Wall clock time and date at job start Tue Mar 31 2020 20:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48506 * 109.46932 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47239 * 119.99975 * 3 2 1 7 7 C 1.38814 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00017 * 197.84850 * 7 2 1 9 9 N 1.36938 * 119.99726 * 17.85214 * 7 2 1 10 10 C 1.46842 * 120.38423 * 28.90689 * 9 7 2 11 11 C 1.53345 * 108.81203 * 123.07852 * 10 9 7 12 12 C 1.53182 * 108.77045 * 51.31451 * 11 10 9 13 13 C 1.52843 * 117.66253 * 90.02744 * 12 11 10 14 14 C 1.52812 * 117.71582 * 158.88712 * 12 11 10 15 15 H 1.09002 * 117.50138 * 359.88018 * 14 12 11 16 16 N 1.46499 * 117.50715 * 144.89804 * 14 12 11 17 17 C 1.34773 * 120.00337 * 205.00035 * 16 14 12 18 18 O 1.21281 * 120.00025 * 359.97438 * 17 16 14 19 19 C 1.50707 * 120.00119 * 179.97438 * 17 16 14 20 20 N 1.46496 * 109.46941 * 179.97438 * 19 17 16 21 21 C 1.35049 * 126.03549 * 125.00146 * 20 19 17 22 22 C 1.35375 * 107.72555 * 179.97438 * 21 20 19 23 23 Cl 1.73606 * 126.04131 * 180.02562 * 22 21 20 24 24 C 1.39930 * 107.91134 * 0.02562 * 22 21 20 25 25 N 1.30848 * 108.20760 * 359.71746 * 24 22 21 26 26 C 1.53185 * 115.07518 * 304.55085 * 12 11 10 27 27 C 1.46845 * 120.37777 * 208.88756 * 9 7 2 28 28 H 0.97004 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.57882 * 242.87279 * 10 9 7 30 30 H 1.09000 * 109.58341 * 3.27477 * 10 9 7 31 31 H 1.09002 * 109.58740 * 171.09940 * 11 10 9 32 32 H 1.08994 * 109.58867 * 291.52519 * 11 10 9 33 33 H 1.09000 * 117.50392 * 215.18821 * 13 12 11 34 34 H 1.09001 * 117.50588 * 0.23162 * 13 12 11 35 35 H 0.97004 * 119.99868 * 24.99438 * 16 14 12 36 36 H 1.08997 * 109.46763 * 300.00053 * 19 17 16 37 37 H 1.09000 * 109.46919 * 60.00053 * 19 17 16 38 38 H 1.07997 * 126.13383 * 0.02562 * 21 20 19 39 39 H 1.07994 * 125.89298 * 179.97438 * 24 22 21 40 40 H 1.09003 * 109.58781 * 295.66100 * 26 12 11 41 41 H 1.08995 * 109.58859 * 175.22997 * 26 12 11 42 42 H 1.09000 * 109.58234 * 356.71537 * 27 9 7 43 43 H 1.09002 * 109.58001 * 117.12240 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0513 -1.2245 0.2872 9 7 1.3750 -2.3597 -0.3625 10 6 0.2558 -2.3261 -1.3125 11 6 0.5865 -3.2400 -2.4987 12 6 1.0071 -4.6116 -1.9619 13 6 -0.0869 -5.6589 -1.7560 14 6 0.9079 -5.8065 -2.9093 15 1 0.5406 -5.6196 -3.9184 16 7 1.9298 -6.8497 -2.7920 17 6 2.2186 -7.6322 -3.8505 18 8 1.6323 -7.4732 -4.9002 19 6 3.2703 -8.7050 -3.7300 20 7 3.3959 -9.4114 -5.0072 21 6 4.5341 -9.5768 -5.7150 22 6 4.2277 -10.2818 -6.8293 23 17 5.3403 -10.7612 -8.0728 24 6 2.8558 -10.5557 -6.8016 25 7 2.3578 -10.0394 -5.7073 26 6 2.1676 -4.5896 -0.9622 27 6 1.8055 -3.6488 0.1935 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6510 -2.6790 -0.8213 30 1 0.1081 -1.3061 -1.6672 31 1 -0.2938 -3.3497 -3.1320 32 1 1.4033 -2.8076 -3.0765 33 1 0.0190 -6.3378 -0.9098 34 1 -1.1092 -5.3750 -2.0061 35 1 2.3986 -6.9771 -1.9524 36 1 4.2259 -8.2493 -3.4707 37 1 2.9814 -9.4111 -2.9515 38 1 5.5132 -9.2128 -5.4407 39 1 2.3041 -11.1028 -7.5517 40 1 3.0696 -4.2299 -1.4573 41 1 2.3363 -5.5948 -0.5760 42 1 2.6778 -3.4993 0.8297 43 1 0.9947 -4.0836 0.7780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016853955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:12 Heat of formation + Delta-G solvation = 92.679696 kcal Electronic energy + Delta-G solvation = -26245.459154 eV Core-core repulsion = 22355.162993 eV Total energy + Delta-G solvation = -3890.296160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.65728 -40.02633 -38.48430 -36.70946 -35.57197 -33.79385 -33.13419 -31.64865 -30.40995 -30.07585 -28.51006 -27.65119 -24.39914 -22.89030 -22.53547 -21.58866 -21.53700 -20.83434 -20.45483 -18.34574 -17.85982 -17.62220 -16.54251 -16.10245 -15.93617 -15.10884 -14.81518 -14.70593 -14.65135 -14.11805 -13.96640 -13.63024 -13.57758 -13.41366 -13.18985 -12.99959 -12.69931 -12.31689 -12.04268 -11.73039 -11.69241 -11.65139 -11.39204 -11.02838 -10.79787 -10.75550 -10.51019 -10.40803 -10.37631 -10.00455 -9.82318 -9.74919 -9.66533 -9.42852 -8.76093 -8.58876 -8.48680 -6.68962 -5.82858 -3.26395 1.32380 1.56313 2.27972 2.31134 2.40319 2.85930 3.35289 3.41773 3.42698 4.02914 4.15951 4.26669 4.35702 4.46064 4.54085 4.63093 4.88850 5.04891 5.05283 5.10280 5.25385 5.35148 5.41346 5.57610 5.75668 5.96751 5.99263 6.01177 6.01919 6.22078 6.30962 6.36345 6.45833 6.55093 6.57771 6.63429 6.76661 6.89771 7.20723 7.26299 7.32076 7.62763 7.75300 7.96282 8.42382 9.17547 9.81078 10.37413 11.24858 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.001956 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.817474 B =14311.949765 C =14829.300069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.589 5.589 10 C 0.173 3.827 11 C -0.106 4.106 12 C -0.094 4.094 13 C -0.180 4.180 14 C 0.069 3.931 15 H 0.132 0.868 16 N -0.692 5.692 17 C 0.500 3.500 18 O -0.511 6.511 19 C 0.117 3.883 20 N -0.354 5.354 21 C 0.073 3.927 22 C -0.185 4.185 23 Cl -0.045 7.045 24 C 0.059 3.941 25 N -0.250 5.250 26 C -0.097 4.097 27 C 0.149 3.851 28 H 0.255 0.745 29 H 0.019 0.981 30 H 0.090 0.910 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.092 0.908 34 H 0.099 0.901 35 H 0.401 0.599 36 H 0.130 0.870 37 H 0.120 0.880 38 H 0.184 0.816 39 H 0.191 0.809 40 H 0.064 0.936 41 H 0.045 0.955 42 H 0.054 0.946 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.488 -21.391 -8.355 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.386 4.386 8 H 0.082 0.918 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.146 4.146 12 C -0.096 4.096 13 C -0.219 4.219 14 C -0.036 4.036 15 H 0.149 0.851 16 N -0.343 5.343 17 C 0.284 3.716 18 O -0.385 6.385 19 C -0.009 4.009 20 N -0.136 5.136 21 C -0.074 4.074 22 C -0.224 4.224 23 Cl -0.016 7.016 24 C -0.129 4.129 25 N -0.070 5.070 26 C -0.137 4.137 27 C 0.023 3.977 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.110 0.890 34 H 0.117 0.883 35 H 0.237 0.763 36 H 0.148 0.852 37 H 0.137 0.863 38 H 0.201 0.799 39 H 0.208 0.792 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 6.973 -20.911 -8.369 23.578 hybrid contribution 1.461 0.638 -0.122 1.599 sum 8.434 -20.273 -8.490 23.542 Atomic orbital electron populations 1.70020 1.05292 1.25711 1.53425 1.25055 0.95254 0.98485 1.00760 0.86387 0.78971 0.83369 0.78139 1.21018 1.21619 1.20870 1.19126 0.92805 0.85036 1.41586 0.91848 1.43962 1.37859 1.01468 1.47828 1.20769 0.88798 0.98720 0.87021 1.21890 0.99731 0.93052 0.99908 1.21974 0.97981 0.91241 0.98398 1.23535 0.96249 1.02529 0.99580 1.21920 0.93109 0.91277 0.97310 0.85052 1.45292 1.40438 1.34503 1.14079 1.20362 0.84202 0.82487 0.84570 1.90800 1.50929 1.68823 1.27920 1.21566 1.01697 0.94530 0.83080 1.47805 1.05514 1.42190 1.18083 1.22224 0.92749 0.99903 0.92494 1.20741 0.92164 1.13438 0.96011 1.98328 1.61042 1.91026 1.51252 1.23936 0.92098 0.99949 0.96892 1.77652 1.10575 1.12258 1.06502 1.21638 0.96192 0.98612 0.97225 1.20837 0.97421 0.87096 0.92378 0.93520 0.96317 0.89141 0.92990 0.92109 0.88969 0.88254 0.76317 0.85225 0.86268 0.79863 0.79184 0.91750 0.93648 0.92711 0.96296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.60 11.23 55.49 0.62 -24.98 16 2 C 0.00 0.09 4.88 -17.43 -0.09 0.01 16 3 Si 0.90 21.26 29.59 -169.99 -5.03 16.23 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.26 -6.80 9.54 -15.06 -0.14 -6.94 16 8 H 0.06 1.65 7.89 -52.49 -0.41 1.24 16 9 N -0.59 -14.10 2.94 -172.26 -0.51 -14.61 16 10 C 0.17 3.97 5.40 -3.68 -0.02 3.95 16 11 C -0.11 -1.96 5.83 -26.46 -0.15 -2.11 16 12 C -0.09 -1.46 1.94 -154.50 -0.30 -1.75 16 13 C -0.18 -2.45 9.86 -26.80 -0.26 -2.72 16 14 C 0.07 0.94 6.14 -68.01 -0.42 0.52 16 15 H 0.13 2.03 7.40 -51.93 -0.38 1.64 16 16 N -0.69 -7.33 5.34 -53.88 -0.29 -7.62 16 17 C 0.50 5.75 7.86 -10.98 -0.09 5.66 16 18 O -0.51 -8.42 15.29 5.56 0.08 -8.34 16 19 C 0.12 0.83 6.99 -5.19 -0.04 0.79 16 20 N -0.35 -3.53 3.40 -62.51 -0.21 -3.74 16 21 C 0.07 0.61 11.43 -17.16 -0.20 0.42 16 22 C -0.18 -1.74 6.65 -39.97 -0.27 -2.01 16 23 Cl -0.04 -0.38 29.30 -51.86 -1.52 -1.89 16 24 C 0.06 0.61 12.02 -17.34 -0.21 0.40 16 25 N -0.25 -3.12 11.66 30.64 0.36 -2.77 16 26 C -0.10 -1.47 5.37 -26.45 -0.14 -1.61 16 27 C 0.15 2.90 6.52 -3.67 -0.02 2.88 16 28 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 2.35 5.93 -51.93 -0.31 2.05 16 31 H 0.05 0.88 8.10 -51.93 -0.42 0.45 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.40 3.12 7.12 -40.82 -0.29 2.83 16 36 H 0.13 0.42 8.07 -51.93 -0.42 0.00 16 37 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.19 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.53 6.75 -51.93 -0.35 0.18 16 42 H 0.05 1.04 7.92 -51.93 -0.41 0.63 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 371.10 15.07 5.59 5.59 Total: -1.00 -34.11 371.10 -9.18 -43.29 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -5.94 Total: 1.38 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -2.34 Total: -2.54 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.03 Total: -53.71 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: 0.08 Total: -8.34 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.52 Total: -1.89 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.11 -9.18 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016853955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.968 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds