Wall clock time and date at job start Tue Mar 31 2020 21:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.47294 * 269.99778 * 3 2 1 5 5 H 1.48499 * 109.47218 * 29.99638 * 3 2 1 6 6 H 1.48496 * 109.47166 * 149.99470 * 3 2 1 7 7 C 1.38811 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00195 * 180.02562 * 7 2 1 9 9 N 1.36943 * 120.00012 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99752 * 180.27737 * 9 7 2 11 11 H 1.08997 * 109.01371 * 33.63772 * 10 9 7 12 12 C 1.52824 * 109.02484 * 274.72207 * 10 9 7 13 13 C 1.53330 * 108.09300 * 180.49558 * 12 10 9 14 14 C 1.52590 * 108.40839 * 64.12674 * 13 12 10 15 15 C 1.53005 * 111.05630 * 297.65021 * 14 13 12 16 16 H 1.08995 * 112.07472 * 286.66290 * 15 14 13 17 17 C 1.55344 * 106.42029 * 162.78729 * 15 14 13 18 18 N 1.47169 * 106.96543 * 268.38851 * 17 15 14 19 19 C 1.34783 * 125.64974 * 179.04988 * 18 17 15 20 20 O 1.21736 * 119.99620 * 180.02562 * 19 18 17 21 21 C 1.46290 * 119.99909 * 359.97438 * 19 18 17 22 22 S 1.75822 * 125.46716 * 0.02969 * 21 19 18 23 23 C 1.70591 * 91.60765 * 179.97438 * 22 21 19 24 24 C 1.33731 * 111.04395 * 0.02562 * 23 22 21 25 25 C 1.36925 * 125.46215 * 179.71778 * 21 19 18 26 26 F 1.35100 * 123.40803 * 0.02562 * 25 21 19 27 27 C 1.47821 * 108.70365 * 359.04406 * 18 17 15 28 28 C 1.50734 * 109.02645 * 152.48594 * 10 9 7 29 29 H 1.09001 * 109.26906 * 294.34812 * 28 10 9 30 30 H 0.96999 * 119.99739 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99803 * 359.97438 * 9 7 2 32 32 H 1.09000 * 109.73849 * 300.14539 * 12 10 9 33 33 H 1.09002 * 109.73838 * 60.84513 * 12 10 9 34 34 H 1.08999 * 109.67797 * 183.85676 * 13 12 10 35 35 H 1.08999 * 109.67941 * 304.40092 * 13 12 10 36 36 H 1.09003 * 109.16091 * 58.05616 * 14 13 12 37 37 H 1.08999 * 109.16521 * 177.24316 * 14 13 12 38 38 H 1.08999 * 109.96577 * 27.76667 * 17 15 14 39 39 H 1.09006 * 109.96319 * 149.01351 * 17 15 14 40 40 H 1.07998 * 124.47787 * 179.97438 * 23 22 21 41 41 H 1.07994 * 122.45470 * 180.02562 * 24 23 22 42 42 H 1.09001 * 110.51590 * 218.00024 * 27 18 17 43 43 H 1.09000 * 110.51054 * 95.28688 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0072 11 1 2.9759 -3.5339 0.5820 12 6 2.4166 -4.0326 -1.4300 13 6 3.1703 -5.3675 -1.3992 14 6 2.2238 -6.4433 -0.8747 15 6 1.7828 -6.1365 0.5579 16 1 2.5811 -6.3127 1.2789 17 6 0.5236 -7.0060 0.8255 18 7 -0.6464 -6.1911 0.4610 19 6 -1.9325 -6.5884 0.5295 20 8 -2.8231 -5.8266 0.2002 21 6 -2.2580 -7.9353 0.9983 22 16 -1.0912 -9.1482 1.5070 23 6 -2.3316 -10.2707 1.8412 24 6 -3.5348 -9.7486 1.5803 25 6 -3.5206 -8.4516 1.1171 26 9 -4.6392 -7.7603 0.8071 27 6 -0.1774 -4.8646 0.0076 28 6 1.2061 -4.7125 0.6644 29 1 1.0670 -4.4596 1.7155 30 1 -0.4850 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0005 32 1 1.5068 -4.1371 -2.0212 33 1 3.0521 -3.2609 -1.8646 34 1 3.4990 -5.6267 -2.4056 35 1 4.0345 -5.2859 -0.7400 36 1 1.3447 -6.4906 -1.5173 37 1 2.7321 -7.4073 -0.8939 38 1 0.5558 -7.9063 0.2119 39 1 0.4751 -7.2759 1.8805 40 1 -2.1669 -11.2711 2.2133 41 1 -4.4507 -10.3015 1.7273 42 1 -0.8526 -4.0819 0.3535 43 1 -0.0891 -4.8415 -1.0786 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992704076.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:32 Heat of formation + Delta-G solvation = -32.160475 kcal Electronic energy + Delta-G solvation = -27527.577662 eV Core-core repulsion = 23613.991771 eV Total energy + Delta-G solvation = -3913.585892 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.97083 -40.61253 -38.74792 -37.40458 -35.50971 -33.88021 -31.64551 -31.09951 -29.91466 -28.81271 -26.73825 -25.59446 -24.18968 -23.44547 -21.80029 -21.10956 -20.87197 -19.64288 -18.54110 -18.29918 -17.10526 -16.75740 -16.38765 -16.18563 -15.76293 -15.12506 -14.96370 -14.67413 -14.50208 -14.16368 -13.98813 -13.84284 -13.56728 -13.34600 -13.02086 -12.82022 -12.64479 -12.57633 -12.21640 -11.98625 -11.81047 -11.60554 -11.13931 -11.03493 -10.98241 -10.84213 -10.73784 -10.24150 -10.17596 -10.04468 -9.94190 -9.72782 -9.53295 -9.27501 -8.89785 -8.83890 -8.47052 -6.95475 -5.74123 -3.04074 0.09580 1.02265 1.45813 1.89247 2.88377 3.08505 3.44734 3.49490 3.51833 4.00169 4.31331 4.40491 4.55783 4.62006 4.74718 4.83068 4.93829 5.16676 5.22516 5.27630 5.35549 5.38669 5.50234 5.56502 5.62041 5.70471 5.73498 5.80929 5.85537 5.99183 6.00772 6.04280 6.21337 6.23539 6.31422 6.36540 6.48033 6.57350 6.71530 6.89694 7.09759 7.47486 7.71254 8.12385 8.43432 9.54602 10.11043 10.45116 11.48084 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.016888 B = 0.003166 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.610676 B = 8841.547467 C =10078.388579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.241 4.241 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.192 3.808 11 H 0.052 0.948 12 C -0.136 4.136 13 C -0.118 4.118 14 C -0.113 4.113 15 C -0.082 4.082 16 H 0.100 0.900 17 C 0.087 3.913 18 N -0.611 5.611 19 C 0.599 3.401 20 O -0.516 6.516 21 C -0.307 4.307 22 S 0.267 5.733 23 C -0.231 4.231 24 C -0.177 4.177 25 C 0.159 3.841 26 F -0.103 7.103 27 C 0.119 3.881 28 C -0.096 4.096 29 H 0.079 0.921 30 H 0.256 0.744 31 H 0.384 0.616 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.177 0.823 41 H 0.155 0.845 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 -25.527 3.404 25.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.372 4.372 8 H 0.088 0.912 9 N -0.368 5.368 10 C 0.082 3.918 11 H 0.070 0.930 12 C -0.177 4.177 13 C -0.156 4.156 14 C -0.150 4.150 15 C -0.102 4.102 16 H 0.118 0.882 17 C -0.038 4.038 18 N -0.345 5.345 19 C 0.387 3.613 20 O -0.394 6.394 21 C -0.429 4.429 22 S 0.534 5.466 23 C -0.368 4.368 24 C -0.209 4.209 25 C 0.124 3.876 26 F -0.082 7.082 27 C -0.002 4.002 28 C -0.116 4.116 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.219 0.781 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.194 0.806 41 H 0.173 0.827 42 H 0.106 0.894 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.602 -25.009 3.360 25.367 hybrid contribution -1.797 0.861 -0.097 1.995 sum 0.806 -24.148 3.262 24.380 Atomic orbital electron populations 1.69666 1.05073 1.25709 1.57336 1.24751 0.95471 0.97667 1.02948 0.86222 0.78616 0.84042 0.77472 1.21775 1.21844 1.20809 1.19210 0.90929 0.84053 1.42996 0.91161 1.42525 1.05856 0.99670 1.88723 1.19557 0.93964 0.85291 0.93032 0.93034 1.22327 0.99790 0.95290 1.00268 1.21526 0.98098 0.95790 1.00166 1.21577 0.99809 0.98581 0.95081 1.22209 0.95108 0.94536 0.98300 0.88172 1.22543 0.86473 0.94554 1.00217 1.48438 1.04248 1.16555 1.65283 1.16261 0.81785 0.84593 0.78685 1.90930 1.45678 1.53682 1.49086 1.24676 0.97344 1.01592 1.19274 1.83443 1.05613 0.99832 1.57668 1.25428 0.98383 1.06447 1.06549 1.19824 1.00411 0.94254 1.06437 1.16898 0.81875 0.90158 0.98683 1.91588 1.48362 1.78484 1.89736 1.22260 0.95401 0.82998 0.99583 1.21813 0.94307 0.94148 1.01310 0.90300 0.93451 0.78140 0.92468 0.91702 0.92619 0.92089 0.91952 0.92276 0.90767 0.91063 0.80603 0.82748 0.89379 0.90625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.27 13.06 55.49 0.72 -27.54 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.24 -6.52 9.91 -15.06 -0.15 -6.67 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.73 -17.54 5.01 -54.62 -0.27 -17.81 16 10 C 0.19 3.51 2.46 -69.16 -0.17 3.34 16 11 H 0.05 0.96 8.05 -51.93 -0.42 0.54 16 12 C -0.14 -2.25 5.36 -26.65 -0.14 -2.39 16 13 C -0.12 -1.44 5.93 -26.77 -0.16 -1.60 16 14 C -0.11 -1.21 4.62 -26.94 -0.12 -1.33 16 15 C -0.08 -0.91 3.61 -88.85 -0.32 -1.23 16 16 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 17 C 0.09 0.92 4.46 -2.43 -0.01 0.91 16 18 N -0.61 -9.08 3.34 -171.73 -0.57 -9.65 16 19 C 0.60 10.07 7.81 -13.02 -0.10 9.97 16 20 O -0.52 -10.99 16.41 5.16 0.08 -10.91 16 21 C -0.31 -4.05 6.38 -36.82 -0.23 -4.28 16 22 S 0.27 2.13 18.42 -107.50 -1.98 0.15 16 23 C -0.23 -1.58 10.91 29.15 0.32 -1.26 16 24 C -0.18 -1.58 10.15 -41.35 -0.42 -2.00 16 25 C 0.16 2.05 7.48 -40.24 -0.30 1.75 16 26 F -0.10 -1.61 16.42 2.25 0.04 -1.57 16 27 C 0.12 2.01 5.06 -2.84 -0.01 2.00 16 28 C -0.10 -1.47 2.50 -90.76 -0.23 -1.70 16 29 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 31 H 0.38 10.04 6.45 -40.82 -0.26 9.78 16 32 H 0.06 1.00 6.80 -51.93 -0.35 0.65 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.74 7.16 -51.93 -0.37 0.37 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 39 H 0.07 0.65 6.98 -51.93 -0.36 0.29 16 40 H 0.18 0.62 8.06 -52.49 -0.42 0.20 16 41 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 42 H 0.09 1.78 7.43 -51.93 -0.39 1.40 16 43 H 0.08 1.32 6.15 -51.93 -0.32 1.00 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -33.56 352.24 -9.59 -43.15 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.74 Total: 6.50 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.15 Total: -4.94 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.12 Total: -55.00 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.98 Total: 0.15 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.56 -9.59 -43.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992704076.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.988 kcal (2) G-P(sol) polarization free energy of solvation -33.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds