Wall clock time and date at job start Tue Mar 31 2020 20:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99799 * 2 1 4 4 H 1.48492 * 109.47352 * 89.99661 * 3 2 1 5 5 H 1.48506 * 109.46680 * 210.00039 * 3 2 1 6 6 H 1.48504 * 109.46948 * 329.99647 * 3 2 1 7 7 C 1.38812 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99632 * 180.02562 * 7 2 1 9 9 N 1.36930 * 120.00208 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99978 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.92731 * 36.15570 * 10 9 7 12 12 C 1.53843 * 109.94075 * 274.99889 * 10 9 7 13 13 C 1.52521 * 111.65286 * 183.41466 * 12 10 9 14 14 C 1.53815 * 111.70952 * 54.04755 * 13 12 10 15 15 C 1.51619 * 107.02969 * 302.46396 * 14 13 12 16 16 H 1.08999 * 110.51133 * 304.77178 * 15 14 13 17 17 C 1.53074 * 116.66523 * 176.22015 * 15 14 13 18 18 N 1.48663 * 103.44554 * 204.13495 * 17 15 14 19 19 C 1.34777 * 125.78126 * 204.32954 * 18 17 15 20 20 O 1.21725 * 120.00117 * 354.93326 * 19 18 17 21 21 C 1.46338 * 119.99615 * 174.93000 * 19 18 17 22 22 C 1.36733 * 125.43808 * 185.06542 * 21 19 18 23 23 C 1.37342 * 113.33621 * 179.97438 * 22 21 19 24 24 C 1.34207 * 115.04124 * 0.02562 * 23 22 21 25 25 F 1.35107 * 124.53637 * 179.97438 * 24 23 22 26 26 S 1.70606 * 110.92214 * 359.72257 * 24 23 22 27 27 C 1.48239 * 108.43118 * 24.37530 * 18 17 15 28 28 C 1.51434 * 109.94135 * 157.40532 * 10 9 7 29 29 H 1.09001 * 109.86877 * 65.21136 * 28 10 9 30 30 H 0.96998 * 119.99730 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00159 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.04230 * 303.97493 * 12 10 9 33 33 H 1.09002 * 109.04541 * 62.92244 * 12 10 9 34 34 H 1.08999 * 109.03994 * 174.62216 * 13 12 10 35 35 H 1.09004 * 109.03253 * 293.48131 * 13 12 10 36 36 H 1.08999 * 109.93958 * 61.84038 * 14 13 12 37 37 H 1.08996 * 109.94521 * 183.08249 * 14 13 12 38 38 H 1.09004 * 110.62317 * 322.62241 * 17 15 14 39 39 H 1.09001 * 110.62563 * 85.64270 * 17 15 14 40 40 H 1.08004 * 123.33017 * 0.02772 * 22 21 19 41 41 H 1.08003 * 122.47679 * 179.97438 * 23 22 21 42 42 H 1.09009 * 110.17330 * 244.08889 * 27 18 17 43 43 H 1.09000 * 110.23869 * 122.31951 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4000 5 1 3.5478 1.4401 -0.7001 6 1 1.4476 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0017 11 1 2.9600 -3.5645 0.6069 12 6 2.4308 -4.0488 -1.4386 13 6 3.1225 -5.4071 -1.4910 14 6 2.2863 -6.4985 -0.8016 15 6 2.0542 -6.0445 0.6263 16 1 3.0033 -5.8335 1.1190 17 6 1.1613 -6.9351 1.4938 18 7 0.6454 -6.0025 2.5303 19 6 0.2096 -6.3508 3.7571 20 8 0.1309 -7.5261 4.0641 21 6 -0.1691 -5.3160 4.7201 22 6 -0.5304 -5.5369 6.0202 23 6 -0.8369 -4.3853 6.7029 24 6 -0.7314 -3.2552 5.9867 25 9 -0.9867 -2.0180 6.4659 26 16 -0.2250 -3.5895 4.3922 27 6 0.6906 -4.6247 1.9852 28 6 1.1778 -4.7610 0.5484 29 1 0.3341 -4.9280 -0.1213 30 1 -0.4850 0.8401 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 1.5241 -4.0878 -2.0424 33 1 3.1001 -3.2937 -1.8509 34 1 3.2807 -5.6856 -2.5329 35 1 4.0896 -5.3329 -0.9935 36 1 1.3316 -6.6149 -1.3144 37 1 2.8302 -7.4430 -0.8076 38 1 0.3413 -7.3464 0.9050 39 1 1.7447 -7.7337 1.9520 40 1 -0.5699 -6.5197 6.4664 41 1 -1.1412 -4.3890 7.7392 42 1 1.3863 -4.0149 2.5618 43 1 -0.3039 -4.1789 2.0041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992931180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:02 Heat of formation + Delta-G solvation = -48.550948 kcal Electronic energy + Delta-G solvation = -27466.997910 eV Core-core repulsion = 23552.701274 eV Total energy + Delta-G solvation = -3914.296636 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -50.18418 -41.67365 -40.09482 -38.39785 -36.89887 -35.64125 -33.29881 -32.12898 -30.70462 -30.15813 -28.09236 -26.69655 -25.64445 -24.77874 -22.53730 -22.13049 -21.44964 -21.05353 -20.54588 -19.41562 -19.08572 -17.87271 -17.60930 -17.17962 -16.85632 -16.70212 -16.34042 -15.76138 -15.62397 -15.54559 -15.34467 -15.20502 -14.76936 -14.48123 -14.01461 -13.98847 -13.73812 -13.47983 -13.38129 -13.34625 -13.04934 -12.90915 -12.80701 -12.59804 -12.17510 -12.02252 -11.96057 -11.74246 -11.73672 -11.46365 -11.30495 -11.22664 -10.87967 -10.79158 -10.08040 -9.87698 -9.62480 -8.93534 -7.88997 -5.15461 -0.78656 -0.03403 0.57281 1.09755 1.49047 1.50114 1.57157 1.72214 1.99223 2.59101 3.13744 3.22279 3.43545 3.49721 3.65507 3.72929 4.06913 4.15432 4.19705 4.23821 4.25985 4.40626 4.41708 4.55623 4.62811 4.65435 4.68138 4.71518 4.72626 4.78496 4.83673 4.88472 5.07650 5.10350 5.13725 5.30209 5.31990 5.39220 5.44366 5.53203 5.58576 5.71946 6.24027 6.33253 6.87029 7.40906 8.16260 8.39341 9.33917 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.008329 B = 0.005147 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.973527 B = 5438.890465 C = 8520.743175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.957 3.043 4 H -0.291 1.291 5 H -0.271 1.271 6 H -0.300 1.300 7 C -0.228 4.228 8 H 0.073 0.927 9 N -0.732 5.732 10 C 0.192 3.808 11 H 0.046 0.954 12 C -0.129 4.129 13 C -0.108 4.108 14 C -0.094 4.094 15 C -0.091 4.091 16 H 0.088 0.912 17 C 0.120 3.880 18 N -0.617 5.617 19 C 0.607 3.393 20 O -0.562 6.562 21 C -0.284 4.284 22 C -0.027 4.027 23 C -0.174 4.174 24 C -0.055 4.055 25 F -0.109 7.109 26 S 0.249 5.751 27 C 0.107 3.893 28 C -0.096 4.096 29 H 0.083 0.917 30 H 0.248 0.752 31 H 0.374 0.626 32 H 0.045 0.955 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.179 0.821 41 H 0.183 0.817 42 H 0.073 0.927 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.103 -14.899 6.376 16.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.261 4.261 3 Si 0.787 3.213 4 H -0.219 1.219 5 H -0.196 1.196 6 H -0.227 1.227 7 C -0.360 4.360 8 H 0.091 0.909 9 N -0.371 5.371 10 C 0.083 3.917 11 H 0.064 0.936 12 C -0.170 4.170 13 C -0.147 4.147 14 C -0.132 4.132 15 C -0.111 4.111 16 H 0.107 0.893 17 C 0.000 4.000 18 N -0.349 5.349 19 C 0.396 3.604 20 O -0.444 6.444 21 C -0.404 4.404 22 C -0.061 4.061 23 C -0.206 4.206 24 C -0.193 4.193 25 F -0.088 7.088 26 S 0.516 5.484 27 C -0.017 4.017 28 C -0.116 4.116 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.206 0.794 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.106 0.894 40 H 0.197 0.803 41 H 0.201 0.799 42 H 0.091 0.909 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.470 -14.409 5.370 15.575 hybrid contribution -0.615 1.262 1.375 1.965 sum 1.855 -13.147 6.746 14.893 Atomic orbital electron populations 1.69782 1.06276 1.25643 1.59935 1.25341 0.96126 1.00340 1.04335 0.85382 0.77930 0.80750 0.77197 1.21886 1.19616 1.22731 1.19517 0.91253 0.85149 1.40124 0.90871 1.42568 1.05386 1.00689 1.88472 1.20155 0.93392 0.83768 0.94376 0.93604 1.22145 0.99816 0.96822 0.98181 1.21485 0.98786 0.93178 1.01214 1.21313 1.01146 0.98701 0.92010 1.22108 0.98041 0.93597 0.97304 0.89346 1.22153 0.97565 0.92129 0.88184 1.49091 1.62670 1.09663 1.13473 1.16516 0.76772 0.86901 0.80188 1.90800 1.56699 1.18611 1.78302 1.24502 1.19112 0.96301 1.00523 1.20666 0.94136 1.00711 0.90541 1.20506 1.06626 0.89353 1.04162 1.22826 1.10818 0.84039 1.01582 1.91514 1.91924 1.37922 1.87444 1.84948 1.60452 0.98882 1.04109 1.21734 1.01671 0.82222 0.96077 1.21969 0.99106 0.97035 0.93444 0.89866 0.94304 0.79416 0.93583 0.94131 0.90952 0.91834 0.91006 0.89055 0.89839 0.89352 0.80333 0.79926 0.90912 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.39 13.06 21.65 0.28 -56.10 16 2 C -0.07 -3.76 5.50 84.86 0.47 -3.30 16 3 Si 0.96 44.72 29.55 68.60 2.03 46.75 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 7 C -0.23 -11.75 9.95 84.03 0.84 -10.92 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -33.04 5.07 -324.02 -1.64 -34.68 16 10 C 0.19 6.51 2.51 44.76 0.11 6.62 16 11 H 0.05 1.62 8.00 -2.39 -0.02 1.60 16 12 C -0.13 -3.90 5.45 30.72 0.17 -3.73 16 13 C -0.11 -2.26 5.83 30.71 0.18 -2.08 16 14 C -0.09 -1.62 5.71 30.42 0.17 -1.44 16 15 C -0.09 -1.90 2.50 -10.32 -0.03 -1.93 16 16 H 0.09 1.88 8.02 -2.39 -0.02 1.86 16 17 C 0.12 2.63 6.55 85.99 0.56 3.19 16 18 N -0.62 -16.67 3.38 -817.92 -2.77 -19.44 16 19 C 0.61 17.98 7.81 86.35 0.67 18.65 16 20 O -0.56 -18.90 17.18 -4.43 -0.08 -18.97 16 21 C -0.28 -7.64 6.38 24.03 0.15 -7.48 16 22 C -0.03 -0.61 10.01 21.71 0.22 -0.39 16 23 C -0.17 -3.67 10.16 21.14 0.21 -3.45 16 24 C -0.06 -1.45 8.10 66.90 0.54 -0.90 16 25 F -0.11 -3.10 17.32 44.97 0.78 -2.32 16 26 S 0.25 7.02 18.48 -56.49 -1.04 5.98 16 27 C 0.11 3.08 4.76 85.82 0.41 3.49 16 28 C -0.10 -2.64 1.81 -10.63 -0.02 -2.66 16 29 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 30 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 31 H 0.37 18.32 7.79 -92.71 -0.72 17.59 16 32 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 1.22 7.98 -2.39 -0.02 1.20 16 37 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.09 1.83 8.12 -2.39 -0.02 1.81 16 40 H 0.18 3.29 8.06 -2.91 -0.02 3.27 16 41 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 42 H 0.07 2.27 6.93 -2.38 -0.02 2.26 16 43 H 0.07 2.19 6.93 -2.39 -0.02 2.17 16 Total: -1.00 -63.39 361.17 2.54 -60.85 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.31 Total: 24.29 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: 4.66 Total: -6.34 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -4.13 Total: -110.23 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.08 Total: -18.97 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.78 Total: -2.32 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -1.04 Total: 5.98 kcal Total: -63.39 2.54 -60.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992931180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.298 kcal (2) G-P(sol) polarization free energy of solvation -63.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds