Wall clock time and date at job start Tue Mar 31 2020 20:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47228 * 269.99449 * 3 2 1 5 5 H 1.48502 * 109.47164 * 29.99817 * 3 2 1 6 6 H 1.48499 * 109.46922 * 149.99815 * 3 2 1 7 7 C 1.38817 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99722 * 179.97438 * 9 7 2 11 11 H 1.09000 * 108.20512 * 37.81310 * 10 9 7 12 12 C 1.51492 * 108.16462 * 280.69235 * 10 9 7 13 13 C 1.52645 * 110.89846 * 191.55529 * 12 10 9 14 14 C 1.52862 * 108.65787 * 59.79438 * 13 12 10 15 15 C 1.51703 * 109.47497 * 295.17857 * 14 13 12 16 16 H 1.08998 * 111.93299 * 289.44406 * 15 14 13 17 17 C 1.55067 * 106.94650 * 166.89512 * 15 14 13 18 18 N 1.47077 * 105.85236 * 273.66854 * 17 15 14 19 19 C 1.34774 * 125.44273 * 160.40112 * 18 17 15 20 20 O 1.21732 * 119.99886 * 355.11184 * 19 18 17 21 21 C 1.46343 * 119.99759 * 175.11356 * 19 18 17 22 22 C 1.36740 * 125.43503 * 185.49233 * 21 19 18 23 23 C 1.37336 * 113.33229 * 179.97438 * 22 21 19 24 24 C 1.34213 * 115.04817 * 359.97438 * 23 22 21 25 25 F 1.35100 * 124.54339 * 180.02562 * 24 23 22 26 26 S 1.70625 * 110.91397 * 359.72300 * 24 23 22 27 27 C 1.47136 * 109.11290 * 340.40204 * 18 17 15 28 28 C 1.49690 * 108.30110 * 155.00217 * 10 9 7 29 29 H 1.09000 * 107.66977 * 280.30935 * 28 10 9 30 30 H 0.97002 * 120.00258 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99965 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.18912 * 311.92114 * 12 10 9 33 33 H 1.08998 * 109.18907 * 71.19031 * 12 10 9 34 34 H 1.08998 * 109.60619 * 179.55278 * 13 12 10 35 35 H 1.09007 * 109.60349 * 300.04778 * 13 12 10 36 36 H 1.09005 * 109.43913 * 55.10550 * 14 13 12 37 37 H 1.09003 * 109.44220 * 175.03627 * 14 13 12 38 38 H 1.08996 * 110.17486 * 154.57434 * 17 15 14 39 39 H 1.08999 * 110.17169 * 32.75859 * 17 15 14 40 40 H 1.07998 * 123.32924 * 0.02562 * 22 21 19 41 41 H 1.07999 * 122.47809 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.98010 * 118.85302 * 27 18 17 43 43 H 1.09005 * 109.97706 * 240.10450 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9367 -3.5427 0.6354 12 6 2.5255 -3.9323 -1.4139 13 6 3.0442 -5.3617 -1.5473 14 6 1.9142 -6.3273 -1.1904 15 6 1.5442 -6.1550 0.2707 16 1 2.3219 -6.5322 0.9347 17 6 0.1993 -6.8960 0.4868 18 7 -0.8527 -5.9291 0.1381 19 6 -2.1259 -6.2391 -0.1769 20 8 -2.4621 -7.4050 -0.2748 21 6 -3.1042 -5.1741 -0.4012 22 6 -4.4412 -5.3590 -0.6203 23 6 -5.1304 -4.1848 -0.8003 24 6 -4.3841 -3.0715 -0.7309 25 9 -4.8638 -1.8172 -0.8787 26 16 -2.7497 -3.4521 -0.4226 27 6 -0.2929 -4.5693 0.1880 28 6 1.1776 -4.7079 0.6011 29 1 1.2229 -4.5980 1.6846 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.6919 -3.7879 -2.1012 33 1 3.3242 -3.2359 -1.6693 34 1 3.3670 -5.5394 -2.5731 35 1 3.8821 -5.5117 -0.8664 36 1 1.0446 -6.1138 -1.8122 37 1 2.2431 -7.3515 -1.3661 38 1 0.1005 -7.1994 1.5290 39 1 0.1408 -7.7668 -0.1662 40 1 -4.9090 -6.3320 -0.6480 41 1 -6.1943 -4.1592 -0.9842 42 1 -0.3614 -4.1020 -0.7944 43 1 -0.8320 -3.9714 0.9230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992931179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:59 Heat of formation + Delta-G solvation = -30.875179 kcal Electronic energy + Delta-G solvation = -28004.759516 eV Core-core repulsion = 24091.229359 eV Total energy + Delta-G solvation = -3913.530157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -48.94130 -40.69495 -38.88922 -37.22804 -35.50990 -34.18047 -31.78997 -31.15941 -29.38539 -28.76345 -26.85913 -25.44691 -24.12542 -23.51135 -21.83439 -21.41984 -20.44366 -19.47980 -18.64152 -18.25574 -17.23030 -16.64475 -16.28291 -16.14765 -15.79871 -15.21746 -15.02372 -14.68219 -14.36556 -14.07542 -13.93197 -13.77618 -13.42851 -13.24395 -13.04495 -12.72639 -12.62778 -12.33216 -12.04790 -11.96031 -11.82382 -11.46177 -11.16297 -11.05383 -11.00029 -10.87081 -10.54932 -10.29336 -10.20500 -10.09994 -9.92134 -9.70408 -9.62109 -8.93496 -8.84640 -8.70111 -8.41226 -7.05072 -5.84219 -3.13275 0.39116 1.17679 1.76193 2.20410 2.94045 3.18968 3.39366 3.45214 3.46636 4.32585 4.36829 4.46038 4.64490 4.78017 4.83280 5.17104 5.24192 5.27841 5.34705 5.40382 5.46348 5.51368 5.59001 5.66603 5.70680 5.72318 5.78325 5.84810 5.90600 5.95736 6.01271 6.12351 6.18394 6.20411 6.26690 6.33715 6.44316 6.52894 6.65995 6.85240 7.06923 7.44863 7.65082 8.10058 8.33969 9.45761 9.99119 10.33788 11.38234 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008758 B = 0.005665 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.408357 B = 4941.685971 C = 7749.269573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.010 4.010 3 Si 0.904 3.096 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.187 3.813 11 H 0.048 0.952 12 C -0.130 4.130 13 C -0.118 4.118 14 C -0.111 4.111 15 C -0.088 4.088 16 H 0.097 0.903 17 C 0.111 3.889 18 N -0.610 5.610 19 C 0.609 3.391 20 O -0.538 6.538 21 C -0.284 4.284 22 C -0.039 4.039 23 C -0.197 4.197 24 C -0.040 4.040 25 F -0.100 7.100 26 S 0.303 5.697 27 C 0.092 3.908 28 C -0.081 4.081 29 H 0.076 0.924 30 H 0.255 0.745 31 H 0.382 0.618 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.084 0.916 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.795 -12.513 -0.389 12.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.373 5.373 10 C 0.078 3.922 11 H 0.066 0.934 12 C -0.170 4.170 13 C -0.156 4.156 14 C -0.149 4.149 15 C -0.108 4.108 16 H 0.116 0.884 17 C -0.012 4.012 18 N -0.343 5.343 19 C 0.398 3.602 20 O -0.418 6.418 21 C -0.405 4.405 22 C -0.072 4.072 23 C -0.230 4.230 24 C -0.178 4.178 25 F -0.079 7.079 26 S 0.571 5.429 27 C -0.032 4.032 28 C -0.101 4.101 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.217 0.783 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.175 0.825 41 H 0.169 0.831 42 H 0.102 0.898 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.676 -12.018 -0.239 12.137 hybrid contribution -1.496 0.763 -0.275 1.702 sum -3.172 -11.255 -0.514 11.705 Atomic orbital electron populations 1.69617 1.05008 1.25754 1.57555 1.24697 0.95504 0.97560 1.02830 0.86235 0.78693 0.84002 0.77495 1.21786 1.21836 1.20817 1.19204 0.91030 0.83955 1.42887 0.91110 1.42662 1.05664 0.99783 1.89212 1.19129 0.93751 0.85448 0.93909 0.93378 1.21870 1.00980 0.94451 0.99744 1.21455 0.97519 0.96012 1.00593 1.21336 0.99283 0.99141 0.95093 1.21790 0.96016 0.94813 0.98158 0.88445 1.22342 0.85863 0.92401 1.00554 1.48253 1.09081 1.09002 1.67994 1.16364 0.80035 0.87124 0.76646 1.90812 1.78772 1.19052 1.53163 1.24569 0.98798 0.97582 1.19592 1.20319 0.91115 0.99365 0.96407 1.20195 1.02626 0.90550 1.09588 1.22763 1.01491 0.83314 1.10214 1.91539 1.87541 1.35610 1.93187 1.85110 0.99110 0.96107 1.62620 1.22133 0.95388 0.82690 1.03005 1.21044 0.92657 0.94593 1.01777 0.90557 0.93466 0.78279 0.92472 0.91967 0.92599 0.92227 0.91885 0.92135 0.91510 0.90179 0.82467 0.83108 0.89761 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.99 13.06 55.49 0.72 -25.27 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 3 Si 0.90 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.24 -6.10 9.79 -15.06 -0.15 -6.25 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.73 -16.25 4.90 -55.78 -0.27 -16.52 16 10 C 0.19 3.25 2.52 -70.33 -0.18 3.07 16 11 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 12 C -0.13 -2.10 5.29 -27.68 -0.15 -2.24 16 13 C -0.12 -1.46 5.93 -26.98 -0.16 -1.62 16 14 C -0.11 -1.30 4.82 -27.46 -0.13 -1.43 16 15 C -0.09 -1.02 3.34 -90.24 -0.30 -1.32 16 16 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 17 C 0.11 1.36 6.18 -2.63 -0.02 1.34 16 18 N -0.61 -8.89 3.28 -172.86 -0.57 -9.46 16 19 C 0.61 9.73 7.79 -13.00 -0.10 9.63 16 20 O -0.54 -9.68 17.11 5.16 0.09 -9.59 16 21 C -0.28 -4.23 6.37 -36.87 -0.23 -4.46 16 22 C -0.04 -0.51 10.01 -40.45 -0.40 -0.91 16 23 C -0.20 -2.51 10.16 -41.33 -0.42 -2.93 16 24 C -0.04 -0.59 8.10 29.31 0.24 -0.36 16 25 F -0.10 -1.60 17.32 2.25 0.04 -1.56 16 26 S 0.30 4.70 18.42 -107.50 -1.98 2.72 16 27 C 0.09 1.41 3.14 -3.50 -0.01 1.40 16 28 C -0.08 -1.17 2.38 -92.12 -0.22 -1.39 16 29 H 0.08 1.10 8.13 -51.93 -0.42 0.68 16 30 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 31 H 0.38 8.77 5.69 -40.82 -0.23 8.54 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.84 7.89 -51.93 -0.41 0.43 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 40 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 41 H 0.15 1.53 8.06 -52.49 -0.42 1.10 16 42 H 0.08 1.41 6.37 -51.93 -0.33 1.08 16 43 H 0.08 1.31 6.56 -51.89 -0.34 0.97 16 LS Contribution 356.01 15.07 5.36 5.36 Total: -1.00 -29.17 356.01 -9.87 -39.04 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -5.91 Total: 6.74 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.33 Total: -7.84 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.12 Total: -51.25 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -1.98 Total: 2.72 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.17 -9.87 -39.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992931179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.163 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds