Wall clock time and date at job start Tue Mar 31 2020 20:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 120.00131 * 2 1 4 4 H 1.48500 * 109.47045 * 240.00030 * 3 2 1 5 5 H 1.48500 * 109.46956 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46977 * 119.99823 * 3 2 1 7 7 C 1.38811 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99909 * 197.36248 * 7 2 1 9 9 N 1.36943 * 119.99821 * 17.36060 * 7 2 1 10 10 C 1.46927 * 120.62873 * 207.66792 * 9 7 2 11 11 C 1.53190 * 108.77154 * 233.63286 * 10 9 7 12 12 C 1.53041 * 109.31438 * 305.36094 * 11 10 9 13 13 C 1.53037 * 109.53506 * 61.37118 * 12 11 10 14 14 H 1.09007 * 109.52547 * 58.59807 * 13 12 11 15 15 N 1.46496 * 109.50225 * 178.68348 * 13 12 11 16 16 C 1.34772 * 120.00569 * 204.56604 * 15 13 12 17 17 O 1.21576 * 119.99885 * 0.26571 * 16 15 13 18 18 C 1.47662 * 120.00310 * 180.27476 * 16 15 13 19 19 N 1.31821 * 126.46071 * 0.02562 * 18 16 15 20 20 N 1.28475 * 110.13719 * 180.02562 * 19 18 16 21 21 H 0.97004 * 124.93115 * 179.97438 * 20 19 18 22 22 C 1.35639 * 110.13187 * 359.97438 * 20 19 18 23 23 C 1.50696 * 126.43715 * 179.97438 * 22 20 19 24 24 C 1.53002 * 117.49589 * 8.77883 * 23 22 20 25 25 C 1.52995 * 117.49934 * 300.11928 * 23 22 20 26 26 C 1.35467 * 107.12713 * 359.72866 * 22 20 19 27 27 Cl 1.73604 * 127.23531 * 180.25841 * 26 22 20 28 28 C 1.46926 * 120.63047 * 27.69176 * 9 7 2 29 29 H 0.97005 * 119.99705 * 0.02562 * 1 2 3 30 30 H 1.08998 * 109.58421 * 353.41811 * 10 9 7 31 31 H 1.08999 * 109.58680 * 113.70377 * 10 9 7 32 32 H 1.09000 * 109.50215 * 65.31738 * 11 10 9 33 33 H 1.09008 * 109.49914 * 185.41788 * 11 10 9 34 34 H 1.08995 * 109.46347 * 301.35006 * 12 11 10 35 35 H 1.09002 * 109.46241 * 181.38837 * 12 11 10 36 36 H 0.97007 * 119.99677 * 24.83234 * 15 13 12 37 37 H 1.09003 * 115.55141 * 154.44231 * 23 22 20 38 38 H 1.08998 * 117.50218 * 359.97438 * 24 23 22 39 39 H 1.09004 * 117.50058 * 145.02153 * 24 23 22 40 40 H 1.09006 * 117.49688 * 214.97605 * 25 23 22 41 41 H 1.09002 * 117.50347 * 359.97348 * 25 23 22 42 42 H 1.08998 * 109.58758 * 6.58338 * 28 9 7 43 43 H 1.08996 * 109.58415 * 246.15118 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6963 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2797 9 7 1.3723 -2.3612 -0.3528 10 6 1.8195 -3.6547 0.1817 11 6 2.0752 -4.6098 -0.9884 12 6 0.8197 -4.6901 -1.8599 13 6 0.5016 -3.3050 -2.4278 14 1 1.3499 -2.9467 -3.0110 15 7 -0.6820 -3.3888 -3.2871 16 6 -0.8727 -2.4782 -4.2622 17 8 -0.0600 -1.5901 -4.4319 18 6 -2.0687 -2.5592 -5.1244 19 7 -3.0261 -3.4625 -5.0531 20 7 -3.9146 -3.2374 -5.9534 21 1 -4.7120 -3.7718 -6.0927 22 6 -3.5755 -2.1439 -6.6807 23 6 -4.3556 -1.5546 -7.8276 24 6 -5.7545 -2.1149 -8.0921 25 6 -4.6038 -2.4468 -9.0454 26 6 -2.4067 -1.6777 -6.1790 27 17 -1.5095 -0.2932 -6.7193 28 6 0.2280 -2.3350 -1.2740 29 1 -0.4850 0.8401 -0.0004 30 1 2.7400 -3.5171 0.7489 31 1 1.0481 -4.0679 0.8315 32 1 2.9090 -4.2395 -1.5848 33 1 2.3146 -5.6011 -0.6033 34 1 -0.0194 -5.0368 -1.2569 35 1 0.9906 -5.3880 -2.6796 36 1 -1.3304 -4.0975 -3.1517 37 1 -4.1972 -0.4911 -8.0066 38 1 -6.1105 -2.9099 -7.4369 39 1 -6.5164 -1.4201 -8.4457 40 1 -4.6091 -1.9702 -10.0257 41 1 -4.2026 -3.4599 -9.0174 42 1 0.0985 -1.3267 -1.6673 43 1 -0.6741 -2.6418 -0.7449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007781989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:23 Heat of formation + Delta-G solvation = 79.589901 kcal Electronic energy + Delta-G solvation = -27046.734630 eV Core-core repulsion = 23155.870854 eV Total energy + Delta-G solvation = -3890.863776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.94539 -39.18379 -37.65453 -37.13351 -36.40477 -34.03045 -32.63810 -31.86341 -30.76631 -29.93791 -28.69420 -25.18870 -24.51969 -23.60848 -22.91981 -22.09895 -21.41815 -21.27247 -19.70345 -19.08642 -18.17005 -16.77236 -16.68302 -16.28632 -15.92302 -15.35468 -14.83701 -14.79224 -14.31825 -14.04880 -13.91460 -13.62353 -13.31646 -12.93366 -12.81951 -12.31779 -12.23892 -12.14239 -12.06249 -11.81072 -11.56466 -11.36583 -11.03674 -10.95024 -10.70567 -10.63325 -10.59507 -10.40205 -10.19577 -9.95915 -9.86071 -9.50647 -9.45198 -9.40645 -8.79978 -8.43865 -8.34426 -6.57944 -5.67435 -3.10647 1.38099 1.71967 1.97881 2.76158 3.33953 3.44636 3.50117 3.55385 3.57918 3.69511 3.99968 4.20883 4.37186 4.46990 4.60845 4.61912 5.05519 5.07718 5.25184 5.35819 5.43464 5.48023 5.49870 5.57577 5.61694 5.70246 5.75010 5.84930 6.15531 6.22585 6.40445 6.48600 6.56724 6.60826 6.77391 6.84085 7.00748 7.03563 7.37360 7.51399 7.81425 7.90880 8.04187 8.55801 8.68332 9.30865 9.95114 10.49934 11.40417 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014161 B = 0.003295 C = 0.002860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1976.725096 B = 8494.846523 C = 9787.984963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.007 3.993 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.142 3.858 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.117 3.883 14 H 0.084 0.916 15 N -0.705 5.705 16 C 0.592 3.408 17 O -0.506 6.506 18 C 0.018 3.982 19 N -0.244 5.244 20 N -0.378 5.378 21 H 0.447 0.553 22 C 0.056 3.944 23 C -0.089 4.089 24 C -0.174 4.174 25 C -0.163 4.163 26 C -0.094 4.094 27 Cl -0.003 7.003 28 C 0.167 3.833 29 H 0.254 0.746 30 H 0.055 0.945 31 H 0.018 0.982 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.398 0.602 37 H 0.135 0.865 38 H 0.092 0.908 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 -9.427 -17.277 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.192 4.192 3 Si 0.731 3.269 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.311 5.311 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.012 3.988 14 H 0.102 0.898 15 N -0.356 5.356 16 C 0.374 3.626 17 O -0.378 6.378 18 C -0.145 4.145 19 N -0.079 5.079 20 N -0.093 5.093 21 H 0.293 0.707 22 C -0.070 4.070 23 C -0.109 4.109 24 C -0.212 4.212 25 C -0.201 4.201 26 C -0.131 4.131 27 Cl 0.026 6.974 28 C 0.040 3.960 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.231 0.769 37 H 0.153 0.847 38 H 0.110 0.890 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -11.873 -9.415 -16.771 22.602 hybrid contribution -0.217 0.989 -0.466 1.115 sum -12.090 -8.426 -17.237 22.678 Atomic orbital electron populations 1.70010 1.05321 1.25627 1.53221 1.25021 0.95244 0.98442 1.00485 0.86382 0.78995 0.83425 0.78048 1.20830 1.21648 1.20995 1.19090 0.92686 0.84842 1.42053 0.91674 1.43959 1.36051 1.01605 1.49482 1.20953 0.97691 0.86913 0.92861 1.22001 0.96975 0.99298 0.98751 1.21670 0.98919 0.96001 0.98783 1.22029 0.86791 0.97024 0.92916 0.89769 1.45901 1.26362 1.30334 1.33003 1.16715 0.83315 0.82628 0.79919 1.90890 1.43529 1.33498 1.69862 1.22136 0.97450 0.95099 0.99792 1.73664 0.99649 1.23529 1.11081 1.43091 1.20340 1.22360 1.23532 0.70701 1.20077 0.96519 0.92189 0.98207 1.20507 0.97259 0.99867 0.93224 1.23052 0.91310 1.03635 1.03172 1.23123 1.01538 1.00712 0.94730 1.20432 0.95838 0.96440 1.00376 1.98370 1.73079 1.37459 1.88515 1.21102 0.88699 0.99013 0.87203 0.93626 0.92667 0.96434 0.92072 0.92656 0.92224 0.93055 0.76877 0.84682 0.88994 0.87291 0.87405 0.88424 0.88601 0.96486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 11.19 55.49 0.62 -26.78 16 2 C 0.01 0.21 4.91 -17.43 -0.09 0.13 16 3 Si 0.90 23.02 29.59 -169.99 -5.03 17.99 16 4 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 7 C -0.26 -7.37 9.59 -15.06 -0.14 -7.52 16 8 H 0.07 1.82 7.89 -52.49 -0.41 1.40 16 9 N -0.59 -15.31 2.99 -172.32 -0.52 -15.83 16 10 C 0.14 3.02 6.52 -3.71 -0.02 3.00 16 11 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 12 C -0.12 -1.94 5.35 -26.69 -0.14 -2.09 16 13 C 0.12 2.39 2.60 -67.81 -0.18 2.22 16 14 H 0.08 1.92 7.59 -51.92 -0.39 1.53 16 15 N -0.71 -12.73 5.08 -54.69 -0.28 -13.01 16 16 C 0.59 11.59 7.79 -12.41 -0.10 11.49 16 17 O -0.51 -11.77 15.54 5.30 0.08 -11.69 16 18 C 0.02 0.29 7.13 -82.76 -0.59 -0.30 16 19 N -0.24 -3.25 11.91 33.42 0.40 -2.85 16 20 N -0.38 -3.68 6.77 33.62 0.23 -3.46 16 21 H 0.45 2.54 7.94 -190.43 -1.51 1.02 16 22 C 0.06 0.61 6.75 -81.90 -0.55 0.06 16 23 C -0.09 -0.66 6.12 -91.77 -0.56 -1.23 16 24 C -0.17 -0.83 10.15 -26.69 -0.27 -1.10 16 25 C -0.16 -0.87 10.24 -26.70 -0.27 -1.14 16 26 C -0.09 -1.38 6.79 -39.31 -0.27 -1.65 16 27 Cl 0.00 -0.04 28.02 -51.86 -1.45 -1.50 16 28 C 0.17 4.20 4.88 -3.71 -0.02 4.18 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.05 1.14 7.93 -51.93 -0.41 0.73 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.80 8.14 -51.92 -0.42 0.38 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 6.09 8.32 -40.82 -0.34 5.75 16 37 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.33 7.16 -51.93 -0.37 -0.04 16 39 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.10 2.84 6.04 -51.93 -0.31 2.52 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -34.83 369.89 -10.86 -45.69 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -7.12 Total: 2.23 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -3.37 Total: 3.63 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.45 Total: -61.93 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -5.03 Total: 17.99 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.45 Total: -1.50 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.83 -10.86 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007781989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.283 kcal (2) G-P(sol) polarization free energy of solvation -34.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds