6 C 0.14 4.94 7.89 85.66 0.68 5.61 16 7 Cl 0.01 0.37 29.19 -2.72 -0.08 0.29 16 8 C -0.30 -9.58 5.70 -20.13 -0.11 -9.70 16 9 C 0.62 24.10 7.42 86.65 0.64 24.75 16 10 O -0.59 -27.92 17.88 -4.05 -0.07 -28.00 16 11 N -0.63 -21.72 3.48 -861.37 -3.00 -24.72 16 12 C 0.12 3.25 7.58 83.42 0.63 3.88 16 13 C -0.11 -3.57 0.96 -52.41 -0.05 -3.62 16 14 C 0.12 4.10 7.54 83.33 0.63 4.72 16 15 C -0.08 -2.05 5.11 30.50 0.16 -1.89 16 16 C -0.12 -3.49 6.03 30.71 0.19 -3.31 16 17 C 0.14 5.34 6.46 86.35 0.56 5.90 16 18 N -0.61 -29.92 3.01 -699.70 -2.10 -32.02 16 19 C -0.25 -14.25 9.60 84.03 0.81 -13.45 16 20 H 0.06 3.40 7.88 -2.91 -0.02 3.37 16 21 C -0.04 -2.23 4.93 84.86 0.42 -1.81 16 22 N -0.92 -55.38 11.16 21.65 0.24 -55.14 16 23 Si 0.94 48.29 29.59 68.60 2.03 50.32 16 24 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 26 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 27 C 0.21 9.84 4.42 86.15 0.38 10.22 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.12 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.09 1.07 7.96 -2.39 -0.02 1.05 16 31 H 0.13 2.22 8.10 -2.39 -0.02 2.20 16 32 H 0.06 1.88 8.12 -2.39 -0.02 1.87 16 33 H 0.04 1.64 8.11 -2.39 -0.02 1.62 16 34 H 0.12 2.92 8.06 -2.38 -0.02 2.90 16 35 H 0.10 1.62 8.09 -2.39 -0.02 1.60 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.58 8.03 -2.39 -0.02 1.56 16 39 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.05 1.82 7.93 -2.39 -0.02 1.80 16 41 H 0.24 14.63 8.31 -92.71 -0.77 13.86 16 42 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 43 H 0.05 2.93 5.94 -2.39 -0.01 2.92 16 Total: -1.00 -83.10 371.06 1.14 -81.96 By element: Atomic # 1 Polarization: 0.85 SS G_CDS: -0.87 Total: -0.02 kcal Atomic # 6 Polarization: 18.90 SS G_CDS: 5.96 Total: 24.85 kcal Atomic # 7 Polarization: -123.58 SS G_CDS: -5.82 Total: -129.40 kcal Atomic # 8 Polarization: -27.92 SS G_CDS: -0.07 Total: -28.00 kcal Atomic # 14 Polarization: 48.29 SS G_CDS: 2.03 Total: 50.32 kcal Atomic # 17 Polarization: 0.37 SS G_CDS: -0.08 Total: 0.29 kcal Total: -83.10 1.14 -81.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981803962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.630 kcal (2) G-P(sol) polarization free energy of solvation -83.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds