Wall clock time and date at job start Tue Mar 31 2020 20:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47071 * 240.00363 * 3 2 1 5 5 H 1.48497 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46943 * 120.00443 * 3 2 1 7 7 C 1.38818 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99333 * 163.23714 * 7 2 1 9 9 N 1.36930 * 119.99894 * 342.96819 * 7 2 1 10 10 C 1.46834 * 120.38290 * 330.50773 * 9 7 2 11 11 C 1.52871 * 109.08159 * 236.85899 * 10 9 7 12 12 C 1.53184 * 108.82505 * 308.91812 * 11 10 9 13 13 C 1.52842 * 117.65258 * 269.84820 * 12 11 10 14 14 C 1.52811 * 117.71168 * 200.98448 * 12 11 10 15 15 H 1.08994 * 117.50318 * 0.14041 * 14 12 11 16 16 N 1.46495 * 117.50120 * 215.09473 * 14 12 11 17 17 C 1.34776 * 119.99986 * 155.00335 * 16 14 12 18 18 O 1.21285 * 120.00170 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99766 * 180.02562 * 17 16 14 20 20 N 1.46505 * 109.46803 * 180.02562 * 19 17 16 21 21 C 1.35044 * 126.03966 * 125.00352 * 20 19 17 22 22 C 1.35372 * 107.72810 * 179.97438 * 21 20 19 23 23 Cl 1.73601 * 126.04395 * 179.97438 * 22 21 20 24 24 C 1.39925 * 107.90953 * 359.97438 * 22 21 20 25 25 N 1.30857 * 108.21322 * 359.76067 * 24 22 21 26 26 C 1.53179 * 115.07592 * 55.31307 * 12 11 10 27 27 C 1.46845 * 120.37880 * 150.79274 * 9 7 2 28 28 H 0.97003 * 120.00197 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58150 * 356.70120 * 10 9 7 30 30 H 1.09002 * 109.57971 * 117.09576 * 10 9 7 31 31 H 1.08995 * 109.66848 * 189.04632 * 11 10 9 32 32 H 1.08999 * 109.55997 * 68.72538 * 11 10 9 33 33 H 1.09001 * 117.50803 * 359.75651 * 13 12 11 34 34 H 1.09000 * 117.50295 * 144.81368 * 13 12 11 35 35 H 0.97006 * 120.00295 * 335.00218 * 16 14 12 36 36 H 1.09003 * 109.47356 * 299.99324 * 19 17 16 37 37 H 1.08997 * 109.47692 * 60.00379 * 19 17 16 38 38 H 1.07998 * 126.13281 * 359.93742 * 21 20 19 39 39 H 1.08000 * 125.89428 * 180.02562 * 24 22 21 40 40 H 1.09002 * 109.59136 * 184.76660 * 26 12 11 41 41 H 1.09003 * 109.70875 * 64.40496 * 26 12 11 42 42 H 1.09003 * 109.57585 * 242.89999 * 27 9 7 43 43 H 1.09005 * 109.58219 * 3.16364 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0558 -1.2219 -0.2703 9 7 1.3705 -2.3622 0.3463 10 6 0.2479 -2.3369 1.2924 11 6 0.5636 -3.2624 2.4674 12 6 0.9862 -4.6294 1.9202 13 6 -0.1081 -5.6724 1.6950 14 6 0.8773 -5.8334 2.8548 15 1 0.5018 -5.6561 3.8626 16 7 1.8983 -6.8772 2.7351 17 6 2.1772 -7.6709 3.7881 18 8 1.5827 -7.5214 4.8346 19 6 3.2279 -8.7443 3.6650 20 7 3.3420 -9.4638 4.9361 21 6 3.2256 -10.7983 5.1069 22 6 3.3957 -11.0617 6.4238 23 17 3.3401 -12.6294 7.1674 24 6 3.6244 -9.8470 7.0796 25 7 3.5978 -8.8895 6.1880 26 6 2.1546 -4.5993 0.9302 27 6 1.8033 -3.6465 -0.2189 28 1 -0.4850 0.8401 0.0004 29 1 0.1019 -1.3208 1.6590 30 1 -0.6581 -2.6809 0.7935 31 1 -0.3219 -3.3768 3.0925 32 1 1.3756 -2.8382 3.0581 33 1 -1.1317 -5.3890 1.9398 34 1 0.0035 -6.3430 0.8429 35 1 2.3735 -6.9971 1.8980 36 1 2.9440 -9.4421 2.8773 37 1 4.1864 -8.2879 3.4182 38 1 3.0310 -11.5249 4.3320 39 1 3.7976 -9.7217 8.1382 40 1 2.3249 -5.6009 0.5352 41 1 3.0548 -4.2475 1.4343 42 1 0.9965 -4.0740 -0.8142 43 1 2.6795 -3.4918 -0.8487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016853954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:08 Heat of formation + Delta-G solvation = 92.687770 kcal Electronic energy + Delta-G solvation = -26235.720500 eV Core-core repulsion = 22345.424690 eV Total energy + Delta-G solvation = -3890.295810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.65850 -40.02760 -38.48747 -36.72077 -35.56993 -33.79438 -33.13263 -31.64087 -30.41299 -30.09613 -28.50672 -27.65371 -24.38878 -22.88894 -22.52370 -21.60618 -21.52962 -20.83129 -20.45135 -18.33643 -17.86378 -17.62618 -16.55618 -16.06011 -15.96145 -15.09344 -14.84041 -14.73857 -14.59866 -14.11845 -13.97965 -13.62030 -13.56495 -13.43333 -13.21192 -12.95256 -12.71257 -12.31278 -12.04424 -11.72737 -11.70408 -11.64831 -11.38914 -11.01673 -10.79693 -10.75026 -10.49781 -10.40242 -10.37150 -9.99932 -9.81169 -9.75077 -9.66263 -9.42438 -8.76981 -8.58322 -8.47875 -6.67098 -5.81880 -3.26238 1.32461 1.55495 2.27634 2.31314 2.39582 2.86364 3.36128 3.42414 3.43565 4.03943 4.12654 4.25777 4.34940 4.46831 4.55666 4.63520 4.88727 5.04588 5.05360 5.09922 5.25049 5.36298 5.41933 5.58413 5.75842 5.95824 6.00405 6.00588 6.02225 6.23073 6.30811 6.36992 6.45634 6.56112 6.58661 6.65548 6.77718 6.90872 7.21210 7.26273 7.33405 7.63927 7.76220 7.96179 8.43791 9.18687 9.81966 10.38490 11.25893 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.001871 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.802434 B =14960.592466 C =15150.259223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.106 4.106 12 C -0.094 4.094 13 C -0.181 4.181 14 C 0.069 3.931 15 H 0.132 0.868 16 N -0.692 5.692 17 C 0.500 3.500 18 O -0.511 6.511 19 C 0.116 3.884 20 N -0.354 5.354 21 C 0.072 3.928 22 C -0.185 4.185 23 Cl -0.045 7.045 24 C 0.059 3.941 25 N -0.248 5.248 26 C -0.097 4.097 27 C 0.150 3.850 28 H 0.255 0.745 29 H 0.090 0.910 30 H 0.018 0.982 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.401 0.599 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.019 0.981 43 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.077 -23.620 7.205 25.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.385 4.385 8 H 0.081 0.919 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.146 4.146 12 C -0.095 4.095 13 C -0.219 4.219 14 C -0.036 4.036 15 H 0.150 0.850 16 N -0.343 5.343 17 C 0.284 3.716 18 O -0.385 6.385 19 C -0.009 4.009 20 N -0.136 5.136 21 C -0.075 4.075 22 C -0.223 4.223 23 Cl -0.017 7.017 24 C -0.129 4.129 25 N -0.068 5.068 26 C -0.137 4.137 27 C 0.023 3.977 28 H 0.065 0.935 29 H 0.108 0.892 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.237 0.763 36 H 0.147 0.853 37 H 0.139 0.861 38 H 0.201 0.799 39 H 0.208 0.792 40 H 0.063 0.937 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.620 -22.152 7.672 24.107 hybrid contribution 0.459 -0.309 -0.305 0.632 sum 6.079 -22.461 7.367 24.407 Atomic orbital electron populations 1.70014 1.05288 1.25686 1.53500 1.25068 0.95272 0.98468 1.00694 0.86383 0.78957 0.83348 0.78149 1.20869 1.21614 1.20998 1.19122 0.92459 0.84913 1.42050 0.91895 1.43929 1.37459 1.01649 1.48048 1.20659 0.88815 0.98581 0.87230 1.21816 0.99758 0.93131 0.99884 1.21962 0.97865 0.91201 0.98494 1.23542 0.96323 1.02655 0.99419 1.21923 0.93139 0.91246 0.97321 0.85028 1.45291 1.40342 1.34125 1.14547 1.20361 0.84021 0.82790 0.84445 1.90801 1.50510 1.69477 1.27680 1.21567 1.01260 0.95657 0.82397 1.47816 1.54706 1.04211 1.06854 1.22201 1.01622 0.86208 0.97472 1.20738 1.20579 0.88350 0.92655 1.98327 1.97773 1.23817 1.81774 1.23951 1.00061 0.88496 1.00399 1.77694 1.20452 1.20850 0.87787 1.21634 0.96142 0.98616 0.97293 1.20833 0.97436 0.87085 0.92343 0.93532 0.89179 0.96373 0.92976 0.92097 0.88265 0.88995 0.76317 0.85335 0.86149 0.79918 0.79171 0.93681 0.91712 0.96328 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.22 55.49 0.62 -25.06 16 2 C 0.00 0.10 4.90 -17.43 -0.09 0.02 16 3 Si 0.90 21.37 29.59 -169.99 -5.03 16.34 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.26 -6.84 9.54 -15.06 -0.14 -6.98 16 8 H 0.06 1.65 7.88 -52.49 -0.41 1.24 16 9 N -0.59 -14.17 2.94 -172.55 -0.51 -14.68 16 10 C 0.17 3.99 5.36 -3.93 -0.02 3.97 16 11 C -0.11 -1.98 5.81 -26.70 -0.16 -2.13 16 12 C -0.09 -1.45 1.94 -154.50 -0.30 -1.75 16 13 C -0.18 -2.43 9.87 -26.79 -0.26 -2.70 16 14 C 0.07 0.94 6.14 -68.01 -0.42 0.52 16 15 H 0.13 2.04 7.40 -51.93 -0.38 1.65 16 16 N -0.69 -7.33 5.34 -53.88 -0.29 -7.61 16 17 C 0.50 5.74 7.86 -10.98 -0.09 5.66 16 18 O -0.51 -8.42 15.29 5.55 0.08 -8.33 16 19 C 0.12 0.83 6.99 -5.19 -0.04 0.79 16 20 N -0.35 -3.53 3.40 -62.50 -0.21 -3.74 16 21 C 0.07 0.58 11.43 -17.16 -0.20 0.39 16 22 C -0.18 -1.72 6.65 -39.97 -0.27 -1.98 16 23 Cl -0.04 -0.37 29.30 -51.86 -1.52 -1.89 16 24 C 0.06 0.62 12.02 -17.34 -0.21 0.41 16 25 N -0.25 -3.16 11.66 30.64 0.36 -2.81 16 26 C -0.10 -1.49 5.37 -26.46 -0.14 -1.64 16 27 C 0.15 2.92 6.52 -3.67 -0.02 2.90 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.09 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.40 3.12 7.12 -40.82 -0.29 2.83 16 36 H 0.13 0.36 8.07 -51.93 -0.42 -0.06 16 37 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.18 0.79 8.06 -52.49 -0.42 0.36 16 39 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.04 0.53 6.75 -51.93 -0.35 0.18 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 LS Contribution 371.07 15.07 5.59 5.59 Total: -1.00 -34.28 371.07 -9.18 -43.47 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -5.94 Total: 1.26 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.35 Total: -2.53 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.03 Total: -53.90 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.33 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.28 -9.18 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016853954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.153 kcal (2) G-P(sol) polarization free energy of solvation -34.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds