Wall clock time and date at job start Tue Mar 31 2020 20:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99931 * 2 1 4 4 H 1.48506 * 109.46932 * 239.99957 * 3 2 1 5 5 H 1.48502 * 109.47002 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47239 * 119.99975 * 3 2 1 7 7 C 1.38814 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00017 * 197.84850 * 7 2 1 9 9 N 1.36938 * 119.99726 * 17.85214 * 7 2 1 10 10 C 1.46842 * 120.38423 * 28.90689 * 9 7 2 11 11 C 1.53345 * 108.81203 * 123.07852 * 10 9 7 12 12 C 1.53182 * 108.77045 * 51.31451 * 11 10 9 13 13 C 1.52843 * 117.66253 * 90.02744 * 12 11 10 14 14 C 1.52812 * 117.71582 * 158.88712 * 12 11 10 15 15 H 1.09002 * 117.50138 * 359.88018 * 14 12 11 16 16 N 1.46499 * 117.50715 * 144.89804 * 14 12 11 17 17 C 1.34773 * 120.00337 * 205.00035 * 16 14 12 18 18 O 1.21281 * 120.00025 * 359.97438 * 17 16 14 19 19 C 1.50707 * 120.00119 * 179.97438 * 17 16 14 20 20 N 1.46496 * 109.46941 * 179.97438 * 19 17 16 21 21 C 1.35049 * 126.03549 * 125.00146 * 20 19 17 22 22 C 1.35375 * 107.72555 * 179.97438 * 21 20 19 23 23 Cl 1.73606 * 126.04131 * 180.02562 * 22 21 20 24 24 C 1.39930 * 107.91134 * 0.02562 * 22 21 20 25 25 N 1.30848 * 108.20760 * 359.71746 * 24 22 21 26 26 C 1.53185 * 115.07518 * 304.55085 * 12 11 10 27 27 C 1.46845 * 120.37777 * 208.88756 * 9 7 2 28 28 H 0.97004 * 120.00394 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.57882 * 242.87279 * 10 9 7 30 30 H 1.09000 * 109.58341 * 3.27477 * 10 9 7 31 31 H 1.09002 * 109.58740 * 171.09940 * 11 10 9 32 32 H 1.08994 * 109.58867 * 291.52519 * 11 10 9 33 33 H 1.09000 * 117.50392 * 215.18821 * 13 12 11 34 34 H 1.09001 * 117.50588 * 0.23162 * 13 12 11 35 35 H 0.97004 * 119.99868 * 24.99438 * 16 14 12 36 36 H 1.08997 * 109.46763 * 300.00053 * 19 17 16 37 37 H 1.09000 * 109.46919 * 60.00053 * 19 17 16 38 38 H 1.07997 * 126.13383 * 0.02562 * 21 20 19 39 39 H 1.07994 * 125.89298 * 179.97438 * 24 22 21 40 40 H 1.09003 * 109.58781 * 295.66100 * 26 12 11 41 41 H 1.08995 * 109.58859 * 175.22997 * 26 12 11 42 42 H 1.09000 * 109.58234 * 356.71537 * 27 9 7 43 43 H 1.09002 * 109.58001 * 117.12240 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0513 -1.2245 0.2872 9 7 1.3750 -2.3597 -0.3625 10 6 0.2558 -2.3261 -1.3125 11 6 0.5865 -3.2400 -2.4987 12 6 1.0071 -4.6116 -1.9619 13 6 -0.0869 -5.6589 -1.7560 14 6 0.9079 -5.8065 -2.9093 15 1 0.5406 -5.6196 -3.9184 16 7 1.9298 -6.8497 -2.7920 17 6 2.2186 -7.6322 -3.8505 18 8 1.6323 -7.4732 -4.9002 19 6 3.2703 -8.7050 -3.7300 20 7 3.3959 -9.4114 -5.0072 21 6 4.5341 -9.5768 -5.7150 22 6 4.2277 -10.2818 -6.8293 23 17 5.3403 -10.7612 -8.0728 24 6 2.8558 -10.5557 -6.8016 25 7 2.3578 -10.0394 -5.7073 26 6 2.1676 -4.5896 -0.9622 27 6 1.8055 -3.6488 0.1935 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6510 -2.6790 -0.8213 30 1 0.1081 -1.3061 -1.6672 31 1 -0.2938 -3.3497 -3.1320 32 1 1.4033 -2.8076 -3.0765 33 1 0.0190 -6.3378 -0.9098 34 1 -1.1092 -5.3750 -2.0061 35 1 2.3986 -6.9771 -1.9524 36 1 4.2259 -8.2493 -3.4707 37 1 2.9814 -9.4111 -2.9515 38 1 5.5132 -9.2128 -5.4407 39 1 2.3041 -11.1028 -7.5517 40 1 3.0696 -4.2299 -1.4573 41 1 2.3363 -5.5948 -0.5760 42 1 2.6778 -3.4993 0.8297 43 1 0.9947 -4.0836 0.7780 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016853955.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:10 Heat of formation + Delta-G solvation = 70.415302 kcal Electronic energy + Delta-G solvation = -26246.424610 eV Core-core repulsion = 22355.162993 eV Total energy + Delta-G solvation = -3891.261617 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.32933 -41.05676 -39.68627 -37.35678 -37.12889 -34.68989 -34.21502 -33.29236 -31.66954 -31.06196 -30.02216 -28.42593 -26.22762 -24.09675 -23.75540 -22.83382 -22.21941 -22.01947 -21.38619 -19.81174 -18.76995 -18.40331 -18.12000 -17.16647 -16.76535 -16.63905 -15.95442 -15.66800 -15.47705 -15.35150 -15.29318 -14.98109 -14.73415 -14.61810 -14.23595 -14.16233 -13.78516 -13.53191 -13.27112 -13.09983 -12.88225 -12.69045 -12.55710 -12.52766 -12.34940 -12.28260 -12.03129 -11.77520 -11.49514 -11.39906 -11.30325 -11.20456 -10.75540 -10.48991 -10.45242 -9.70117 -9.42074 -8.61789 -7.85811 -5.31799 0.67819 0.97066 1.44966 1.46519 1.49367 1.55450 1.61763 1.75786 2.05206 2.51837 2.93211 3.29030 3.48219 3.63607 3.67478 3.80624 3.86488 3.87796 3.97759 4.07142 4.13522 4.16028 4.50866 4.53910 4.60860 4.62731 4.73811 4.84758 4.89973 4.93943 5.04472 5.09157 5.17321 5.31520 5.34417 5.39441 5.46432 5.56479 5.66261 5.77169 5.78336 6.41627 6.46604 6.52564 7.16176 7.16851 7.89959 8.40431 9.19068 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.023273 B = 0.001956 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.817474 B =14311.949765 C =14829.300069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.052 4.052 3 Si 0.963 3.037 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.261 4.261 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.181 3.819 11 C -0.096 4.096 12 C -0.111 4.111 13 C -0.171 4.171 14 C 0.088 3.912 15 H 0.111 0.889 16 N -0.679 5.679 17 C 0.498 3.502 18 O -0.567 6.567 19 C 0.117 3.883 20 N -0.361 5.361 21 C 0.083 3.917 22 C -0.204 4.204 23 Cl -0.041 7.041 24 C 0.051 3.949 25 N -0.299 5.299 26 C -0.081 4.081 27 C 0.143 3.857 28 H 0.249 0.751 29 H -0.002 1.002 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.419 0.581 36 H 0.178 0.822 37 H 0.150 0.850 38 H 0.222 0.778 39 H 0.203 0.797 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.057 0.943 43 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.962 -23.411 -7.716 26.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.248 4.248 3 Si 0.792 3.208 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.331 5.331 10 C 0.055 3.945 11 C -0.135 4.135 12 C -0.113 4.113 13 C -0.209 4.209 14 C -0.018 4.018 15 H 0.129 0.871 16 N -0.331 5.331 17 C 0.284 3.716 18 O -0.445 6.445 19 C -0.006 4.006 20 N -0.143 5.143 21 C -0.064 4.064 22 C -0.242 4.242 23 Cl -0.013 7.013 24 C -0.136 4.136 25 N -0.119 5.119 26 C -0.120 4.120 27 C 0.017 3.983 28 H 0.058 0.942 29 H 0.016 0.984 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.258 0.742 36 H 0.195 0.805 37 H 0.167 0.833 38 H 0.239 0.761 39 H 0.220 0.780 40 H 0.078 0.922 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 9.486 -22.973 -7.693 26.018 hybrid contribution 0.692 1.229 -0.317 1.445 sum 10.178 -21.745 -8.010 25.310 Atomic orbital electron populations 1.70174 1.06685 1.25833 1.55316 1.25794 0.95971 1.01534 1.01479 0.85403 0.77625 0.79470 0.78338 1.20645 1.22303 1.19887 1.19480 0.93123 0.86284 1.40263 0.91517 1.44232 1.37822 1.02554 1.48540 1.20504 0.88174 0.97518 0.88304 1.21632 0.99731 0.94268 0.97882 1.21800 0.99488 0.90105 0.99905 1.23611 0.95640 1.01445 1.00201 1.21523 0.93514 0.90718 0.96083 0.87142 1.45144 1.39662 1.33371 1.14947 1.21174 0.84224 0.82693 0.83487 1.90791 1.53138 1.70465 1.30099 1.21940 1.02330 0.93637 0.82728 1.48051 1.05374 1.42040 1.18812 1.22846 0.93656 0.98371 0.91484 1.20914 0.91988 1.14440 0.96872 1.98325 1.60688 1.91081 1.51192 1.24264 0.92931 0.99640 0.96804 1.77575 1.12507 1.14005 1.07831 1.21467 0.95524 0.99840 0.95203 1.21043 0.97233 0.85886 0.94101 0.94207 0.98364 0.93015 0.92055 0.93382 0.86742 0.88773 0.74184 0.80485 0.83285 0.76125 0.78006 0.92154 0.88951 0.92480 0.96512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 11.23 21.65 0.24 -54.78 16 2 C -0.05 -2.90 4.88 84.86 0.41 -2.48 16 3 Si 0.96 44.40 29.59 68.60 2.03 46.43 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 7 C -0.26 -14.00 9.54 84.03 0.80 -13.20 16 8 H 0.07 3.45 7.89 -2.91 -0.02 3.43 16 9 N -0.61 -29.37 2.94 -698.89 -2.05 -31.42 16 10 C 0.18 8.58 5.40 86.43 0.47 9.05 16 11 C -0.10 -3.56 5.83 30.77 0.18 -3.38 16 12 C -0.11 -3.23 1.94 -52.17 -0.10 -3.33 16 13 C -0.17 -4.23 9.86 30.55 0.30 -3.93 16 14 C 0.09 2.20 6.14 44.94 0.28 2.48 16 15 H 0.11 3.34 7.40 -2.39 -0.02 3.32 16 16 N -0.68 -11.90 5.34 -442.78 -2.37 -14.27 16 17 C 0.50 10.02 7.86 87.66 0.69 10.71 16 18 O -0.57 -18.17 15.29 -3.03 -0.05 -18.22 16 19 C 0.12 1.16 6.99 85.64 0.60 1.76 16 20 N -0.36 -6.19 3.40 -351.67 -1.19 -7.39 16 21 C 0.08 1.14 11.43 83.54 0.95 2.10 16 22 C -0.20 -3.50 6.65 22.02 0.15 -3.35 16 23 Cl -0.04 -0.63 29.30 -2.72 -0.08 -0.71 16 24 C 0.05 1.02 12.02 85.25 1.02 2.04 16 25 N -0.30 -7.17 11.66 -56.98 -0.66 -7.84 16 26 C -0.08 -2.21 5.37 30.77 0.17 -2.05 16 27 C 0.14 5.32 6.52 86.43 0.56 5.89 16 28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.00 -0.09 8.14 -2.38 -0.02 -0.11 16 30 H 0.05 2.83 5.93 -2.39 -0.01 2.82 16 31 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 32 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.42 4.29 7.12 -92.71 -0.66 3.63 16 36 H 0.18 0.04 8.07 -2.39 -0.02 0.02 16 37 H 0.15 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.22 1.06 8.06 -2.91 -0.02 1.04 16 39 H 0.20 3.07 8.06 -2.91 -0.02 3.05 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.09 1.66 6.75 -2.39 -0.02 1.65 16 42 H 0.06 2.07 7.92 -2.39 -0.02 2.05 16 43 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -78.96 371.10 2.73 -76.23 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.38 Total: 9.67 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: 6.48 Total: 2.28 kcal Atomic # 7 Polarization: -109.65 SS G_CDS: -6.03 Total: -115.69 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.05 Total: -18.22 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -0.08 Total: -0.71 kcal Total: -78.96 2.73 -76.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016853955.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.642 kcal (2) G-P(sol) polarization free energy of solvation -78.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds