Wall clock time and date at job start Tue Mar 31 2020 20:52:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47494 * 274.78876 * 3 2 1 5 5 H 1.48502 * 109.47193 * 34.78476 * 3 2 1 6 6 H 1.48500 * 109.47570 * 154.78853 * 3 2 1 7 7 C 1.38814 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00389 * 187.94131 * 7 2 1 9 9 N 1.36940 * 119.99943 * 7.95035 * 7 2 1 10 10 C 1.49298 * 127.10133 * 8.09798 * 9 7 2 11 11 C 1.56227 * 106.50686 * 171.34710 * 10 9 7 12 12 C 1.52131 * 100.85036 * 336.52862 * 11 10 9 13 13 N 1.46493 * 111.09235 * 286.04580 * 12 11 10 14 14 C 1.34775 * 120.00663 * 298.98692 * 13 12 11 15 15 O 1.21279 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00336 * 180.02562 * 14 13 12 17 17 N 1.46507 * 109.47096 * 180.02562 * 16 14 13 18 18 C 1.35040 * 126.03510 * 124.99979 * 17 16 14 19 19 C 1.35376 * 107.72599 * 179.97438 * 18 17 16 20 20 Cl 1.73602 * 126.04633 * 179.97438 * 19 18 17 21 21 C 1.39924 * 107.90748 * 359.97438 * 19 18 17 22 22 N 1.30849 * 108.21371 * 359.76080 * 21 19 18 23 23 C 1.51175 * 122.13426 * 151.13140 * 12 11 10 24 24 C 1.55694 * 104.64341 * 218.81240 * 23 12 11 25 25 C 1.56284 * 105.93345 * 7.26943 * 24 23 12 26 26 C 1.42698 * 127.10632 * 188.10451 * 9 7 2 27 27 H 1.08998 * 108.16267 * 104.14562 * 26 9 7 28 28 H 0.97002 * 119.99795 * 359.97438 * 1 2 3 29 29 H 1.08994 * 110.05260 * 52.08294 * 10 9 7 30 30 H 1.09004 * 110.04643 * 290.60440 * 10 9 7 31 31 H 1.09002 * 111.15104 * 94.44106 * 11 10 9 32 32 H 1.09003 * 111.14952 * 218.61835 * 11 10 9 33 33 H 0.97008 * 120.00114 * 118.99038 * 13 12 11 34 34 H 1.09001 * 109.46901 * 299.99921 * 16 14 13 35 35 H 1.08999 * 109.47421 * 59.99944 * 16 14 13 36 36 H 1.08006 * 126.14228 * 359.97438 * 18 17 16 37 37 H 1.08003 * 125.89707 * 180.02562 * 21 19 18 38 38 H 1.09004 * 110.37864 * 100.03039 * 23 12 11 39 39 H 1.09001 * 110.51236 * 337.66256 * 23 12 11 40 40 H 1.08994 * 110.15960 * 248.15306 * 24 23 12 41 41 H 1.09004 * 110.16096 * 126.38121 * 24 23 12 42 42 H 1.09004 * 110.96815 * 266.13820 * 25 24 23 43 43 H 1.08998 * 111.00647 * 142.38895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3965 2.1049 -1.3951 5 1 1.5018 2.6213 0.7987 6 1 3.5947 1.4131 0.5964 7 6 2.0103 -1.2021 -0.0005 8 1 3.0825 -1.2067 0.1287 9 7 1.3355 -2.3823 -0.1651 10 6 -0.1042 -2.5545 -0.5207 11 6 -0.3130 -4.0771 -0.8016 12 6 1.1041 -4.4993 -1.1593 13 7 1.4742 -4.0248 -2.4950 14 6 0.7747 -4.4319 -3.5727 15 8 -0.1610 -5.1915 -3.4368 16 6 1.1558 -3.9442 -4.9467 17 7 0.2494 -4.5255 -5.9401 18 6 -0.4885 -3.8400 -6.8396 19 6 -1.1873 -4.7398 -7.5709 20 17 -2.2887 -4.3724 -8.8615 21 6 -0.8647 -6.0182 -7.1025 22 7 0.0002 -5.8910 -6.1290 23 6 1.6132 -5.9004 -0.9085 24 6 3.0830 -5.7059 -0.4331 25 6 3.2771 -4.1650 -0.2587 26 6 1.8632 -3.7015 -0.0320 27 1 1.5205 -4.1102 0.9186 28 1 -0.4850 0.8401 0.0004 29 1 -0.3410 -1.9742 -1.4124 30 1 -0.7348 -2.2379 0.3102 31 1 -0.6651 -4.5968 0.0896 32 1 -0.9931 -4.2329 -1.6390 33 1 2.2228 -3.4176 -2.6038 34 1 1.0817 -2.8572 -4.9799 35 1 2.1797 -4.2455 -5.1682 36 1 -0.5163 -2.7665 -6.9549 37 1 -1.2582 -6.9496 -7.4822 38 1 1.5854 -6.4848 -1.8283 39 1 1.0239 -6.3876 -0.1316 40 1 3.7743 -6.0890 -1.1836 41 1 3.2406 -6.2144 0.5181 42 1 3.6936 -3.7196 -1.1621 43 1 3.9030 -3.9455 0.6063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992263556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:54 Heat of formation + Delta-G solvation = 86.558588 kcal Electronic energy + Delta-G solvation = -27886.009011 eV Core-core repulsion = 23995.447420 eV Total energy + Delta-G solvation = -3890.561591 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40154 -40.49597 -38.19203 -36.48948 -34.52384 -33.42437 -33.06451 -31.78831 -30.24036 -29.89573 -27.53064 -27.02506 -25.71710 -24.11255 -22.11531 -21.29880 -20.74005 -20.41266 -19.66722 -18.86983 -17.58238 -17.14274 -16.53844 -15.80446 -15.68026 -14.82000 -14.77525 -14.68045 -14.47857 -14.09367 -13.98403 -13.73770 -13.56766 -13.31676 -12.69199 -12.45522 -12.37250 -12.06836 -11.80758 -11.50082 -11.47869 -11.39095 -11.10645 -10.96421 -10.89026 -10.59984 -10.54871 -10.33213 -10.13106 -10.08584 -9.93769 -9.78291 -9.54723 -9.14419 -8.74571 -8.59129 -8.49837 -6.92860 -5.85069 -3.19314 1.60348 1.83330 2.54699 2.66173 2.82137 3.29998 3.36396 3.38795 3.39097 4.36892 4.46823 4.53501 4.60101 4.82411 4.89159 4.91977 5.14750 5.16137 5.37760 5.38011 5.50131 5.53665 5.64538 5.75647 5.84840 5.89057 6.07903 6.16198 6.21992 6.26228 6.29763 6.34498 6.42412 6.58601 6.63768 6.76231 6.81550 7.07264 7.39742 7.47023 7.53253 7.66493 7.84441 8.10023 8.49974 9.03235 9.70738 10.40776 11.28361 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.003430 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.368683 B = 8160.450106 C = 9672.666305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.002 4.002 3 Si 0.908 3.092 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.235 4.235 8 H 0.079 0.921 9 N -0.582 5.582 10 C 0.182 3.818 11 C -0.141 4.141 12 C 0.133 3.867 13 N -0.686 5.686 14 C 0.500 3.500 15 O -0.517 6.517 16 C 0.113 3.887 17 N -0.347 5.347 18 C 0.075 3.925 19 C -0.187 4.187 20 Cl -0.049 7.049 21 C 0.055 3.945 22 N -0.249 5.249 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.114 4.114 26 C 0.159 3.841 27 H 0.022 0.978 28 H 0.253 0.747 29 H 0.042 0.958 30 H 0.049 0.951 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.401 0.599 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.183 0.817 37 H 0.189 0.811 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 -9.348 -11.863 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.200 4.200 3 Si 0.738 3.262 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.363 4.363 8 H 0.097 0.903 9 N -0.305 5.305 10 C 0.058 3.942 11 C -0.179 4.179 12 C 0.045 3.955 13 N -0.338 5.338 14 C 0.283 3.717 15 O -0.392 6.392 16 C -0.012 4.012 17 N -0.129 5.129 18 C -0.073 4.073 19 C -0.226 4.226 20 Cl -0.021 7.021 21 C -0.132 4.132 22 N -0.070 5.070 23 C -0.150 4.150 24 C -0.155 4.155 25 C -0.153 4.153 26 C 0.048 3.952 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.237 0.763 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.200 0.800 37 H 0.206 0.794 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.926 -10.138 -10.833 15.123 hybrid contribution 0.109 1.867 -0.706 1.999 sum 3.034 -8.271 -11.539 14.518 Atomic orbital electron populations 1.69942 1.04994 1.25300 1.55793 1.24813 0.95536 0.97747 1.01855 0.86172 0.78768 0.83750 0.77464 1.21685 1.21755 1.20579 1.18991 0.90810 0.82531 1.43984 0.90346 1.43627 1.06636 0.99172 1.81066 1.21906 0.84481 0.88582 0.99243 1.22800 0.95056 0.99161 1.00922 1.21551 0.97353 0.93804 0.82762 1.45564 1.34095 1.48653 1.05479 1.20199 0.83710 0.82144 0.85623 1.90746 1.28066 1.34668 1.85700 1.21645 0.93594 0.99853 0.86144 1.47832 1.34326 1.04580 1.26163 1.22237 0.94445 0.98956 0.91647 1.20692 1.06266 0.93912 1.01722 1.98315 1.61379 1.94731 1.47645 1.23871 0.96986 0.97725 0.94655 1.77617 1.18536 0.93645 1.17168 1.21870 0.95866 0.96066 1.01226 1.22821 0.96152 0.95911 1.00591 1.21832 0.97459 0.94479 1.01496 1.20846 0.92473 0.87482 0.94384 0.96056 0.93628 0.93976 0.93253 0.91581 0.90675 0.76337 0.85385 0.86704 0.79986 0.79424 0.91664 0.91063 0.92181 0.91875 0.91766 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.58 10.80 55.49 0.60 -24.98 16 2 C 0.00 -0.05 5.45 -17.43 -0.10 -0.15 16 3 Si 0.91 20.75 29.56 -169.99 -5.02 15.73 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.24 -5.95 10.26 -15.06 -0.15 -6.10 16 8 H 0.08 1.91 7.84 -52.49 -0.41 1.50 16 9 N -0.58 -13.38 3.16 -162.62 -0.51 -13.89 16 10 C 0.18 4.20 5.28 -0.76 0.00 4.19 16 11 C -0.14 -2.73 6.08 -25.44 -0.15 -2.88 16 12 C 0.13 2.26 0.43 -130.67 -0.06 2.21 16 13 N -0.69 -10.54 4.49 -46.55 -0.21 -10.75 16 14 C 0.50 7.69 7.29 -10.99 -0.08 7.61 16 15 O -0.52 -9.89 13.93 5.56 0.08 -9.81 16 16 C 0.11 1.27 6.99 -5.19 -0.04 1.24 16 17 N -0.35 -4.55 3.40 -62.50 -0.21 -4.76 16 18 C 0.07 0.86 11.43 -17.16 -0.20 0.66 16 19 C -0.19 -2.23 6.65 -39.97 -0.27 -2.49 16 20 Cl -0.05 -0.52 29.30 -51.86 -1.52 -2.04 16 21 C 0.06 0.69 12.02 -17.34 -0.21 0.48 16 22 N -0.25 -3.70 11.66 30.64 0.36 -3.34 16 23 C -0.11 -1.66 6.18 -26.21 -0.16 -1.82 16 24 C -0.12 -1.51 6.93 -23.53 -0.16 -1.68 16 25 C -0.11 -1.73 6.47 -26.21 -0.17 -1.90 16 26 C 0.16 2.98 2.68 -68.66 -0.18 2.80 16 27 H 0.02 0.45 7.94 -51.93 -0.41 0.03 16 28 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.04 1.07 7.76 -51.93 -0.40 0.67 16 30 H 0.05 1.28 7.52 -51.93 -0.39 0.89 16 31 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.54 6.28 -51.93 -0.33 1.21 16 33 H 0.40 5.74 7.56 -40.82 -0.31 5.43 16 34 H 0.13 1.13 8.07 -51.93 -0.42 0.71 16 35 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.18 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.19 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.06 1.01 7.85 -51.93 -0.41 0.60 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.94 7.17 -51.93 -0.37 0.56 16 43 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 363.02 15.07 5.47 5.47 Total: -1.00 -31.93 363.02 -8.87 -40.80 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.97 Total: 5.40 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.93 Total: 2.17 kcal Atomic # 7 Polarization: -57.75 SS G_CDS: 0.02 Total: -57.73 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.08 Total: -9.81 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.52 Total: -2.04 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.93 -8.87 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992263556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.362 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds