Wall clock time and date at job start Tue Mar 31 2020 20:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99611 * 2 1 4 4 H 1.48508 * 109.47121 * 239.99525 * 3 2 1 5 5 H 1.48505 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47498 * 119.99460 * 3 2 1 7 7 C 1.38806 * 120.00489 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00237 * 179.27175 * 7 2 1 9 9 N 1.36936 * 119.99935 * 359.27114 * 7 2 1 10 10 C 1.46981 * 120.77529 * 216.46990 * 9 7 2 11 11 C 1.53099 * 108.61456 * 234.34195 * 10 9 7 12 12 C 1.53640 * 109.52102 * 304.75129 * 11 10 9 13 13 H 1.09004 * 110.78348 * 299.03584 * 12 11 10 14 14 C 1.52703 * 109.57247 * 60.55494 * 12 11 10 15 15 H 1.09000 * 108.45638 * 180.81531 * 14 12 11 16 16 C 1.52853 * 109.43915 * 61.70918 * 14 12 11 17 17 C 1.53106 * 109.34938 * 61.89354 * 16 14 12 18 18 C 1.53140 * 109.48310 * 299.34978 * 17 16 14 19 19 N 1.46952 * 109.01886 * 54.07440 * 18 17 16 20 20 C 1.34777 * 120.84120 * 125.95536 * 19 18 17 21 21 O 1.21742 * 120.00205 * 3.70760 * 20 19 18 22 22 C 1.46342 * 119.99920 * 183.70522 * 20 19 18 23 23 C 1.36736 * 125.43423 * 135.93635 * 22 20 19 24 24 C 1.37345 * 113.33106 * 179.97438 * 23 22 20 25 25 C 1.34212 * 115.04365 * 359.97438 * 24 23 22 26 26 F 1.35103 * 124.53848 * 180.02562 * 25 24 23 27 27 S 1.70614 * 110.91888 * 359.97438 * 25 24 23 28 28 C 1.46893 * 120.77232 * 36.49585 * 9 7 2 29 29 H 0.97000 * 120.00716 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.60950 * 354.08253 * 10 9 7 31 31 H 1.08995 * 109.61145 * 114.60803 * 10 9 7 32 32 H 1.09000 * 109.44930 * 64.69102 * 11 10 9 33 33 H 1.09005 * 109.44809 * 184.64023 * 11 10 9 34 34 H 1.09003 * 109.49185 * 301.93117 * 16 14 12 35 35 H 1.08997 * 109.49075 * 181.85843 * 16 14 12 36 36 H 1.09002 * 109.47147 * 179.34364 * 17 16 14 37 37 H 1.09001 * 109.46962 * 59.35296 * 17 16 14 38 38 H 1.09000 * 109.54521 * 294.22210 * 18 17 16 39 39 H 1.08994 * 109.55541 * 173.94032 * 18 17 16 40 40 H 1.07994 * 123.33722 * 359.69424 * 23 22 20 41 41 H 1.07991 * 122.48335 * 179.97438 * 24 23 22 42 42 H 1.08997 * 109.52128 * 6.71471 * 28 9 7 43 43 H 1.08998 * 109.56149 * 246.57253 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2849 2.7465 -0.0006 6 1 3.1037 1.6967 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2020 -0.0113 9 7 1.3258 -2.3879 0.0162 10 6 1.8376 -3.5418 0.7691 11 6 1.9367 -4.7394 -0.1796 12 6 0.5708 -4.9871 -0.8380 13 1 -0.1853 -5.2143 -0.0865 14 6 0.1573 -3.7539 -1.6380 15 1 -0.8188 -3.9435 -2.0845 16 6 1.1784 -3.5010 -2.7470 17 6 1.1984 -4.6985 -3.7008 18 6 1.6017 -5.9588 -2.9299 19 7 0.7108 -6.1176 -1.7720 20 6 0.0346 -7.2663 -1.5729 21 8 0.2090 -8.2125 -2.3189 22 6 -0.9092 -7.3763 -0.4599 23 6 -2.1561 -7.9329 -0.5300 24 6 -2.8318 -7.9059 0.6655 25 6 -2.1615 -7.3458 1.6844 26 9 -2.6428 -7.2194 2.9405 27 16 -0.6197 -6.8161 1.1813 28 6 0.0632 -2.5366 -0.7196 29 1 -0.4851 0.8400 -0.0004 30 1 2.8245 -3.3091 1.1689 31 1 1.1553 -3.7776 1.5857 32 1 2.6781 -4.5310 -0.9510 33 1 2.2364 -5.6239 0.3825 34 1 2.1672 -3.3692 -2.3078 35 1 0.9019 -2.6020 -3.2978 36 1 1.9176 -4.5152 -4.4991 37 1 0.2064 -4.8374 -4.1305 38 1 2.6318 -5.8624 -2.5867 39 1 1.5126 -6.8287 -3.5805 40 1 -2.5705 -8.3483 -1.4366 41 1 -3.8287 -8.3057 0.7773 42 1 -0.1177 -1.6430 -1.3169 43 1 -0.7562 -2.6752 -0.0143 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021745921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:34 Heat of formation + Delta-G solvation = -15.796601 kcal Electronic energy + Delta-G solvation = -28407.045287 eV Core-core repulsion = 24494.168986 eV Total energy + Delta-G solvation = -3912.876301 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.121 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.17899 -40.49991 -38.52344 -37.34314 -35.38300 -33.03754 -32.41732 -30.64406 -29.60973 -29.19404 -25.90472 -25.29565 -24.42618 -22.66196 -22.34255 -21.66514 -20.48891 -19.69101 -18.54548 -17.87597 -17.09738 -16.84748 -16.26385 -16.04931 -15.58784 -15.21255 -14.99984 -14.60750 -14.53411 -14.11798 -13.76266 -13.51476 -13.30869 -13.13301 -12.86290 -12.73500 -12.60033 -12.40837 -12.14814 -12.10804 -11.60928 -11.21762 -10.99980 -10.90034 -10.86872 -10.70978 -10.52300 -10.25623 -10.17237 -10.03620 -9.98248 -9.75883 -9.58101 -8.86526 -8.66147 -8.53795 -8.35728 -6.61468 -5.86469 -3.39989 0.28075 0.86163 1.44187 2.15429 2.84461 3.14613 3.33413 3.39278 3.39904 4.16547 4.41889 4.44973 4.95370 5.09975 5.14882 5.20375 5.22811 5.27393 5.36263 5.41546 5.47267 5.56208 5.59365 5.71699 5.78857 5.89380 5.96352 6.01739 6.11241 6.15441 6.25284 6.29270 6.32358 6.51790 6.62528 6.69506 6.70620 6.85142 6.97824 7.26292 7.45169 7.65564 7.72995 8.10996 8.44685 9.16766 9.74751 10.35816 11.21239 Molecular weight = 338.12amu Principal moments of inertia in cm(-1) A = 0.013503 B = 0.004326 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.100899 B = 6471.397797 C = 7821.121186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.013 3.987 3 Si 0.902 3.098 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.587 5.587 10 C 0.147 3.853 11 C -0.145 4.145 12 C 0.135 3.865 13 H 0.089 0.911 14 C -0.116 4.116 15 H 0.057 0.943 16 C -0.103 4.103 17 C -0.135 4.135 18 C 0.115 3.885 19 N -0.596 5.596 20 C 0.591 3.409 21 O -0.538 6.538 22 C -0.256 4.256 23 C -0.049 4.049 24 C -0.182 4.182 25 C -0.041 4.041 26 F -0.101 7.101 27 S 0.261 5.739 28 C 0.178 3.822 29 H 0.256 0.744 30 H 0.059 0.941 31 H 0.020 0.980 32 H 0.071 0.929 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.158 0.842 41 H 0.155 0.845 42 H 0.098 0.902 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.142 -13.342 -1.398 13.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.186 4.186 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.310 5.310 10 C 0.019 3.981 11 C -0.185 4.185 12 C 0.032 3.968 13 H 0.107 0.893 14 C -0.137 4.137 15 H 0.075 0.925 16 C -0.140 4.140 17 C -0.173 4.173 18 C -0.007 4.007 19 N -0.327 5.327 20 C 0.377 3.623 21 O -0.418 6.418 22 C -0.377 4.377 23 C -0.081 4.081 24 C -0.215 4.215 25 C -0.179 4.179 26 F -0.080 7.080 27 S 0.527 5.473 28 C 0.051 3.949 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.038 0.962 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.176 0.824 41 H 0.172 0.828 42 H 0.116 0.884 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.984 -12.960 -0.977 13.034 hybrid contribution -1.146 0.231 -0.280 1.202 sum -2.130 -12.729 -1.257 12.967 Atomic orbital electron populations 1.69879 1.05349 1.25749 1.53706 1.25310 0.95460 0.98291 0.99524 0.86395 0.78946 0.83340 0.78160 1.20915 1.21612 1.20823 1.19031 0.90142 0.82946 1.46373 0.92009 1.43907 1.24442 1.08759 1.53864 1.20900 0.98115 0.87047 0.91999 1.22580 0.96050 0.99513 1.00323 1.21951 0.98512 0.85498 0.90838 0.89338 1.22002 0.97847 0.96501 0.97355 0.92494 1.21435 1.00888 0.96262 0.95454 1.21982 1.01671 0.95283 0.98367 1.21595 0.92975 0.99086 0.86999 1.48461 1.43923 1.13640 1.26689 1.16852 0.79519 0.82803 0.83092 1.90815 1.65784 1.37650 1.47512 1.24475 1.01648 1.13315 0.98250 1.20299 0.91785 0.97285 0.98775 1.20201 1.03506 1.06006 0.91776 1.22308 1.01742 1.09561 0.84262 1.91528 1.87142 1.94117 1.35235 1.84049 1.10271 1.52481 1.00496 1.20793 0.87453 0.94196 0.92441 0.93384 0.92203 0.96173 0.91025 0.93064 0.90534 0.91815 0.91117 0.92110 0.91258 0.89478 0.82437 0.82754 0.88382 0.96335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 10.86 55.49 0.60 -24.00 16 2 C 0.01 0.35 5.26 -17.43 -0.09 0.26 16 3 Si 0.90 20.60 29.55 -169.99 -5.02 15.58 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.26 -6.44 9.55 -15.06 -0.14 -6.58 16 8 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 9 N -0.59 -13.24 2.63 -172.62 -0.45 -13.69 16 10 C 0.15 2.76 6.52 -3.73 -0.02 2.74 16 11 C -0.14 -2.28 5.03 -26.35 -0.13 -2.42 16 12 C 0.14 2.12 2.14 -67.31 -0.14 1.98 16 13 H 0.09 1.39 3.94 -28.91 -0.11 1.28 16 14 C -0.12 -2.02 2.43 -90.96 -0.22 -2.24 16 15 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.10 -1.67 4.86 -26.75 -0.13 -1.80 16 17 C -0.13 -1.80 6.08 -26.60 -0.16 -1.97 16 18 C 0.12 1.58 5.94 -3.72 -0.02 1.55 16 19 N -0.60 -8.91 2.66 -166.50 -0.44 -9.35 16 20 C 0.59 9.23 7.54 -13.00 -0.10 9.13 16 21 O -0.54 -9.61 16.53 5.15 0.09 -9.52 16 22 C -0.26 -3.53 5.54 -36.87 -0.20 -3.73 16 23 C -0.05 -0.59 10.22 -40.45 -0.41 -1.00 16 24 C -0.18 -2.02 10.16 -41.33 -0.42 -2.44 16 25 C -0.04 -0.51 8.10 29.31 0.24 -0.28 16 26 F -0.10 -1.30 17.32 2.25 0.04 -1.26 16 27 S 0.26 3.33 19.80 -107.50 -2.13 1.21 16 28 C 0.18 3.85 4.61 -3.94 -0.02 3.83 16 29 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.06 1.11 7.94 -51.93 -0.41 0.70 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.16 5.33 -51.93 -0.28 0.88 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.35 6.16 -51.93 -0.32 1.03 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.90 7.25 -51.93 -0.38 0.52 16 39 H 0.09 1.19 7.03 -51.93 -0.37 0.83 16 40 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.10 2.43 6.15 -51.93 -0.32 2.11 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 347.69 15.07 5.24 5.24 Total: -1.00 -28.14 347.69 -9.60 -37.75 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.53 Total: 1.02 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -1.99 Total: -2.97 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.29 Total: -47.04 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.09 Total: -9.52 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Atomic # 16 Polarization: 3.33 SS G_CDS: -2.13 Total: 1.21 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.14 -9.60 -37.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021745921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.950 kcal (2) G-P(sol) polarization free energy of solvation -28.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds