Wall clock time and date at job start Tue Mar 31 2020 20:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86799 * 120.00074 * 2 1 4 4 H 1.48498 * 109.47071 * 240.00363 * 3 2 1 5 5 H 1.48497 * 109.47128 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46943 * 120.00443 * 3 2 1 7 7 C 1.38818 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99333 * 163.23714 * 7 2 1 9 9 N 1.36930 * 119.99894 * 342.96819 * 7 2 1 10 10 C 1.46834 * 120.38290 * 330.50773 * 9 7 2 11 11 C 1.52871 * 109.08159 * 236.85899 * 10 9 7 12 12 C 1.53184 * 108.82505 * 308.91812 * 11 10 9 13 13 C 1.52842 * 117.65258 * 269.84820 * 12 11 10 14 14 C 1.52811 * 117.71168 * 200.98448 * 12 11 10 15 15 H 1.08994 * 117.50318 * 0.14041 * 14 12 11 16 16 N 1.46495 * 117.50120 * 215.09473 * 14 12 11 17 17 C 1.34776 * 119.99986 * 155.00335 * 16 14 12 18 18 O 1.21285 * 120.00170 * 0.02562 * 17 16 14 19 19 C 1.50702 * 119.99766 * 180.02562 * 17 16 14 20 20 N 1.46505 * 109.46803 * 180.02562 * 19 17 16 21 21 C 1.35044 * 126.03966 * 125.00352 * 20 19 17 22 22 C 1.35372 * 107.72810 * 179.97438 * 21 20 19 23 23 Cl 1.73601 * 126.04395 * 179.97438 * 22 21 20 24 24 C 1.39925 * 107.90953 * 359.97438 * 22 21 20 25 25 N 1.30857 * 108.21322 * 359.76067 * 24 22 21 26 26 C 1.53179 * 115.07592 * 55.31307 * 12 11 10 27 27 C 1.46845 * 120.37880 * 150.79274 * 9 7 2 28 28 H 0.97003 * 120.00197 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58150 * 356.70120 * 10 9 7 30 30 H 1.09002 * 109.57971 * 117.09576 * 10 9 7 31 31 H 1.08995 * 109.66848 * 189.04632 * 11 10 9 32 32 H 1.08999 * 109.55997 * 68.72538 * 11 10 9 33 33 H 1.09001 * 117.50803 * 359.75651 * 13 12 11 34 34 H 1.09000 * 117.50295 * 144.81368 * 13 12 11 35 35 H 0.97006 * 120.00295 * 335.00218 * 16 14 12 36 36 H 1.09003 * 109.47356 * 299.99324 * 19 17 16 37 37 H 1.08997 * 109.47692 * 60.00379 * 19 17 16 38 38 H 1.07998 * 126.13281 * 359.93742 * 21 20 19 39 39 H 1.08000 * 125.89428 * 180.02562 * 24 22 21 40 40 H 1.09002 * 109.59136 * 184.76660 * 26 12 11 41 41 H 1.09003 * 109.70875 * 64.40496 * 26 12 11 42 42 H 1.09003 * 109.57585 * 242.89999 * 27 9 7 43 43 H 1.09005 * 109.58219 * 3.16364 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0558 -1.2219 -0.2703 9 7 1.3705 -2.3622 0.3463 10 6 0.2479 -2.3369 1.2924 11 6 0.5636 -3.2624 2.4674 12 6 0.9862 -4.6294 1.9202 13 6 -0.1081 -5.6724 1.6950 14 6 0.8773 -5.8334 2.8548 15 1 0.5018 -5.6561 3.8626 16 7 1.8983 -6.8772 2.7351 17 6 2.1772 -7.6709 3.7881 18 8 1.5827 -7.5214 4.8346 19 6 3.2279 -8.7443 3.6650 20 7 3.3420 -9.4638 4.9361 21 6 3.2256 -10.7983 5.1069 22 6 3.3957 -11.0617 6.4238 23 17 3.3401 -12.6294 7.1674 24 6 3.6244 -9.8470 7.0796 25 7 3.5978 -8.8895 6.1880 26 6 2.1546 -4.5993 0.9302 27 6 1.8033 -3.6465 -0.2189 28 1 -0.4850 0.8401 0.0004 29 1 0.1019 -1.3208 1.6590 30 1 -0.6581 -2.6809 0.7935 31 1 -0.3219 -3.3768 3.0925 32 1 1.3756 -2.8382 3.0581 33 1 -1.1317 -5.3890 1.9398 34 1 0.0035 -6.3430 0.8429 35 1 2.3735 -6.9971 1.8980 36 1 2.9440 -9.4421 2.8773 37 1 4.1864 -8.2879 3.4182 38 1 3.0310 -11.5249 4.3320 39 1 3.7976 -9.7217 8.1382 40 1 2.3249 -5.6009 0.5352 41 1 3.0548 -4.2475 1.4343 42 1 0.9965 -4.0740 -0.8142 43 1 2.6795 -3.4918 -0.8487 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016853954.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:07 Heat of formation + Delta-G solvation = 70.141301 kcal Electronic energy + Delta-G solvation = -26236.698188 eV Core-core repulsion = 22345.424690 eV Total energy + Delta-G solvation = -3891.273498 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.32862 -41.05823 -39.69188 -37.35471 -37.13120 -34.69114 -34.21756 -33.29370 -31.70189 -31.06052 -30.02860 -28.42656 -26.22832 -24.09446 -23.74993 -22.84318 -22.21709 -22.01697 -21.38420 -19.81766 -18.76237 -18.40215 -18.13666 -17.16197 -16.76463 -16.64948 -15.93437 -15.65135 -15.56114 -15.30932 -15.27849 -14.99398 -14.74167 -14.62412 -14.23331 -14.15026 -13.79429 -13.55620 -13.25500 -13.10366 -12.87739 -12.67962 -12.56877 -12.53307 -12.34179 -12.29200 -12.03127 -11.77996 -11.49098 -11.39601 -11.30361 -11.20481 -10.75293 -10.49624 -10.46025 -9.69833 -9.41685 -8.61061 -7.86172 -5.32951 0.68834 0.97060 1.44650 1.45851 1.48776 1.54780 1.61971 1.75813 2.06064 2.51228 2.93403 3.28872 3.48376 3.64742 3.66135 3.80380 3.86136 3.87883 3.98157 4.07262 4.13214 4.16697 4.50942 4.53170 4.61141 4.62830 4.73961 4.84593 4.90396 4.94230 5.04236 5.09228 5.17044 5.31387 5.34119 5.39379 5.46679 5.56351 5.65806 5.77184 5.79216 6.41682 6.46762 6.53080 7.16336 7.16761 7.89710 8.40175 9.18699 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.031602 B = 0.001871 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.802434 B =14960.592466 C =15150.259223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.051 4.051 3 Si 0.963 3.037 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.281 1.281 7 C -0.262 4.262 8 H 0.065 0.935 9 N -0.608 5.608 10 C 0.182 3.818 11 C -0.097 4.097 12 C -0.114 4.114 13 C -0.166 4.166 14 C 0.087 3.913 15 H 0.110 0.890 16 N -0.679 5.679 17 C 0.498 3.502 18 O -0.567 6.567 19 C 0.117 3.883 20 N -0.361 5.361 21 C 0.086 3.914 22 C -0.204 4.204 23 Cl -0.040 7.040 24 C 0.050 3.950 25 N -0.302 5.302 26 C -0.082 4.082 27 C 0.143 3.857 28 H 0.249 0.751 29 H 0.050 0.950 30 H -0.001 1.001 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.419 0.581 36 H 0.183 0.817 37 H 0.145 0.855 38 H 0.225 0.775 39 H 0.202 0.798 40 H 0.093 0.907 41 H 0.056 0.944 42 H 0.019 0.981 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -26.580 6.040 28.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.222 1.222 6 H -0.207 1.207 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.332 5.332 10 C 0.056 3.944 11 C -0.136 4.136 12 C -0.116 4.116 13 C -0.204 4.204 14 C -0.019 4.019 15 H 0.128 0.872 16 N -0.331 5.331 17 C 0.284 3.716 18 O -0.445 6.445 19 C -0.006 4.006 20 N -0.143 5.143 21 C -0.061 4.061 22 C -0.242 4.242 23 Cl -0.012 7.012 24 C -0.137 4.137 25 N -0.122 5.122 26 C -0.121 4.121 27 C 0.018 3.982 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.018 0.982 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.258 0.742 36 H 0.200 0.800 37 H 0.163 0.837 38 H 0.242 0.758 39 H 0.218 0.782 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.109 -25.147 6.474 26.923 hybrid contribution -0.006 0.553 0.050 0.556 sum 7.103 -24.594 6.524 26.417 Atomic orbital electron populations 1.70166 1.06642 1.25827 1.55297 1.25797 0.96001 1.01484 1.01369 0.85406 0.77636 0.79504 0.78307 1.19877 1.22177 1.20742 1.19467 0.92762 0.86221 1.40808 0.91684 1.44196 1.37441 1.02718 1.48800 1.20390 0.88216 0.97391 0.88413 1.21559 0.99706 0.94405 0.97919 1.21790 0.99542 0.90136 1.00118 1.23616 0.95605 1.01237 0.99956 1.21524 0.93632 0.90635 0.96148 0.87227 1.45143 1.39600 1.32975 1.15401 1.21175 0.83966 0.83106 0.83343 1.90792 1.52755 1.71125 1.29826 1.21943 1.00639 0.95516 0.82541 1.48058 1.54466 1.04949 1.06804 1.22860 0.99224 0.86113 0.97944 1.20905 1.21649 0.88282 0.93375 1.98324 1.97820 1.23227 1.81849 1.24261 0.99520 0.88952 1.00990 1.77612 1.22596 1.22527 0.89507 1.21457 0.95388 0.99864 0.95370 1.21036 0.97273 0.85902 0.93979 0.94185 0.93117 0.98249 0.91954 0.93684 0.88662 0.86479 0.74187 0.80015 0.83743 0.75834 0.78171 0.88856 0.92556 0.96301 0.92581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.16 11.22 21.65 0.24 -54.91 16 2 C -0.05 -2.84 4.90 84.86 0.42 -2.43 16 3 Si 0.96 44.78 29.59 68.60 2.03 46.81 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 7 C -0.26 -14.20 9.54 84.04 0.80 -13.40 16 8 H 0.07 3.42 7.88 -2.91 -0.02 3.39 16 9 N -0.61 -29.64 2.94 -699.84 -2.06 -31.70 16 10 C 0.18 8.68 5.36 86.27 0.46 9.14 16 11 C -0.10 -3.64 5.81 30.61 0.18 -3.46 16 12 C -0.11 -3.35 1.94 -52.18 -0.10 -3.45 16 13 C -0.17 -4.00 9.87 30.56 0.30 -3.70 16 14 C 0.09 2.18 6.14 44.94 0.28 2.45 16 15 H 0.11 3.33 7.40 -2.39 -0.02 3.32 16 16 N -0.68 -11.90 5.34 -442.77 -2.37 -14.27 16 17 C 0.50 10.03 7.86 87.66 0.69 10.72 16 18 O -0.57 -18.21 15.29 -3.04 -0.05 -18.25 16 19 C 0.12 1.16 6.99 85.63 0.60 1.75 16 20 N -0.36 -6.19 3.40 -351.66 -1.19 -7.38 16 21 C 0.09 1.11 11.43 83.54 0.95 2.07 16 22 C -0.20 -3.44 6.65 22.02 0.15 -3.29 16 23 Cl -0.04 -0.60 29.30 -2.72 -0.08 -0.68 16 24 C 0.05 1.02 12.02 85.25 1.02 2.05 16 25 N -0.30 -7.48 11.66 -56.98 -0.66 -8.15 16 26 C -0.08 -2.28 5.37 30.77 0.17 -2.11 16 27 C 0.14 5.40 6.52 86.43 0.56 5.96 16 28 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.05 2.80 5.95 -2.39 -0.01 2.78 16 30 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 2.16 8.10 -2.39 -0.02 2.14 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.42 4.29 7.12 -92.70 -0.66 3.63 16 36 H 0.18 -0.19 8.07 -2.39 -0.02 -0.21 16 37 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.23 0.78 8.06 -2.91 -0.02 0.75 16 39 H 0.20 3.19 8.06 -2.91 -0.02 3.16 16 40 H 0.09 1.71 6.75 -2.39 -0.02 1.69 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.67 16 42 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 2.06 7.92 -2.38 -0.02 2.04 16 Total: -1.00 -79.91 371.07 2.72 -77.19 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: 0.38 Total: 9.06 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 6.48 Total: 2.29 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -6.04 Total: -116.41 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.05 Total: -18.25 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -79.91 2.72 -77.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016853954.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.330 kcal (2) G-P(sol) polarization free energy of solvation -79.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds