Wall clock time and date at job start Tue Mar 31 2020 20:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86797 * 119.99699 * 2 1 4 4 H 1.48503 * 109.47063 * 264.66848 * 3 2 1 5 5 H 1.48500 * 109.47266 * 24.66855 * 3 2 1 6 6 H 1.48496 * 109.47036 * 144.67058 * 3 2 1 7 7 C 1.38810 * 120.00126 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99887 * 339.46364 * 7 2 1 9 9 N 1.36936 * 120.00162 * 159.46250 * 7 2 1 10 10 C 1.47424 * 125.64556 * 335.94765 * 9 7 2 11 11 C 1.54913 * 104.83178 * 204.14775 * 10 9 7 12 12 C 1.55155 * 101.58043 * 322.99141 * 11 10 9 13 13 C 1.47013 * 125.64798 * 155.96967 * 9 7 2 14 14 H 1.09004 * 110.01232 * 59.43292 * 13 9 7 15 15 C 1.52998 * 109.88584 * 298.33877 * 13 9 7 16 16 N 1.46493 * 109.47037 * 62.05136 * 15 13 9 17 17 C 1.34779 * 119.99928 * 185.94993 * 16 15 13 18 18 O 1.21566 * 120.00180 * 359.97438 * 17 16 15 19 19 C 1.47672 * 119.99745 * 180.02562 * 17 16 15 20 20 N 1.31820 * 126.46486 * 0.02608 * 19 17 16 21 21 N 1.28463 * 110.14063 * 179.97438 * 20 19 17 22 22 H 0.97001 * 124.94216 * 180.02562 * 21 20 19 23 23 C 1.35645 * 110.12814 * 0.02562 * 21 20 19 24 24 C 1.50700 * 126.43155 * 179.73586 * 23 21 20 25 25 C 1.53000 * 117.50360 * 8.64379 * 24 23 21 26 26 C 1.52999 * 117.49845 * 300.02017 * 24 23 21 27 27 C 1.35460 * 107.13229 * 359.97438 * 23 21 20 28 28 Cl 1.73598 * 127.23623 * 179.97438 * 27 23 21 29 29 H 0.96999 * 120.00068 * 359.97438 * 1 2 3 30 30 H 1.08995 * 110.36882 * 85.31202 * 10 9 7 31 31 H 1.09004 * 110.46436 * 323.03147 * 10 9 7 32 32 H 1.08997 * 111.00223 * 204.91505 * 11 10 9 33 33 H 1.09004 * 111.00334 * 81.06669 * 11 10 9 34 34 H 1.08994 * 110.72315 * 277.13545 * 12 11 10 35 35 H 1.09000 * 110.71986 * 153.86512 * 12 11 10 36 36 H 1.08998 * 109.46901 * 302.05354 * 15 13 9 37 37 H 1.08999 * 109.47427 * 182.05850 * 15 13 9 38 38 H 0.97002 * 120.00375 * 5.95742 * 16 15 13 39 39 H 1.09007 * 115.54823 * 154.35232 * 24 23 21 40 40 H 1.09005 * 117.49406 * 0.02562 * 25 24 23 41 41 H 1.09001 * 117.49883 * 145.01818 * 25 24 23 42 42 H 1.09008 * 117.49968 * 214.97710 * 26 24 23 43 43 H 1.08997 * 117.49845 * 0.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6103 1.9814 -1.3941 5 1 1.3958 2.6826 0.5843 6 1 3.4869 1.4754 0.8096 7 6 2.0104 -1.2021 -0.0005 8 1 1.5218 -2.1079 0.3272 9 7 3.3144 -1.2396 -0.4166 10 6 3.9542 -0.2719 -1.3263 11 6 5.1393 -1.0446 -1.9574 12 6 5.6230 -1.9049 -0.7603 13 6 4.3082 -2.2518 -0.0304 14 1 3.9677 -3.2427 -0.3310 15 6 4.5279 -2.2144 1.4833 16 7 3.2743 -2.5416 2.1669 17 6 3.1958 -2.4530 3.5095 18 8 4.1655 -2.1022 4.1532 19 6 1.9322 -2.7834 4.1986 20 7 0.8095 -3.1764 3.6304 21 7 -0.0912 -3.3785 4.5238 22 1 -0.9974 -3.6729 4.3424 23 6 0.4092 -3.1205 5.7579 24 6 -0.3316 -3.2326 7.0654 25 6 -1.7220 -3.8706 7.0373 26 6 -1.5765 -2.3623 7.2489 27 6 1.6983 -2.7379 5.5938 28 17 2.8258 -2.2859 6.8340 29 1 -0.4850 0.8400 0.0004 30 1 4.3180 0.5905 -0.7679 31 1 3.2538 0.0454 -2.0990 32 1 5.9206 -0.3599 -2.2875 33 1 4.8011 -1.6747 -2.7801 34 1 6.2831 -1.3281 -0.1126 35 1 6.1196 -2.8096 -1.1113 36 1 4.8532 -1.2169 1.7786 37 1 5.2920 -2.9418 1.7576 38 1 2.5006 -2.8220 1.6533 39 1 0.2886 -3.4152 7.9430 40 1 -2.1006 -4.2097 6.0730 41 1 -2.0166 -4.4733 7.8964 42 1 -1.7756 -1.9727 8.2474 43 1 -1.8599 -1.7090 6.4238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027998312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:48 Heat of formation + Delta-G solvation = 86.844970 kcal Electronic energy + Delta-G solvation = -27427.857970 eV Core-core repulsion = 23537.308797 eV Total energy + Delta-G solvation = -3890.549173 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.68328 -38.99632 -37.78662 -37.39448 -36.30137 -33.86382 -32.62225 -31.67746 -30.55807 -29.95995 -29.20299 -25.34603 -24.26707 -23.71902 -22.79923 -22.43444 -21.08165 -20.95256 -19.73595 -19.06554 -17.93268 -17.10812 -16.35964 -16.07981 -15.83252 -15.45600 -15.11068 -15.04085 -14.64092 -14.21863 -14.05344 -13.36003 -13.30364 -12.96099 -12.66181 -12.57174 -12.49249 -11.94507 -11.92277 -11.65372 -11.31771 -11.28698 -11.17640 -11.12541 -10.91186 -10.87020 -10.66707 -10.48668 -10.41966 -10.03001 -9.94464 -9.52844 -9.38787 -9.21723 -8.67971 -8.60070 -8.25219 -7.03045 -5.97073 -3.30566 1.66842 1.92686 2.15681 3.00356 3.35600 3.49914 3.52338 3.55044 3.67144 3.89265 4.21614 4.40828 4.54942 4.58318 4.69750 4.82203 4.93750 5.21231 5.24524 5.29041 5.31573 5.43479 5.47594 5.54802 5.60476 5.67368 5.77325 5.85327 5.95721 6.05820 6.13051 6.16171 6.28054 6.35335 6.41765 6.67014 6.79635 6.87457 6.88663 7.14471 7.71321 7.80631 8.23790 8.32707 8.76447 8.86495 9.66908 10.17747 11.18239 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.003790 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.176219 B = 7386.001844 C = 8347.128733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.031 3.969 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.304 1.304 6 H -0.275 1.275 7 C -0.239 4.239 8 H 0.091 0.909 9 N -0.602 5.602 10 C 0.112 3.888 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.145 3.855 14 H 0.050 0.950 15 C 0.114 3.886 16 N -0.686 5.686 17 C 0.594 3.406 18 O -0.539 6.539 19 C 0.013 3.987 20 N -0.221 5.221 21 N -0.374 5.374 22 H 0.448 0.552 23 C 0.052 3.948 24 C -0.088 4.088 25 C -0.175 4.175 26 C -0.164 4.164 27 C -0.095 4.095 28 Cl -0.012 7.012 29 H 0.262 0.738 30 H 0.023 0.977 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.133 0.867 40 H 0.092 0.908 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.231 -8.712 10.693 13.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.168 4.168 3 Si 0.712 3.288 4 H -0.213 1.213 5 H -0.233 1.233 6 H -0.201 1.201 7 C -0.366 4.366 8 H 0.108 0.892 9 N -0.327 5.327 10 C -0.013 4.013 11 C -0.169 4.169 12 C -0.161 4.161 13 C 0.037 3.963 14 H 0.068 0.932 15 C -0.011 4.011 16 N -0.338 5.338 17 C 0.376 3.624 18 O -0.415 6.415 19 C -0.150 4.150 20 N -0.056 5.056 21 N -0.090 5.090 22 H 0.294 0.706 23 C -0.074 4.074 24 C -0.107 4.107 25 C -0.212 4.212 26 C -0.202 4.202 27 C -0.133 4.133 28 Cl 0.016 6.984 29 H 0.071 0.929 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.255 0.745 39 H 0.151 0.849 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.352 -8.547 10.190 13.304 hybrid contribution -0.130 1.142 0.601 1.298 sum 0.222 -7.405 10.791 13.089 Atomic orbital electron populations 1.69816 1.05554 1.26483 1.52850 1.25062 0.95093 0.97338 0.99323 0.86970 0.79443 0.84712 0.77706 1.21273 1.23252 1.20073 1.18424 0.83221 0.94590 1.40342 0.89189 1.44885 1.07624 1.28852 1.51366 1.21931 0.93696 0.92707 0.92926 1.22719 0.98046 0.98787 0.97372 1.22517 0.96533 0.99811 0.97278 1.21337 0.89744 0.94402 0.90799 0.93232 1.21975 0.85114 1.00287 0.93768 1.45912 1.16198 1.66179 1.05523 1.16748 0.84783 0.78296 0.82523 1.90767 1.36262 1.48328 1.66145 1.21990 0.94513 1.07591 0.90880 1.73863 0.97371 1.16298 1.18023 1.43171 1.13384 1.49786 1.02619 0.70581 1.20066 0.93135 1.06380 0.87836 1.20467 0.89912 1.06891 0.93461 1.23035 0.97995 0.96433 1.03780 1.23128 0.99436 0.93442 1.04173 1.20340 0.91533 1.11115 0.90276 1.98333 1.59154 1.90972 1.49927 0.92851 0.95923 0.92464 0.91746 0.91255 0.91323 0.91287 0.91679 0.92677 0.74454 0.84899 0.88909 0.87454 0.87510 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.97 55.49 0.78 -26.31 16 2 C 0.03 0.89 5.45 -17.43 -0.09 0.80 16 3 Si 0.88 22.98 24.33 -169.99 -4.14 18.84 16 4 H -0.29 -7.15 6.68 56.52 0.38 -6.77 16 5 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 6 H -0.28 -7.28 6.75 56.52 0.38 -6.90 16 7 C -0.24 -6.34 8.87 -15.06 -0.13 -6.47 16 8 H 0.09 2.50 6.55 -52.49 -0.34 2.15 16 9 N -0.60 -13.78 2.87 -162.57 -0.47 -14.25 16 10 C 0.11 2.38 4.73 -2.53 -0.01 2.37 16 11 C -0.13 -2.11 7.09 -24.58 -0.17 -2.28 16 12 C -0.12 -1.87 6.48 -24.89 -0.16 -2.04 16 13 C 0.14 2.70 3.34 -66.95 -0.22 2.48 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 15 C 0.11 2.19 5.18 -4.05 -0.02 2.17 16 16 N -0.69 -14.10 4.81 -61.31 -0.29 -14.39 16 17 C 0.59 12.53 7.82 -12.41 -0.10 12.43 16 18 O -0.54 -12.18 15.86 5.31 0.08 -12.09 16 19 C 0.01 0.25 7.13 -82.76 -0.59 -0.34 16 20 N -0.22 -3.92 11.91 33.42 0.40 -3.52 16 21 N -0.37 -5.05 6.77 33.62 0.23 -4.82 16 22 H 0.45 4.40 7.94 -190.44 -1.51 2.89 16 23 C 0.05 0.69 6.75 -81.90 -0.55 0.14 16 24 C -0.09 -0.82 6.13 -91.77 -0.56 -1.39 16 25 C -0.18 -1.19 10.15 -26.73 -0.27 -1.46 16 26 C -0.16 -1.31 10.23 -26.73 -0.27 -1.58 16 27 C -0.10 -1.58 6.79 -39.31 -0.27 -1.85 16 28 Cl -0.01 -0.20 28.02 -51.86 -1.45 -1.65 16 29 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.02 0.52 5.45 -51.93 -0.28 0.24 16 31 H 0.06 1.29 7.17 -51.93 -0.37 0.92 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.07 1.01 7.85 -51.93 -0.41 0.60 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 1.39 8.12 -51.93 -0.42 0.97 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.42 8.80 5.67 -40.82 -0.23 8.57 16 39 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.09 0.56 7.16 -51.93 -0.37 0.19 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.11 0.69 8.14 -51.92 -0.42 0.27 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -33.47 362.69 -9.76 -43.23 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -6.93 Total: 6.51 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -3.43 Total: 2.99 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: 0.64 Total: -63.29 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.08 Total: -12.09 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.14 Total: 18.84 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.45 Total: -1.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.47 -9.76 -43.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027998312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.071 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.226 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds