Wall clock time and date at job start Tue Mar 31 2020 20:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99957 * 2 1 4 4 H 1.48497 * 109.47228 * 269.99449 * 3 2 1 5 5 H 1.48502 * 109.47164 * 29.99817 * 3 2 1 6 6 H 1.48499 * 109.46922 * 149.99815 * 3 2 1 7 7 C 1.38817 * 119.99824 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99755 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99722 * 179.97438 * 9 7 2 11 11 H 1.09000 * 108.20512 * 37.81310 * 10 9 7 12 12 C 1.51492 * 108.16462 * 280.69235 * 10 9 7 13 13 C 1.52645 * 110.89846 * 191.55529 * 12 10 9 14 14 C 1.52862 * 108.65787 * 59.79438 * 13 12 10 15 15 C 1.51703 * 109.47497 * 295.17857 * 14 13 12 16 16 H 1.08998 * 111.93299 * 289.44406 * 15 14 13 17 17 C 1.55067 * 106.94650 * 166.89512 * 15 14 13 18 18 N 1.47077 * 105.85236 * 273.66854 * 17 15 14 19 19 C 1.34774 * 125.44273 * 160.40112 * 18 17 15 20 20 O 1.21732 * 119.99886 * 355.11184 * 19 18 17 21 21 C 1.46343 * 119.99759 * 175.11356 * 19 18 17 22 22 C 1.36740 * 125.43503 * 185.49233 * 21 19 18 23 23 C 1.37336 * 113.33229 * 179.97438 * 22 21 19 24 24 C 1.34213 * 115.04817 * 359.97438 * 23 22 21 25 25 F 1.35100 * 124.54339 * 180.02562 * 24 23 22 26 26 S 1.70625 * 110.91397 * 359.72300 * 24 23 22 27 27 C 1.47136 * 109.11290 * 340.40204 * 18 17 15 28 28 C 1.49690 * 108.30110 * 155.00217 * 10 9 7 29 29 H 1.09000 * 107.66977 * 280.30935 * 28 10 9 30 30 H 0.97002 * 120.00258 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99965 * 0.02562 * 9 7 2 32 32 H 1.08997 * 109.18912 * 311.92114 * 12 10 9 33 33 H 1.08998 * 109.18907 * 71.19031 * 12 10 9 34 34 H 1.08998 * 109.60619 * 179.55278 * 13 12 10 35 35 H 1.09007 * 109.60349 * 300.04778 * 13 12 10 36 36 H 1.09005 * 109.43913 * 55.10550 * 14 13 12 37 37 H 1.09003 * 109.44220 * 175.03627 * 14 13 12 38 38 H 1.08996 * 110.17486 * 154.57434 * 17 15 14 39 39 H 1.08999 * 110.17169 * 32.75859 * 17 15 14 40 40 H 1.07998 * 123.32924 * 0.02562 * 22 21 19 41 41 H 1.07999 * 122.47809 * 179.97438 * 23 22 21 42 42 H 1.09002 * 109.98010 * 118.85302 * 27 18 17 43 43 H 1.09005 * 109.97706 * 240.10450 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6568 0.0005 11 1 2.9367 -3.5427 0.6354 12 6 2.5255 -3.9323 -1.4139 13 6 3.0442 -5.3617 -1.5473 14 6 1.9142 -6.3273 -1.1904 15 6 1.5442 -6.1550 0.2707 16 1 2.3219 -6.5322 0.9347 17 6 0.1993 -6.8960 0.4868 18 7 -0.8527 -5.9291 0.1381 19 6 -2.1259 -6.2391 -0.1769 20 8 -2.4621 -7.4050 -0.2748 21 6 -3.1042 -5.1741 -0.4012 22 6 -4.4412 -5.3590 -0.6203 23 6 -5.1304 -4.1848 -0.8003 24 6 -4.3841 -3.0715 -0.7309 25 9 -4.8638 -1.8172 -0.8787 26 16 -2.7497 -3.4521 -0.4226 27 6 -0.2929 -4.5693 0.1880 28 6 1.1776 -4.7079 0.6011 29 1 1.2229 -4.5980 1.6846 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0002 32 1 1.6919 -3.7879 -2.1012 33 1 3.3242 -3.2359 -1.6693 34 1 3.3670 -5.5394 -2.5731 35 1 3.8821 -5.5117 -0.8664 36 1 1.0446 -6.1138 -1.8122 37 1 2.2431 -7.3515 -1.3661 38 1 0.1005 -7.1994 1.5290 39 1 0.1408 -7.7668 -0.1662 40 1 -4.9090 -6.3320 -0.6480 41 1 -6.1943 -4.1592 -0.9842 42 1 -0.3614 -4.1020 -0.7944 43 1 -0.8320 -3.9714 0.9230 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992931179.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:59 Heat of formation + Delta-G solvation = -46.897669 kcal Electronic energy + Delta-G solvation = -28005.454304 eV Core-core repulsion = 24091.229359 eV Total energy + Delta-G solvation = -3914.224944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.16021 -41.87129 -40.11513 -38.37894 -36.91328 -35.59875 -33.47376 -32.32299 -30.71148 -30.14133 -28.11467 -26.64041 -25.69450 -24.91753 -22.97588 -22.60960 -21.61760 -20.66152 -19.98624 -19.41230 -18.92563 -17.89968 -17.48388 -17.34228 -17.01257 -16.70441 -16.32888 -16.11041 -15.52842 -15.45939 -15.25261 -15.09490 -14.80679 -14.46009 -14.29873 -14.02261 -13.78075 -13.52425 -13.41792 -13.15009 -13.03189 -12.82766 -12.72233 -12.56756 -12.36719 -12.13131 -12.07507 -11.84807 -11.66870 -11.35601 -11.24017 -11.14424 -10.97096 -10.69647 -10.04488 -9.86076 -9.58522 -8.92928 -7.87701 -5.14462 -0.76887 0.00335 0.61825 1.10184 1.49916 1.50945 1.58114 1.79255 1.99005 2.59628 3.18894 3.24868 3.40188 3.45717 3.65226 3.75562 4.08950 4.11731 4.17579 4.25453 4.27174 4.32679 4.38948 4.50705 4.53780 4.66597 4.71974 4.77642 4.80693 4.85759 4.86056 4.95371 5.04973 5.14147 5.15403 5.21231 5.32007 5.38645 5.45830 5.58667 5.61349 5.74635 6.23311 6.34454 6.87813 7.42223 8.16429 8.39826 9.34557 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008758 B = 0.005665 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.408357 B = 4941.685971 C = 7749.269573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.069 4.069 3 Si 0.960 3.040 4 H -0.294 1.294 5 H -0.301 1.301 6 H -0.271 1.271 7 C -0.232 4.232 8 H 0.075 0.925 9 N -0.742 5.742 10 C 0.187 3.813 11 H 0.048 0.952 12 C -0.124 4.124 13 C -0.108 4.108 14 C -0.108 4.108 15 C -0.075 4.075 16 H 0.131 0.869 17 C 0.106 3.894 18 N -0.607 5.607 19 C 0.607 3.393 20 O -0.560 6.560 21 C -0.290 4.290 22 C -0.027 4.027 23 C -0.175 4.175 24 C -0.057 4.057 25 F -0.110 7.110 26 S 0.254 5.746 27 C 0.101 3.899 28 C -0.079 4.079 29 H 0.079 0.921 30 H 0.247 0.753 31 H 0.376 0.624 32 H 0.033 0.967 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.041 0.959 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.181 0.819 41 H 0.184 0.816 42 H 0.065 0.935 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.039 -14.815 -0.129 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.262 4.262 3 Si 0.790 3.210 4 H -0.221 1.221 5 H -0.228 1.228 6 H -0.196 1.196 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.384 5.384 10 C 0.079 3.921 11 H 0.066 0.934 12 C -0.164 4.164 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.094 4.094 16 H 0.149 0.851 17 C -0.015 4.015 18 N -0.339 5.339 19 C 0.396 3.604 20 O -0.442 6.442 21 C -0.411 4.411 22 C -0.061 4.061 23 C -0.207 4.207 24 C -0.195 4.195 25 F -0.089 7.089 26 S 0.522 5.478 27 C -0.023 4.023 28 C -0.099 4.099 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.210 0.790 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.060 0.940 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.198 0.802 41 H 0.202 0.798 42 H 0.083 0.917 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.858 -14.350 0.025 14.376 hybrid contribution -1.734 1.421 -0.380 2.274 sum -2.592 -12.929 -0.355 13.192 Atomic orbital electron populations 1.69764 1.06114 1.25549 1.59703 1.25354 0.96233 1.00312 1.04280 0.85341 0.77905 0.80676 0.77032 1.22118 1.22806 1.19596 1.19534 0.91359 0.85126 1.40348 0.90749 1.42899 1.05718 1.00819 1.89012 1.19322 0.93736 0.84355 0.94712 0.93446 1.21725 0.99575 0.97077 0.98048 1.21391 0.98204 0.93088 1.01932 1.21334 0.98141 1.00476 0.94610 1.21838 0.96589 0.92091 0.98871 0.85107 1.22558 0.85255 0.92060 1.01602 1.48291 1.09252 1.09127 1.67251 1.16489 0.80500 0.86956 0.76437 1.90793 1.79207 1.19681 1.54523 1.24595 0.99540 0.96462 1.20514 1.20657 0.90348 1.00429 0.94632 1.20508 1.03943 0.89288 1.06948 1.22886 1.01164 0.83606 1.11823 1.91508 1.87515 1.36408 1.93473 1.85314 1.00755 0.97665 1.64080 1.21932 0.95933 0.82896 1.01567 1.20969 0.91503 0.95880 1.01584 0.90224 0.94395 0.78966 0.94778 0.93668 0.91489 0.90314 0.93992 0.89187 0.89978 0.89562 0.80189 0.79839 0.91664 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.50 13.06 21.65 0.28 -55.22 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 3 Si 0.96 44.75 29.55 68.60 2.03 46.77 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.23 -11.95 9.79 84.03 0.82 -11.13 16 8 H 0.07 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.74 -33.76 4.90 -330.39 -1.62 -35.38 16 10 C 0.19 6.41 2.52 43.44 0.11 6.52 16 11 H 0.05 1.65 8.07 -2.39 -0.02 1.63 16 12 C -0.12 -3.95 5.29 29.98 0.16 -3.80 16 13 C -0.11 -2.40 5.93 30.43 0.18 -2.22 16 14 C -0.11 -2.21 4.82 30.12 0.15 -2.06 16 15 C -0.07 -1.50 3.34 -10.55 -0.04 -1.54 16 16 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 17 C 0.11 2.35 6.18 86.98 0.54 2.89 16 18 N -0.61 -17.24 3.28 -819.00 -2.69 -19.93 16 19 C 0.61 18.99 7.79 86.35 0.67 19.66 16 20 O -0.56 -19.43 17.11 -4.45 -0.08 -19.51 16 21 C -0.29 -8.56 6.37 24.03 0.15 -8.41 16 22 C -0.03 -0.67 10.01 21.71 0.22 -0.45 16 23 C -0.17 -4.15 10.16 21.14 0.21 -3.94 16 24 C -0.06 -1.72 8.10 66.90 0.54 -1.17 16 25 F -0.11 -3.60 17.32 44.97 0.78 -2.82 16 26 S 0.25 8.25 18.42 -56.49 -1.04 7.21 16 27 C 0.10 3.14 3.14 86.38 0.27 3.41 16 28 C -0.08 -2.22 2.38 -11.76 -0.03 -2.25 16 29 H 0.08 2.18 8.13 -2.39 -0.02 2.17 16 30 H 0.25 14.17 8.31 -92.71 -0.77 13.39 16 31 H 0.38 18.00 5.69 -92.71 -0.53 17.47 16 32 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 36 H 0.04 1.05 7.89 -2.38 -0.02 1.03 16 37 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.09 1.86 7.76 -2.39 -0.02 1.84 16 40 H 0.18 3.63 8.06 -2.91 -0.02 3.60 16 41 H 0.18 3.13 8.06 -2.91 -0.02 3.11 16 42 H 0.07 2.30 6.37 -2.39 -0.02 2.29 16 43 H 0.07 2.29 6.56 -2.41 -0.02 2.27 16 Total: -1.00 -64.27 356.01 2.60 -61.66 By element: Atomic # 1 Polarization: 24.48 SS G_CDS: 0.51 Total: 24.99 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: 4.43 Total: -7.78 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.03 Total: -110.53 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.08 Total: -19.51 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: 8.25 SS G_CDS: -1.04 Total: 7.21 kcal Total: -64.27 2.60 -61.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992931179.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.765 kcal (2) G-P(sol) polarization free energy of solvation -64.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds