Wall clock time and date at job start Tue Mar 31 2020 20:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48500 * 109.46885 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47015 * 299.99941 * 3 2 1 6 6 H 1.48503 * 109.47097 * 60.00198 * 3 2 1 7 7 C 1.38812 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99931 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00002 * 0.02562 * 7 2 1 10 10 C 1.47432 * 125.64779 * 359.97149 * 9 7 2 11 11 C 1.54901 * 104.83094 * 155.90940 * 10 9 7 12 12 C 1.55156 * 101.58691 * 37.00621 * 11 10 9 13 13 H 1.09000 * 110.71721 * 83.03833 * 12 11 10 14 14 C 1.52997 * 110.72546 * 206.13627 * 12 11 10 15 15 N 1.46505 * 109.47212 * 182.55775 * 14 12 11 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 12 17 17 O 1.21606 * 120.00433 * 0.02562 * 16 15 14 18 18 C 1.47392 * 119.99696 * 179.97438 * 16 15 14 19 19 C 1.41386 * 126.42682 * 270.03022 * 18 16 15 20 20 Cl 1.73604 * 126.00120 * 359.97438 * 19 18 16 21 21 N 1.30524 * 107.99125 * 179.97438 * 19 18 16 22 22 N 1.39928 * 108.89591 * 0.02562 * 21 19 18 23 23 H 0.97003 * 125.74288 * 179.97438 * 22 21 19 24 24 C 1.34242 * 108.52345 * 359.72621 * 22 21 19 25 25 C 1.50701 * 126.28335 * 180.29957 * 24 22 21 26 26 C 1.52998 * 117.49672 * 8.90330 * 25 24 22 27 27 C 1.52998 * 117.49698 * 300.24293 * 25 24 22 28 28 C 1.47318 * 125.61431 * 180.19651 * 9 7 2 29 29 H 0.96999 * 120.00396 * 359.97438 * 1 2 3 30 30 H 1.09001 * 110.36908 * 37.06646 * 10 9 7 31 31 H 1.08998 * 110.45389 * 274.79335 * 10 9 7 32 32 H 1.09007 * 111.00614 * 278.93244 * 11 10 9 33 33 H 1.09004 * 111.04006 * 155.09631 * 11 10 9 34 34 H 1.09002 * 109.47153 * 62.55768 * 14 12 11 35 35 H 1.09001 * 109.46832 * 302.55958 * 14 12 11 36 36 H 0.96996 * 119.99606 * 0.02562 * 15 14 12 37 37 H 1.09000 * 115.54768 * 154.57179 * 25 24 22 38 38 H 1.09002 * 117.50063 * 359.97438 * 26 25 24 39 39 H 1.09003 * 117.49732 * 145.02239 * 26 25 24 40 40 H 1.09005 * 117.49849 * 214.97619 * 27 25 24 41 41 H 1.08996 * 117.50161 * 359.97438 * 27 25 24 42 42 H 1.08997 * 110.06555 * 61.67733 * 28 9 7 43 43 H 1.09000 * 109.84738 * 300.41661 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8913 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.1415 -2.5332 0.0006 11 6 -0.4016 -3.9325 -0.6106 12 6 0.7785 -4.7525 -0.0253 13 1 0.5447 -5.1003 0.9809 14 6 1.1232 -5.9317 -0.9371 15 7 2.1978 -6.7208 -0.3296 16 6 2.6679 -7.8160 -0.9589 17 8 2.2006 -8.1489 -2.0311 18 6 3.7494 -8.6095 -0.3480 19 6 5.1379 -8.4213 -0.5361 20 17 5.8774 -7.2080 -1.5335 21 7 5.7662 -9.3200 0.1720 22 7 4.8241 -10.1137 0.8358 23 1 5.0246 -10.8554 1.4279 24 6 3.5963 -9.6726 0.5196 25 6 2.2905 -10.2361 1.0181 26 6 2.3522 -11.2827 2.1324 27 6 1.9892 -11.7033 0.7060 28 6 1.9339 -3.7298 0.0052 29 1 -0.4851 0.8400 0.0004 30 1 -0.5994 -1.7591 -0.6153 31 1 -0.5289 -2.4858 1.0183 32 1 -0.3520 -3.8989 -1.6991 33 1 -1.3590 -4.3333 -0.2775 34 1 1.4510 -5.5574 -1.9069 35 1 0.2416 -6.5590 -1.0688 36 1 2.5703 -6.4555 0.5258 37 1 1.4512 -9.5407 1.0267 38 1 3.3374 -11.5641 2.5046 39 1 1.5533 -11.2762 2.8738 40 1 0.9515 -11.9733 0.5097 41 1 2.7352 -12.2609 0.1398 42 1 2.5277 -3.8681 0.9087 43 1 2.5624 -3.8542 -0.8766 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028589527.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:33 Heat of formation + Delta-G solvation = 59.030132 kcal Electronic energy + Delta-G solvation = -26555.531063 eV Core-core repulsion = 22663.775748 eV Total energy + Delta-G solvation = -3891.755315 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.79699 -40.48405 -39.13232 -38.29803 -37.78290 -36.00469 -34.30184 -32.69912 -32.00548 -31.30305 -29.73226 -27.34744 -25.75647 -24.79664 -23.49721 -23.22202 -22.48434 -22.01564 -21.28499 -20.61180 -19.12689 -18.76701 -17.63985 -17.35982 -16.92235 -16.75385 -16.47593 -16.34062 -16.12634 -15.60844 -15.55262 -15.03359 -14.65398 -14.25428 -14.13430 -13.53633 -13.51232 -13.39994 -13.32537 -13.09924 -12.78270 -12.74494 -12.68562 -12.48616 -12.15029 -11.97213 -11.91080 -11.87661 -11.80781 -11.56191 -11.47127 -11.36297 -11.05475 -10.73075 -10.55112 -10.09449 -9.87897 -8.85618 -7.76125 -5.19629 0.29688 0.32390 0.91617 1.45439 1.46797 1.47497 1.57765 1.71992 2.30284 2.50363 2.80170 3.23238 3.33381 3.61022 3.64102 3.67225 3.82114 3.90775 3.99483 4.01995 4.03155 4.11636 4.41200 4.49982 4.62830 4.70176 4.71340 4.75090 4.86269 4.94256 4.95130 5.02131 5.09419 5.15830 5.17719 5.36506 5.44513 5.50602 5.70218 5.85680 5.87927 6.13062 6.34405 6.50332 7.13608 7.17201 7.81174 8.44370 9.25768 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.014691 B = 0.002741 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.423355 B =10213.368281 C =11294.165426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.067 4.067 3 Si 0.977 3.023 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.237 4.237 8 H 0.077 0.923 9 N -0.628 5.628 10 C 0.152 3.848 11 C -0.121 4.121 12 C -0.092 4.092 13 H 0.099 0.901 14 C 0.143 3.857 15 N -0.704 5.704 16 C 0.603 3.397 17 O -0.569 6.569 18 C -0.292 4.292 19 C 0.148 3.852 20 Cl 0.015 6.985 21 N -0.289 5.289 22 N -0.427 5.427 23 H 0.463 0.537 24 C 0.200 3.800 25 C -0.133 4.133 26 C -0.146 4.146 27 C -0.155 4.155 28 C 0.136 3.864 29 H 0.247 0.753 30 H 0.070 0.930 31 H -0.009 1.009 32 H 0.062 0.938 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.084 0.916 36 H 0.411 0.589 37 H 0.135 0.865 38 H 0.111 0.889 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.026 0.974 43 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.807 -27.221 5.668 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.806 3.194 4 H -0.193 1.193 5 H -0.219 1.219 6 H -0.218 1.218 7 C -0.366 4.366 8 H 0.095 0.905 9 N -0.355 5.355 10 C 0.027 3.973 11 C -0.160 4.160 12 C -0.111 4.111 13 H 0.117 0.883 14 C 0.020 3.980 15 N -0.355 5.355 16 C 0.387 3.613 17 O -0.448 6.448 18 C -0.307 4.307 19 C -0.044 4.044 20 Cl 0.043 6.957 21 N -0.114 5.114 22 N -0.139 5.139 23 H 0.313 0.687 24 C 0.066 3.934 25 C -0.153 4.153 26 C -0.183 4.183 27 C -0.193 4.193 28 C 0.011 3.989 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.009 0.991 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.071 0.929 35 H 0.103 0.897 36 H 0.247 0.753 37 H 0.153 0.847 38 H 0.129 0.871 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.044 0.956 43 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.696 -27.557 5.134 28.604 hybrid contribution 0.207 1.706 0.124 1.723 sum 5.903 -25.852 5.258 27.033 Atomic orbital electron populations 1.70057 1.06074 1.24865 1.58779 1.25593 0.96655 1.00828 1.02907 0.85024 0.78048 0.79581 0.76777 1.19347 1.21858 1.21793 1.19466 0.90913 0.83980 1.42229 0.90516 1.44908 1.02890 1.00910 1.86765 1.21726 0.83900 0.95006 0.96654 1.22842 0.97816 0.95328 1.00012 1.22283 0.95556 0.93213 1.00095 0.88270 1.21293 0.89985 0.91174 0.95597 1.45963 1.38245 1.26406 1.24847 1.17222 0.80635 0.79911 0.83486 1.90771 1.60404 1.70838 1.22771 1.19646 0.92071 1.06472 1.12526 1.22641 0.90461 0.94443 0.96881 1.98437 1.82682 1.49473 1.65093 1.77129 1.14063 1.06886 1.13338 1.45762 1.01891 1.28087 1.38119 0.68667 1.20633 0.88268 0.91898 0.92586 1.20841 0.92150 0.94685 1.07635 1.23265 1.05230 0.98043 0.91737 1.23238 1.04679 0.92264 0.99105 1.21565 0.94879 0.84778 0.97652 0.94366 0.91212 0.99112 0.91952 0.88912 0.92881 0.89741 0.75298 0.84733 0.87063 0.85500 0.86276 0.88184 0.95589 0.96275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.70 10.09 21.65 0.22 -56.48 16 2 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 3 Si 0.98 46.25 29.55 68.60 2.03 48.27 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.24 -13.45 10.28 84.03 0.86 -12.58 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.63 -32.38 3.40 -691.22 -2.35 -34.73 16 10 C 0.15 7.37 5.89 86.85 0.51 7.88 16 11 C -0.12 -4.23 6.54 31.98 0.21 -4.02 16 12 C -0.09 -2.82 2.98 -9.60 -0.03 -2.84 16 13 H 0.10 2.63 8.14 -2.39 -0.02 2.61 16 14 C 0.14 3.88 5.00 86.38 0.43 4.31 16 15 N -0.70 -17.42 5.43 -466.41 -2.53 -19.95 16 16 C 0.60 16.75 7.31 86.65 0.63 17.38 16 17 O -0.57 -20.03 17.11 -4.05 -0.07 -20.10 16 18 C -0.29 -6.98 5.88 -20.13 -0.12 -7.10 16 19 C 0.15 3.73 7.89 85.66 0.68 4.41 16 20 Cl 0.02 0.40 29.19 -2.72 -0.08 0.32 16 21 N -0.29 -6.39 12.64 -48.95 -0.62 -7.01 16 22 N -0.43 -6.13 7.17 -46.79 -0.34 -6.47 16 23 H 0.46 2.87 7.95 -213.43 -1.70 1.17 16 24 C 0.20 3.33 6.80 42.15 0.29 3.61 16 25 C -0.13 -1.45 6.02 -11.54 -0.07 -1.52 16 26 C -0.15 -0.59 10.14 30.62 0.31 -0.28 16 27 C -0.16 -1.12 10.24 30.62 0.31 -0.81 16 28 C 0.14 5.44 6.67 86.67 0.58 6.02 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.07 3.91 5.88 -2.39 -0.01 3.90 16 31 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 32 H 0.06 2.21 8.05 -2.38 -0.02 2.19 16 33 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 34 H 0.05 1.68 8.00 -2.39 -0.02 1.66 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.41 8.84 8.39 -92.71 -0.78 8.06 16 37 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.11 0.07 7.16 -2.39 -0.02 0.06 16 39 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 41 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.02 0.79 7.73 -2.39 -0.02 0.78 16 Total: -1.00 -75.86 375.58 -0.09 -75.94 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -1.41 Total: 9.13 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.06 Total: 11.06 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.62 Total: -124.64 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.07 Total: -20.10 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.27 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -75.86 -0.09 -75.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028589527.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.975 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds