Wall clock time and date at job start Tue Mar 31 2020 20:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47494 * 274.78876 * 3 2 1 5 5 H 1.48502 * 109.47193 * 34.78476 * 3 2 1 6 6 H 1.48500 * 109.47570 * 154.78853 * 3 2 1 7 7 C 1.38814 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00389 * 187.94131 * 7 2 1 9 9 N 1.36940 * 119.99943 * 7.95035 * 7 2 1 10 10 C 1.49298 * 127.10133 * 8.09798 * 9 7 2 11 11 C 1.56227 * 106.50686 * 171.34710 * 10 9 7 12 12 C 1.52131 * 100.85036 * 336.52862 * 11 10 9 13 13 N 1.46493 * 111.09235 * 286.04580 * 12 11 10 14 14 C 1.34775 * 120.00663 * 298.98692 * 13 12 11 15 15 O 1.21279 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00336 * 180.02562 * 14 13 12 17 17 N 1.46507 * 109.47096 * 180.02562 * 16 14 13 18 18 C 1.35040 * 126.03510 * 124.99979 * 17 16 14 19 19 C 1.35376 * 107.72599 * 179.97438 * 18 17 16 20 20 Cl 1.73602 * 126.04633 * 179.97438 * 19 18 17 21 21 C 1.39924 * 107.90748 * 359.97438 * 19 18 17 22 22 N 1.30849 * 108.21371 * 359.76080 * 21 19 18 23 23 C 1.51175 * 122.13426 * 151.13140 * 12 11 10 24 24 C 1.55694 * 104.64341 * 218.81240 * 23 12 11 25 25 C 1.56284 * 105.93345 * 7.26943 * 24 23 12 26 26 C 1.42698 * 127.10632 * 188.10451 * 9 7 2 27 27 H 1.08998 * 108.16267 * 104.14562 * 26 9 7 28 28 H 0.97002 * 119.99795 * 359.97438 * 1 2 3 29 29 H 1.08994 * 110.05260 * 52.08294 * 10 9 7 30 30 H 1.09004 * 110.04643 * 290.60440 * 10 9 7 31 31 H 1.09002 * 111.15104 * 94.44106 * 11 10 9 32 32 H 1.09003 * 111.14952 * 218.61835 * 11 10 9 33 33 H 0.97008 * 120.00114 * 118.99038 * 13 12 11 34 34 H 1.09001 * 109.46901 * 299.99921 * 16 14 13 35 35 H 1.08999 * 109.47421 * 59.99944 * 16 14 13 36 36 H 1.08006 * 126.14228 * 359.97438 * 18 17 16 37 37 H 1.08003 * 125.89707 * 180.02562 * 21 19 18 38 38 H 1.09004 * 110.37864 * 100.03039 * 23 12 11 39 39 H 1.09001 * 110.51236 * 337.66256 * 23 12 11 40 40 H 1.08994 * 110.15960 * 248.15306 * 24 23 12 41 41 H 1.09004 * 110.16096 * 126.38121 * 24 23 12 42 42 H 1.09004 * 110.96815 * 266.13820 * 25 24 23 43 43 H 1.08998 * 111.00647 * 142.38895 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3965 2.1049 -1.3951 5 1 1.5018 2.6213 0.7987 6 1 3.5947 1.4131 0.5964 7 6 2.0103 -1.2021 -0.0005 8 1 3.0825 -1.2067 0.1287 9 7 1.3355 -2.3823 -0.1651 10 6 -0.1042 -2.5545 -0.5207 11 6 -0.3130 -4.0771 -0.8016 12 6 1.1041 -4.4993 -1.1593 13 7 1.4742 -4.0248 -2.4950 14 6 0.7747 -4.4319 -3.5727 15 8 -0.1610 -5.1915 -3.4368 16 6 1.1558 -3.9442 -4.9467 17 7 0.2494 -4.5255 -5.9401 18 6 -0.4885 -3.8400 -6.8396 19 6 -1.1873 -4.7398 -7.5709 20 17 -2.2887 -4.3724 -8.8615 21 6 -0.8647 -6.0182 -7.1025 22 7 0.0002 -5.8910 -6.1290 23 6 1.6132 -5.9004 -0.9085 24 6 3.0830 -5.7059 -0.4331 25 6 3.2771 -4.1650 -0.2587 26 6 1.8632 -3.7015 -0.0320 27 1 1.5205 -4.1102 0.9186 28 1 -0.4850 0.8401 0.0004 29 1 -0.3410 -1.9742 -1.4124 30 1 -0.7348 -2.2379 0.3102 31 1 -0.6651 -4.5968 0.0896 32 1 -0.9931 -4.2329 -1.6390 33 1 2.2228 -3.4176 -2.6038 34 1 1.0817 -2.8572 -4.9799 35 1 2.1797 -4.2455 -5.1682 36 1 -0.5163 -2.7665 -6.9549 37 1 -1.2582 -6.9496 -7.4822 38 1 1.5854 -6.4848 -1.8283 39 1 1.0239 -6.3876 -0.1316 40 1 3.7743 -6.0890 -1.1836 41 1 3.2406 -6.2144 0.5181 42 1 3.6936 -3.7196 -1.1621 43 1 3.9030 -3.9455 0.6063 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992263556.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:53 Heat of formation + Delta-G solvation = 66.596687 kcal Electronic energy + Delta-G solvation = -27886.874624 eV Core-core repulsion = 23995.447420 eV Total energy + Delta-G solvation = -3891.427204 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.37353 -41.83804 -39.51015 -37.34914 -36.17959 -34.55037 -34.24029 -33.53638 -31.66409 -31.00494 -28.63513 -28.49872 -27.10944 -25.92201 -23.23488 -22.25572 -22.16915 -21.55747 -21.19474 -20.21173 -18.63099 -18.36307 -18.14643 -17.35335 -16.73534 -16.39369 -15.92933 -15.86746 -15.70772 -15.65508 -15.13364 -15.04458 -14.67404 -14.21251 -14.13618 -14.04410 -13.63064 -13.44093 -13.05997 -12.99182 -12.81304 -12.67781 -12.58969 -12.35085 -12.20629 -12.10496 -12.03769 -11.78601 -11.56377 -11.46420 -11.36086 -11.21080 -10.84979 -10.68237 -10.37293 -9.92120 -9.41107 -8.85018 -7.85040 -5.20201 0.68928 0.96754 1.49369 1.50769 1.59430 1.63158 1.64680 1.78000 2.24165 2.51583 3.08694 3.35330 3.55975 3.68916 3.78396 3.86242 3.89395 4.06765 4.08788 4.14143 4.29288 4.37837 4.41610 4.51444 4.55857 4.61242 4.62740 4.80814 4.95147 4.98379 5.06593 5.11309 5.23266 5.31993 5.37492 5.42257 5.55180 5.60943 5.66850 5.72759 5.80501 6.17787 6.54368 6.63675 7.03809 7.30652 7.77334 8.50890 9.28458 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.011987 B = 0.003430 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.368683 B = 8160.450106 C = 9672.666305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.061 4.061 3 Si 0.973 3.027 4 H -0.286 1.286 5 H -0.305 1.305 6 H -0.266 1.266 7 C -0.231 4.231 8 H 0.091 0.909 9 N -0.593 5.593 10 C 0.197 3.803 11 C -0.130 4.130 12 C 0.144 3.856 13 N -0.684 5.684 14 C 0.497 3.503 15 O -0.558 6.558 16 C 0.116 3.884 17 N -0.356 5.356 18 C 0.076 3.924 19 C -0.199 4.199 20 Cl -0.040 7.040 21 C 0.053 3.947 22 N -0.291 5.291 23 C -0.107 4.107 24 C -0.102 4.102 25 C -0.108 4.108 26 C 0.147 3.853 27 H 0.008 0.992 28 H 0.245 0.755 29 H 0.011 0.989 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.408 0.592 34 H 0.155 0.845 35 H 0.147 0.853 36 H 0.212 0.788 37 H 0.208 0.792 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.349 -9.873 -12.943 17.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.255 4.255 3 Si 0.802 3.198 4 H -0.212 1.212 5 H -0.233 1.233 6 H -0.190 1.190 7 C -0.360 4.360 8 H 0.109 0.891 9 N -0.316 5.316 10 C 0.072 3.928 11 C -0.169 4.169 12 C 0.056 3.944 13 N -0.336 5.336 14 C 0.282 3.718 15 O -0.436 6.436 16 C -0.008 4.008 17 N -0.138 5.138 18 C -0.072 4.072 19 C -0.238 4.238 20 Cl -0.012 7.012 21 C -0.135 4.135 22 N -0.111 5.111 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.146 4.146 26 C 0.038 3.962 27 H 0.025 0.975 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.027 0.973 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.245 0.755 34 H 0.173 0.827 35 H 0.164 0.836 36 H 0.228 0.772 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.092 0.908 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.396 -10.690 -11.922 16.898 hybrid contribution -0.712 2.004 -0.349 2.155 sum 4.684 -8.687 -12.271 15.747 Atomic orbital electron populations 1.70156 1.06602 1.25246 1.57999 1.25590 0.96189 1.00967 1.02717 0.85145 0.77890 0.79554 0.77232 1.21249 1.23276 1.19004 1.19402 0.91446 0.83261 1.41856 0.89125 1.43734 1.06587 1.00398 1.80853 1.21539 0.84532 0.90516 0.96192 1.22621 0.96966 0.96577 1.00730 1.21402 0.94799 0.95001 0.83240 1.45527 1.34337 1.48751 1.04963 1.20881 0.82726 0.81209 0.86937 1.90729 1.29789 1.36553 1.86509 1.21828 0.94736 1.01153 0.83123 1.47980 1.34891 1.04287 1.26661 1.22771 0.93372 1.00241 0.90781 1.20844 1.06741 0.93920 1.02276 1.98316 1.61047 1.94644 1.47181 1.24284 0.96283 0.98926 0.93986 1.77550 1.20079 0.94996 1.18511 1.21851 0.97307 0.94164 1.01269 1.22749 0.94857 0.94215 1.02156 1.21846 0.94717 0.95898 1.02171 1.21052 0.95515 0.85306 0.94359 0.97477 0.94617 0.97012 0.97344 0.91060 0.91830 0.75495 0.82697 0.83595 0.77162 0.77522 0.91963 0.90853 0.89849 0.90243 0.90769 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.13 10.80 21.65 0.23 -54.89 16 2 C -0.06 -3.25 5.45 84.86 0.46 -2.78 16 3 Si 0.97 42.74 29.56 68.60 2.03 44.77 16 4 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.31 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.23 -11.60 10.26 84.03 0.86 -10.74 16 8 H 0.09 4.26 7.84 -2.91 -0.02 4.24 16 9 N -0.59 -27.43 3.16 -668.40 -2.11 -29.54 16 10 C 0.20 9.49 5.28 86.96 0.46 9.95 16 11 C -0.13 -5.17 6.08 31.43 0.19 -4.98 16 12 C 0.14 4.76 0.43 4.35 0.00 4.77 16 13 N -0.68 -20.07 4.49 -419.58 -1.89 -21.95 16 14 C 0.50 14.72 7.29 87.66 0.64 15.36 16 15 O -0.56 -21.26 13.93 -3.03 -0.04 -21.30 16 16 C 0.12 2.35 6.99 85.63 0.60 2.95 16 17 N -0.36 -8.77 3.40 -351.65 -1.19 -9.96 16 18 C 0.08 1.60 11.43 83.54 0.95 2.56 16 19 C -0.20 -4.48 6.65 22.02 0.15 -4.34 16 20 Cl -0.04 -0.79 29.30 -2.72 -0.08 -0.87 16 21 C 0.05 1.27 12.02 85.25 1.02 2.29 16 22 N -0.29 -8.38 11.66 -56.98 -0.66 -9.05 16 23 C -0.11 -2.96 6.18 30.93 0.19 -2.77 16 24 C -0.10 -2.28 6.93 32.67 0.23 -2.05 16 25 C -0.11 -2.97 6.47 30.93 0.20 -2.77 16 26 C 0.15 5.38 2.68 46.51 0.12 5.50 16 27 H 0.01 0.31 7.94 -2.39 -0.02 0.29 16 28 H 0.24 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.01 0.62 7.76 -2.39 -0.02 0.60 16 30 H 0.01 0.46 7.52 -2.38 -0.02 0.45 16 31 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.06 2.69 6.28 -2.39 -0.01 2.67 16 33 H 0.41 10.82 7.56 -92.70 -0.70 10.12 16 34 H 0.16 2.29 8.07 -2.39 -0.02 2.27 16 35 H 0.15 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.21 2.99 8.06 -2.91 -0.02 2.97 16 37 H 0.21 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.06 1.80 7.85 -2.39 -0.02 1.78 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 1.91 7.17 -2.38 -0.02 1.89 16 43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -71.70 363.02 2.70 -68.99 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.34 Total: 20.86 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 6.08 Total: 12.95 kcal Atomic # 7 Polarization: -119.77 SS G_CDS: -5.62 Total: -125.39 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.04 Total: -21.30 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -0.08 Total: -0.87 kcal Total: -71.70 2.70 -68.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992263556.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.589 kcal (2) G-P(sol) polarization free energy of solvation -71.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds