Wall clock time and date at job start Tue Mar 31 2020 21:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35463 * 126.43138 * 2 1 4 4 Cl 1.73599 * 127.23962 * 359.97438 * 3 2 1 5 5 C 1.41549 * 105.52392 * 180.02562 * 3 2 1 6 6 C 1.47661 * 126.46437 * 179.97438 * 5 3 2 7 7 O 1.21576 * 119.99733 * 0.02562 * 6 5 3 8 8 N 1.34772 * 120.00232 * 180.02562 * 6 5 3 9 9 C 1.46502 * 120.00569 * 180.02562 * 8 6 5 10 10 C 1.50694 * 109.47861 * 179.97438 * 9 8 6 11 11 C 1.29457 * 117.69284 * 94.99351 * 10 9 8 12 12 C 1.50319 * 123.65117 * 180.57773 * 11 10 9 13 13 N 1.47010 * 109.16396 * 349.28755 * 12 11 10 14 14 C 1.36939 * 121.37262 * 222.96294 * 13 12 11 15 15 H 1.08006 * 119.99321 * 155.96770 * 14 13 12 16 16 C 1.38810 * 120.00352 * 335.97266 * 14 13 12 17 17 N 1.31617 * 119.99875 * 344.52484 * 16 14 13 18 18 Si 1.86807 * 119.99988 * 164.52017 * 16 14 13 19 19 H 1.48495 * 109.46984 * 60.00138 * 18 16 14 20 20 H 1.48500 * 109.46904 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47058 * 299.99897 * 18 16 14 22 22 C 1.47338 * 117.25069 * 42.95114 * 13 12 11 23 23 C 1.49964 * 117.69058 * 275.22495 * 10 9 8 24 24 N 1.31830 * 107.07436 * 0.24040 * 5 3 2 25 25 N 1.28469 * 110.13394 * 359.58767 * 24 5 3 26 26 C 1.46508 * 124.93270 * 180.19915 * 25 24 5 27 27 H 1.08999 * 109.46826 * 89.98315 * 1 2 3 28 28 H 1.08998 * 109.47164 * 209.98132 * 1 2 3 29 29 H 1.08997 * 109.47256 * 329.98031 * 1 2 3 30 30 H 0.96998 * 120.00142 * 359.97438 * 8 6 5 31 31 H 1.09006 * 109.46917 * 59.99057 * 9 8 6 32 32 H 1.09004 * 109.46730 * 300.00357 * 9 8 6 33 33 H 1.08003 * 118.17487 * 0.86945 * 11 10 9 34 34 H 1.09004 * 109.52258 * 109.19397 * 12 11 10 35 35 H 1.08999 * 109.52598 * 229.38084 * 12 11 10 36 36 H 0.97002 * 119.99820 * 180.02562 * 17 16 14 37 37 H 1.09002 * 109.78070 * 57.80258 * 22 13 12 38 38 H 1.09002 * 109.77840 * 178.61854 * 22 13 12 39 39 H 1.08995 * 109.43781 * 40.81758 * 23 10 9 40 40 H 1.09004 * 109.12988 * 281.42366 * 23 10 9 41 41 H 1.08994 * 109.47206 * 270.25668 * 26 25 24 42 42 H 1.08998 * 109.46430 * 30.25660 * 26 25 24 43 43 H 1.09002 * 109.46686 * 150.25171 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3115 1.0899 0.0000 4 17 1.8234 2.7559 -0.0006 5 6 3.6338 0.5848 -0.0006 6 6 4.8773 1.3809 -0.0014 7 8 4.8215 2.5954 -0.0011 8 7 6.0742 0.7613 -0.0024 9 6 7.3081 1.5512 -0.0026 10 6 8.4972 0.6256 -0.0032 11 6 9.0329 0.3350 -1.1454 12 6 10.2132 -0.5824 -1.3026 13 7 10.7868 -0.8621 0.0218 14 6 12.1408 -0.8628 0.2266 15 1 12.5375 -0.6818 1.2147 16 6 13.0033 -1.0961 -0.8356 17 7 12.5432 -1.6110 -1.9561 18 14 14.8172 -0.6792 -0.6749 19 1 15.4068 -1.4578 0.4436 20 1 15.5174 -1.0203 -1.9393 21 1 14.9691 0.7725 -0.4017 22 6 9.8447 -1.1412 1.1197 23 6 8.9733 0.1018 1.3189 24 7 3.5456 -0.7306 -0.0062 25 7 2.3126 -1.0912 -0.0004 26 6 1.8446 -2.4795 0.0001 27 1 -0.3633 0.0003 -1.0277 28 1 -0.3633 -0.8901 0.5135 29 1 -0.3633 0.8898 0.5141 30 1 6.1187 -0.2076 -0.0023 31 1 7.3374 2.1794 0.8877 32 1 7.3365 2.1804 -0.8922 33 1 8.6111 0.7802 -2.0344 34 1 9.8903 -1.5156 -1.7641 35 1 10.9646 -0.1049 -1.9314 36 1 13.1460 -1.7744 -2.6983 37 1 9.2173 -1.9938 0.8596 38 1 10.3974 -1.3546 2.0347 39 1 8.1138 -0.1559 1.9377 40 1 9.5564 0.8743 1.8202 41 1 1.7276 -2.8239 -1.0274 42 1 2.5723 -3.1079 0.5134 43 1 0.8856 -2.5394 0.5148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001215552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:26 Heat of formation + Delta-G solvation = 77.132012 kcal Electronic energy + Delta-G solvation = -26273.584703 eV Core-core repulsion = 22382.614345 eV Total energy + Delta-G solvation = -3890.970358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.05110 -39.37919 -37.68284 -36.67493 -34.87898 -33.98464 -32.92746 -32.73278 -30.86430 -29.71349 -28.18699 -27.57620 -26.55440 -24.38295 -22.99220 -22.58961 -21.34499 -21.03530 -19.89652 -17.84776 -17.54208 -16.90870 -16.88024 -15.76338 -15.60392 -15.21264 -15.08766 -14.81055 -14.27685 -13.90174 -13.82979 -13.73439 -13.61074 -13.38667 -13.29246 -13.11491 -12.79396 -12.74338 -12.21249 -12.03469 -11.99646 -11.67334 -11.53418 -11.31886 -10.89109 -10.83240 -10.71949 -10.38986 -10.31685 -10.01921 -9.81588 -9.57382 -9.49911 -9.00231 -8.84623 -8.66567 -8.03131 -6.73542 -5.78841 -3.17545 1.27000 1.56105 1.64043 2.39087 2.64468 3.34254 3.39934 3.45497 3.47064 3.51316 4.02161 4.11477 4.45106 4.50401 4.56111 4.63090 4.86970 4.99865 5.02847 5.19861 5.26849 5.32659 5.38263 5.42922 5.59730 5.71558 5.87312 5.99531 6.10557 6.20892 6.25507 6.37383 6.49694 6.57209 6.75690 6.89469 7.19538 7.28087 7.33630 7.39696 7.70720 7.74647 7.84255 8.27545 8.39108 9.20441 9.83253 10.41482 11.31648 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.002235 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.345898 B =12525.182546 C =13215.152226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.023 3.977 3 C -0.104 4.104 4 Cl -0.009 7.009 5 C 0.004 3.996 6 C 0.596 3.404 7 O -0.523 6.523 8 N -0.706 5.706 9 C 0.158 3.842 10 C -0.165 4.165 11 C -0.124 4.124 12 C 0.194 3.806 13 N -0.595 5.595 14 C -0.246 4.246 15 H 0.068 0.932 16 C -0.001 4.001 17 N -0.910 5.910 18 Si 0.905 3.095 19 H -0.283 1.283 20 H -0.291 1.291 21 H -0.284 1.284 22 C 0.144 3.856 23 C -0.090 4.090 24 N -0.244 5.244 25 N -0.278 5.278 26 C 0.086 3.914 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.407 0.593 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.095 0.905 34 H 0.041 0.959 35 H 0.093 0.907 36 H 0.254 0.746 37 H 0.023 0.977 38 H 0.057 0.943 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.349 -0.328 3.542 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.142 4.142 4 Cl 0.019 6.981 5 C -0.157 4.157 6 C 0.379 3.621 7 O -0.397 6.397 8 N -0.357 5.357 9 C 0.036 3.964 10 C -0.166 4.166 11 C -0.145 4.145 12 C 0.069 3.931 13 N -0.318 5.318 14 C -0.375 4.375 15 H 0.086 0.914 16 C -0.199 4.199 17 N -0.556 5.556 18 Si 0.735 3.265 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.211 1.211 22 C 0.018 3.982 23 C -0.129 4.129 24 N -0.080 5.080 25 N -0.067 5.067 26 C -0.054 4.054 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.108 0.892 30 H 0.242 0.758 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -26.666 -0.444 3.396 26.885 hybrid contribution 0.418 0.484 -0.089 0.646 sum -26.249 0.040 3.307 26.456 Atomic orbital electron populations 1.20404 0.85790 1.04295 1.03799 1.21108 0.95443 0.85782 1.07906 1.20507 0.92035 0.87717 1.13897 1.98355 1.90792 1.11791 1.97112 1.21916 0.94362 0.89435 1.09996 1.16798 0.81562 0.86460 0.77308 1.90829 1.86540 1.12417 1.49925 1.46034 1.04887 1.11142 1.73630 1.20512 0.81033 0.92797 1.02089 1.20474 0.97636 1.02259 0.96239 1.23288 0.98098 0.96951 0.96118 1.19758 0.90805 0.94315 0.88185 1.44120 1.01802 1.81156 1.04755 1.19142 0.81003 1.41896 0.95476 0.91410 1.24987 0.98062 0.99496 0.97383 1.69999 1.34554 1.46058 1.04941 0.86319 0.84933 0.78419 0.76811 1.20941 1.21644 1.21058 1.20950 0.91692 0.93115 0.92464 1.20755 0.98687 0.99832 0.93660 1.73676 1.01792 1.13748 1.18751 1.45295 1.02608 1.07462 1.51312 1.22262 1.01875 0.76333 1.04927 0.89774 0.90617 0.89235 0.75779 0.91309 0.91375 0.88739 0.94136 0.88877 0.93561 0.95928 0.92468 0.92823 0.91738 0.89233 0.87908 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 9.99 36.01 0.36 -0.04 16 2 C 0.02 0.21 6.94 -81.90 -0.57 -0.36 16 3 C -0.10 -1.29 6.79 -39.31 -0.27 -1.56 16 4 Cl -0.01 -0.11 27.92 -51.86 -1.45 -1.56 16 5 C 0.00 0.06 7.13 -82.76 -0.59 -0.53 16 6 C 0.60 9.47 7.82 -12.41 -0.10 9.37 16 7 O -0.52 -9.56 15.87 5.30 0.08 -9.48 16 8 N -0.71 -10.55 5.55 -62.49 -0.35 -10.90 16 9 C 0.16 2.50 5.66 -5.20 -0.03 2.47 16 10 C -0.17 -2.92 5.23 -101.00 -0.53 -3.45 16 11 C -0.12 -2.40 9.47 -35.78 -0.34 -2.74 16 12 C 0.19 4.63 5.23 -5.10 -0.03 4.60 16 13 N -0.60 -14.93 3.01 -173.67 -0.52 -15.45 16 14 C -0.25 -6.75 9.71 -15.06 -0.15 -6.89 16 15 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 16 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 17 N -0.91 -26.24 11.08 55.49 0.61 -25.62 16 18 Si 0.91 21.79 29.58 -169.99 -5.03 16.76 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 C 0.14 3.00 6.58 -3.53 -0.02 2.98 16 23 C -0.09 -1.61 5.94 -28.18 -0.17 -1.77 16 24 N -0.24 -3.00 11.66 33.42 0.39 -2.61 16 25 N -0.28 -2.50 3.72 -63.68 -0.24 -2.74 16 26 C 0.09 0.33 11.12 59.85 0.67 1.00 16 27 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.17 7.02 -51.93 -0.36 -0.19 16 29 H 0.09 0.42 8.03 -51.93 -0.42 0.00 16 30 H 0.41 5.77 8.18 -40.82 -0.33 5.43 16 31 H 0.07 1.09 8.11 -51.93 -0.42 0.67 16 32 H 0.07 1.10 7.78 -51.93 -0.40 0.69 16 33 H 0.09 1.66 7.73 -52.48 -0.41 1.26 16 34 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 2.47 6.41 -51.93 -0.33 2.13 16 36 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 1.16 7.96 -51.93 -0.41 0.74 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.10 0.10 6.98 -51.93 -0.36 -0.26 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -33.59 373.72 -8.67 -42.26 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -5.96 Total: 0.77 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -1.84 Total: 2.94 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.10 Total: -57.32 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.08 Total: -9.48 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.03 Total: 16.76 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.45 Total: -1.56 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.59 -8.67 -42.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001215552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.389 kcal (2) G-P(sol) polarization free energy of solvation -33.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds