Wall clock time and date at job start Tue Mar 31 2020 20:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99731 * 2 1 4 4 H 1.48504 * 109.46754 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47048 * 299.99712 * 3 2 1 6 6 H 1.48500 * 109.47064 * 60.00246 * 3 2 1 7 7 C 1.38808 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99692 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00453 * 0.02562 * 7 2 1 10 10 C 1.47423 * 125.64562 * 345.81867 * 9 7 2 11 11 C 1.54910 * 104.83254 * 204.14812 * 10 9 7 12 12 C 1.55160 * 101.58353 * 322.99508 * 11 10 9 13 13 C 1.47018 * 125.64874 * 165.84834 * 9 7 2 14 14 H 1.09004 * 110.01240 * 59.43073 * 13 9 7 15 15 C 1.53003 * 109.88345 * 298.33377 * 13 9 7 16 16 N 1.46498 * 109.47338 * 176.74319 * 15 13 9 17 17 C 1.34776 * 120.00126 * 174.92540 * 16 15 13 18 18 O 1.21595 * 119.99916 * 359.73066 * 17 16 15 19 19 C 1.47384 * 119.99630 * 179.97438 * 17 16 15 20 20 C 1.41393 * 126.42500 * 269.74703 * 19 17 16 21 21 Cl 1.73599 * 126.00411 * 0.02562 * 20 19 17 22 22 N 1.30537 * 107.98919 * 179.97438 * 20 19 17 23 23 N 1.39924 * 108.89217 * 0.02562 * 22 20 19 24 24 H 0.97011 * 125.73758 * 179.97438 * 23 22 20 25 25 C 1.34230 * 108.52974 * 359.74986 * 23 22 20 26 26 C 1.50698 * 126.28782 * 180.24709 * 25 23 22 27 27 C 1.53007 * 117.49766 * 8.92109 * 26 25 23 28 28 C 1.53003 * 117.49548 * 300.26429 * 26 25 23 29 29 H 0.97003 * 120.00352 * 359.97438 * 1 2 3 30 30 H 1.09009 * 110.36382 * 85.31663 * 10 9 7 31 31 H 1.08998 * 110.46393 * 323.03725 * 10 9 7 32 32 H 1.08994 * 111.00821 * 204.91822 * 11 10 9 33 33 H 1.09007 * 110.99966 * 81.06982 * 11 10 9 34 34 H 1.08991 * 110.71874 * 277.13701 * 12 11 10 35 35 H 1.08998 * 110.71772 * 153.86140 * 12 11 10 36 36 H 1.08997 * 109.46900 * 56.74328 * 15 13 9 37 37 H 1.09000 * 109.46967 * 296.74371 * 15 13 9 38 38 H 0.97010 * 119.99895 * 354.93230 * 16 15 13 39 39 H 1.08997 * 115.55584 * 154.59640 * 26 25 23 40 40 H 1.08998 * 117.49579 * 0.02562 * 27 26 25 41 41 H 1.08994 * 117.49759 * 145.02138 * 27 26 25 42 42 H 1.08999 * 117.50344 * 214.97485 * 28 26 25 43 43 H 1.09004 * 117.50036 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1100 -2.5513 0.2935 11 6 -0.2529 -4.0179 0.7716 12 6 0.7658 -4.7451 -0.1454 13 6 1.9005 -3.7093 -0.2910 14 1 2.6994 -3.9328 0.4161 15 6 2.4481 -3.7349 -1.7195 16 7 3.0876 -5.0280 -1.9744 17 6 3.5536 -5.3184 -3.2052 18 8 3.4389 -4.5090 -4.1053 19 6 4.1975 -6.6192 -3.4613 20 6 5.5746 -6.9137 -3.3347 21 17 6.8153 -5.8019 -2.8467 22 7 5.7489 -8.1688 -3.6483 23 7 4.5113 -8.7277 -3.9856 24 1 4.3596 -9.6465 -4.2575 25 6 3.5682 -7.7801 -3.8650 26 6 2.0938 -7.9509 -4.1252 27 6 1.5787 -9.3715 -4.3655 28 6 1.6699 -8.3826 -5.5305 29 1 -0.4851 0.8400 0.0004 30 1 -0.7020 -2.3865 -0.6068 31 1 -0.4188 -1.8638 1.0809 32 1 -1.2642 -4.3873 0.6022 33 1 0.0265 -4.1157 1.8207 34 1 0.3208 -4.9686 -1.1149 35 1 1.1324 -5.6545 0.3307 36 1 3.1804 -2.9370 -1.8422 37 1 1.6299 -3.5888 -2.4248 38 1 3.1755 -5.6754 -1.2572 39 1 1.4392 -7.2618 -3.5916 40 1 2.3064 -10.1824 -4.3350 41 1 0.5853 -9.6168 -3.9903 42 1 0.7362 -7.9780 -5.9212 43 1 2.4575 -8.5427 -6.2669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027929593.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:55 Heat of formation + Delta-G solvation = 80.846219 kcal Electronic energy + Delta-G solvation = -27002.909850 eV Core-core repulsion = 23112.100552 eV Total energy + Delta-G solvation = -3890.809298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89080 -39.07638 -37.64337 -37.52656 -36.88720 -34.15605 -32.47544 -31.75630 -30.94208 -29.57345 -28.51238 -25.14768 -24.49394 -23.75331 -22.97305 -22.15837 -21.59130 -20.30012 -19.86162 -19.35899 -18.17999 -16.89809 -16.33866 -16.21809 -15.94057 -15.48722 -15.29900 -14.75091 -14.68618 -14.41149 -13.98972 -13.82853 -13.25998 -13.02900 -12.62370 -12.47442 -12.11516 -12.07709 -11.89303 -11.86394 -11.71969 -11.35694 -11.29932 -11.18186 -10.93061 -10.84470 -10.79024 -10.23273 -10.09583 -9.96409 -9.85019 -9.75482 -9.67580 -9.63377 -8.94776 -8.64645 -8.55410 -6.83195 -5.75578 -3.11982 1.15887 1.23079 1.92306 2.52921 2.76935 3.30498 3.40926 3.47997 3.49706 3.58475 3.89230 4.20948 4.38536 4.50025 4.58961 4.64437 5.02008 5.06968 5.23053 5.34502 5.37140 5.41156 5.50478 5.51241 5.58773 5.62535 5.67438 5.81372 6.07907 6.14883 6.24368 6.46387 6.54795 6.61125 6.62925 6.72598 6.83218 6.96069 7.07400 7.52551 7.61652 7.80572 7.82303 8.26453 8.50760 9.18806 9.79346 10.46112 11.36364 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012736 B = 0.003282 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.029829 B = 8529.361587 C = 9849.485369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.001 4.001 3 Si 0.910 3.090 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.232 4.232 8 H 0.077 0.923 9 N -0.589 5.589 10 C 0.172 3.828 11 C -0.149 4.149 12 C -0.125 4.125 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.109 3.891 16 N -0.711 5.711 17 C 0.589 3.411 18 O -0.528 6.528 19 C -0.255 4.255 20 C 0.160 3.840 21 Cl 0.025 6.975 22 N -0.275 5.275 23 N -0.449 5.449 24 H 0.445 0.555 25 C 0.174 3.826 26 C -0.107 4.107 27 C -0.170 4.170 28 C -0.156 4.156 29 H 0.253 0.747 30 H 0.025 0.975 31 H 0.073 0.927 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.139 0.861 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.949 -22.102 -6.238 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.198 4.198 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.361 4.361 8 H 0.095 0.905 9 N -0.313 5.313 10 C 0.047 3.953 11 C -0.188 4.188 12 C -0.163 4.163 13 C 0.044 3.956 14 H 0.056 0.944 15 C -0.016 4.016 16 N -0.362 5.362 17 C 0.372 3.628 18 O -0.404 6.404 19 C -0.271 4.271 20 C -0.033 4.033 21 Cl 0.053 6.947 22 N -0.101 5.101 23 N -0.158 5.158 24 H 0.291 0.709 25 C 0.042 3.958 26 C -0.126 4.126 27 C -0.208 4.208 28 C -0.194 4.194 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.157 0.843 40 H 0.111 0.889 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.788 -22.017 -6.927 23.572 hybrid contribution 0.117 0.844 0.223 0.881 sum 4.905 -21.173 -6.704 22.744 Atomic orbital electron populations 1.69946 1.05012 1.25160 1.56086 1.24895 0.95667 0.97840 1.01434 0.86083 0.78998 0.83705 0.77233 1.20328 1.21600 1.21748 1.19044 0.90466 0.82155 1.44400 0.90532 1.44484 1.06069 1.00893 1.79840 1.21456 0.84754 0.90197 0.98847 1.23010 0.97460 0.99658 0.98626 1.22600 0.97086 0.96988 0.99662 1.21127 0.94466 0.88001 0.92054 0.94443 1.22283 0.97234 0.82761 0.99327 1.46125 1.59559 1.19815 1.10692 1.17085 0.78062 0.84619 0.83054 1.90811 1.56353 1.49026 1.44160 1.19853 0.91931 0.96090 1.19222 1.22582 0.89624 0.90821 1.00266 1.98438 1.50868 1.56475 1.88943 1.77166 1.01705 1.08304 1.22907 1.45759 1.03658 1.12195 1.54185 0.70867 1.20361 0.91023 0.87719 0.96691 1.20744 0.88568 1.00658 1.02679 1.23083 1.03523 0.91278 1.02868 1.23129 1.04020 1.01861 0.90362 0.93689 0.95662 0.90893 0.92402 0.92331 0.91865 0.92443 0.91316 0.91458 0.77041 0.84324 0.88886 0.86975 0.87003 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.56 55.49 0.59 -25.86 16 2 C 0.00 -0.03 5.47 -17.43 -0.10 -0.13 16 3 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 7 C -0.23 -6.31 9.75 -15.06 -0.15 -6.46 16 8 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 9 N -0.59 -14.38 3.13 -162.57 -0.51 -14.89 16 10 C 0.17 4.03 5.42 -2.53 -0.01 4.01 16 11 C -0.15 -2.64 7.08 -24.58 -0.17 -2.82 16 12 C -0.13 -2.00 6.14 -24.89 -0.15 -2.15 16 13 C 0.15 2.93 3.21 -66.95 -0.21 2.72 16 14 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 15 C 0.11 2.07 5.08 -4.04 -0.02 2.05 16 16 N -0.71 -10.81 5.34 -61.40 -0.33 -11.14 16 17 C 0.59 9.65 7.31 -12.54 -0.09 9.56 16 18 O -0.53 -10.91 17.10 5.28 0.09 -10.82 16 19 C -0.26 -3.48 5.88 -105.04 -0.62 -4.10 16 20 C 0.16 2.15 7.89 -16.90 -0.13 2.02 16 21 Cl 0.02 0.33 29.19 -51.86 -1.51 -1.18 16 22 N -0.28 -3.34 12.64 33.18 0.42 -2.92 16 23 N -0.45 -4.01 7.17 33.86 0.24 -3.77 16 24 H 0.45 2.32 7.95 -182.72 -1.45 0.86 16 25 C 0.17 1.80 6.80 -81.60 -0.55 1.24 16 26 C -0.11 -0.86 6.02 -91.77 -0.55 -1.42 16 27 C -0.17 -0.84 10.14 -26.69 -0.27 -1.11 16 28 C -0.16 -1.00 10.24 -26.69 -0.27 -1.28 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.03 0.64 8.07 -51.92 -0.42 0.23 16 31 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.98 7.79 -51.93 -0.40 0.57 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 1.50 7.90 -51.93 -0.41 1.09 16 37 H 0.07 1.41 8.06 -51.93 -0.42 0.99 16 38 H 0.40 4.99 8.35 -40.82 -0.34 4.65 16 39 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.09 0.31 7.16 -51.93 -0.37 -0.07 16 41 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 375.88 15.07 5.66 5.66 Total: -1.00 -33.26 375.88 -10.79 -44.05 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.10 Total: 1.66 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -3.31 Total: 2.14 kcal Atomic # 7 Polarization: -58.99 SS G_CDS: 0.41 Total: -58.58 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: 0.33 SS G_CDS: -1.51 Total: -1.18 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.26 -10.79 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027929593.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.895 kcal (2) G-P(sol) polarization free energy of solvation -33.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds