Wall clock time and date at job start Tue Mar 31 2020 21:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38067 * 126.28256 * 2 1 4 4 C 1.47388 * 126.42007 * 359.96682 * 3 2 1 5 5 O 1.21611 * 120.00122 * 263.98308 * 4 3 2 6 6 N 1.34776 * 119.99792 * 83.98496 * 4 3 2 7 7 C 1.47156 * 120.71208 * 5.10120 * 6 4 3 8 8 C 1.53892 * 108.03458 * 132.73704 * 7 6 4 9 9 H 1.09000 * 112.09534 * 181.91004 * 8 7 6 10 10 C 1.54549 * 108.36737 * 306.25402 * 8 7 6 11 11 C 1.54830 * 104.74232 * 89.16742 * 10 8 7 12 12 C 1.54540 * 104.74614 * 0.02562 * 11 10 8 13 13 H 1.09007 * 112.68041 * 146.80303 * 12 11 10 14 14 C 1.47166 * 120.70501 * 185.07915 * 6 4 3 15 15 N 1.48306 * 107.20354 * 58.35815 * 8 7 6 16 16 C 1.36941 * 128.07724 * 106.10337 * 15 8 7 17 17 H 1.07993 * 120.00161 * 165.23269 * 16 15 8 18 18 C 1.38813 * 119.99434 * 345.22957 * 16 15 8 19 19 N 1.31615 * 120.00303 * 351.51142 * 18 16 15 20 20 Si 1.86802 * 119.99724 * 171.51319 * 18 16 15 21 21 H 1.48500 * 109.47008 * 270.00351 * 20 18 16 22 22 H 1.48504 * 109.46926 * 29.99723 * 20 18 16 23 23 H 1.48497 * 109.47235 * 149.99750 * 20 18 16 24 24 C 1.41392 * 107.15583 * 179.70797 * 3 2 1 25 25 Cl 1.73598 * 126.00335 * 180.26295 * 24 3 2 26 26 N 1.30529 * 107.98802 * 0.26006 * 24 3 2 27 27 N 1.34239 * 126.28280 * 180.15941 * 2 1 3 28 28 C 1.46503 * 125.73231 * 359.97438 * 27 2 1 29 29 H 1.08996 * 109.46824 * 95.06134 * 1 2 3 30 30 H 1.08994 * 109.47221 * 215.05981 * 1 2 3 31 31 H 1.09000 * 109.46938 * 335.06596 * 1 2 3 32 32 H 1.09002 * 109.74770 * 13.10443 * 7 6 4 33 33 H 1.08997 * 109.79293 * 252.39674 * 7 6 4 34 34 H 1.08996 * 110.36387 * 208.13957 * 10 8 7 35 35 H 1.09002 * 110.36411 * 330.45430 * 10 8 7 36 36 H 1.09004 * 110.30647 * 241.24551 * 11 10 8 37 37 H 1.09002 * 110.60621 * 118.91215 * 11 10 8 38 38 H 1.08993 * 109.75606 * 346.90203 * 14 6 4 39 39 H 1.09011 * 109.74730 * 107.63365 * 14 6 4 40 40 H 0.97004 * 119.99468 * 179.97438 * 19 18 16 41 41 H 1.08998 * 109.46920 * 270.33125 * 28 27 2 42 42 H 1.08993 * 109.47390 * 30.34275 * 28 27 2 43 43 H 1.09002 * 109.46271 * 150.33970 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1130 0.0000 4 6 1.8859 2.5202 -0.0007 5 8 1.8109 3.1332 -1.0483 6 7 1.5682 3.1276 1.1597 7 6 1.7590 2.4382 2.4457 8 6 2.4686 3.4089 3.4061 9 1 2.6737 2.9515 4.3740 10 6 3.7546 3.9211 2.7185 11 6 3.3089 5.1823 1.9388 12 6 1.7968 5.3113 2.2307 13 1 1.4634 6.3484 2.2701 14 6 1.0235 4.4947 1.1678 15 7 1.6111 4.6130 3.5255 16 6 0.8264 4.9894 4.5828 17 1 0.4417 5.9970 4.6380 18 6 0.5254 4.0757 5.5836 19 7 0.8502 2.8087 5.4373 20 14 -0.3408 4.6445 7.1378 21 1 0.6700 5.0441 8.1498 22 1 -1.2113 5.8056 6.8227 23 1 -1.1695 3.5363 7.6765 24 6 3.6599 0.6497 0.0069 25 17 5.0842 1.6422 0.0162 26 7 3.6340 -0.6553 0.0051 27 7 2.3014 -1.0821 -0.0030 28 6 1.8491 -2.4755 -0.0064 29 1 -0.3633 -0.0907 -1.0236 30 1 -0.3633 -0.8411 0.5903 31 1 -0.3633 0.9319 0.4332 32 1 2.3734 1.5497 2.2997 33 1 0.7915 2.1530 2.8588 34 1 4.5065 4.1787 3.4643 35 1 4.1426 3.1690 2.0315 36 1 3.4792 5.0465 0.8707 37 1 3.8408 6.0633 2.2981 38 1 1.1570 4.9503 0.1867 39 1 -0.0365 4.4674 1.4207 40 1 0.6401 2.1704 6.1369 41 1 1.7316 -2.8218 1.0205 42 1 0.8932 -2.5460 -0.5253 43 1 2.5862 -3.0955 -0.5168 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029568041.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:53 Heat of formation + Delta-G solvation = 79.443345 kcal Electronic energy + Delta-G solvation = -28944.143464 eV Core-core repulsion = 25053.273332 eV Total energy + Delta-G solvation = -3890.870131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.53162 -39.63699 -37.52863 -36.73741 -33.66206 -33.48778 -32.53753 -31.99653 -30.48623 -29.18875 -27.86432 -26.87652 -25.91286 -23.93842 -23.63079 -21.98455 -20.64372 -19.63063 -19.43079 -18.52812 -17.44185 -16.39685 -16.14234 -15.68042 -15.31645 -15.16892 -14.88445 -14.56087 -13.90377 -13.66972 -13.42714 -13.24102 -13.16196 -13.01575 -12.88257 -12.75003 -12.62286 -12.38728 -11.80022 -11.68191 -11.55414 -11.53747 -11.43702 -11.02986 -10.87961 -10.76553 -10.63419 -10.29205 -10.03146 -9.75909 -9.58807 -9.51560 -9.46077 -9.23076 -8.78316 -8.48511 -8.00970 -6.82257 -5.84432 -3.18917 1.43223 1.55929 2.30111 2.66581 3.03209 3.34940 3.41388 3.41821 3.76376 4.37563 4.42205 4.47155 4.90336 4.93679 5.10090 5.15147 5.26169 5.32954 5.34284 5.36633 5.69561 5.74226 5.75430 5.78797 5.86268 5.97735 6.00649 6.12333 6.20550 6.38123 6.45751 6.62629 6.68645 6.69746 6.72956 6.81377 6.96935 7.02893 7.31741 7.34257 7.50528 7.67754 8.10953 8.16351 8.74183 9.06216 9.68187 10.45763 11.28394 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.004616 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.273850 B = 6064.048239 C = 6801.078339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.133 3.867 3 C -0.252 4.252 4 C 0.589 3.411 5 O -0.554 6.554 6 N -0.580 5.580 7 C 0.113 3.887 8 C 0.168 3.832 9 H 0.119 0.881 10 C -0.138 4.138 11 C -0.122 4.122 12 C 0.135 3.865 13 H 0.078 0.922 14 C 0.101 3.899 15 N -0.585 5.585 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.004 4.004 19 N -0.916 5.916 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.281 1.281 23 H -0.292 1.292 24 C 0.158 3.842 25 Cl 0.018 6.982 26 N -0.284 5.284 27 N -0.352 5.352 28 C 0.099 3.901 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.253 0.747 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -8.738 -9.779 13.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.002 3.998 3 C -0.267 4.267 4 C 0.374 3.626 5 O -0.433 6.433 6 N -0.311 5.311 7 C -0.011 4.011 8 C 0.060 3.940 9 H 0.136 0.864 10 C -0.178 4.178 11 C -0.161 4.161 12 C 0.026 3.974 13 H 0.096 0.904 14 C -0.023 4.023 15 N -0.306 5.306 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.201 4.201 19 N -0.563 5.563 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.207 1.207 23 H -0.218 1.218 24 C -0.034 4.034 25 Cl 0.046 6.954 26 N -0.109 5.109 27 N -0.134 5.134 28 C -0.042 4.042 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.015 -9.589 -10.044 14.032 hybrid contribution -0.697 0.774 0.924 1.392 sum 1.318 -8.815 -9.120 12.753 Atomic orbital electron populations 1.20568 0.85996 1.05196 1.03669 1.21329 0.94803 0.85529 0.98095 1.19799 0.91014 0.94736 1.21149 1.17158 0.77418 0.84325 0.83681 1.90715 1.55053 1.65844 1.31706 1.48163 1.61044 1.15658 1.06240 1.22495 1.01949 0.94725 0.81937 1.21859 0.86802 0.87946 0.97349 0.86393 1.22765 0.99203 0.97174 0.98615 1.22530 0.96871 0.97827 0.98914 1.22137 0.93113 0.95443 0.86699 0.90426 1.22560 0.97702 0.81952 1.00132 1.45189 1.50199 1.23643 1.11572 1.19029 1.23213 0.95279 0.97369 0.90568 1.24794 1.00625 0.95097 0.99559 1.69823 1.51963 1.00938 1.33559 0.86134 0.78966 0.77397 0.83317 1.21658 1.20699 1.21822 1.22459 0.88690 0.90349 1.01883 1.98405 1.35449 1.64877 1.96688 1.77102 0.96744 1.10628 1.26414 1.47965 1.02769 1.06405 1.56288 1.21991 1.01170 0.76903 1.04108 0.89507 0.90074 0.88829 0.92663 0.90197 0.92907 0.92574 0.92570 0.92771 0.90627 0.91825 0.93655 0.89946 0.88966 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.66 36.01 0.35 -0.68 16 2 C 0.13 1.87 7.01 -81.60 -0.57 1.30 16 3 C -0.25 -4.34 3.94 -105.04 -0.41 -4.76 16 4 C 0.59 11.31 6.96 -12.54 -0.09 11.22 16 5 O -0.55 -11.96 16.57 5.27 0.09 -11.87 16 6 N -0.58 -11.22 2.28 -172.27 -0.39 -11.61 16 7 C 0.11 2.31 5.69 -3.22 -0.02 2.29 16 8 C 0.17 3.72 3.10 -65.66 -0.20 3.52 16 9 H 0.12 2.98 6.31 -51.93 -0.33 2.65 16 10 C -0.14 -2.71 6.23 -24.95 -0.16 -2.87 16 11 C -0.12 -2.29 6.24 -24.96 -0.16 -2.44 16 12 C 0.13 2.69 4.32 -65.22 -0.28 2.41 16 13 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 14 C 0.10 1.95 5.98 -2.76 -0.02 1.94 16 15 N -0.59 -13.70 2.79 -152.11 -0.42 -14.12 16 16 C -0.22 -5.67 10.37 -15.06 -0.16 -5.83 16 17 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 18 C 0.00 -0.11 5.43 -17.43 -0.09 -0.20 16 19 N -0.92 -24.28 10.35 55.49 0.57 -23.71 16 20 Si 0.91 20.87 29.56 -169.99 -5.03 15.84 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 C 0.16 2.68 7.81 -16.91 -0.13 2.55 16 25 Cl 0.02 0.29 28.09 -51.86 -1.46 -1.17 16 26 N -0.28 -4.49 12.50 33.18 0.41 -4.07 16 27 N -0.35 -4.56 3.98 -63.34 -0.25 -4.81 16 28 C 0.10 0.73 11.11 59.85 0.67 1.39 16 29 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.08 0.66 7.96 -51.93 -0.41 0.24 16 31 H 0.09 1.18 7.84 -51.93 -0.41 0.77 16 32 H 0.05 1.10 6.47 -51.93 -0.34 0.76 16 33 H 0.08 1.84 7.81 -51.93 -0.41 1.43 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.05 6.71 -51.93 -0.35 0.70 16 36 H 0.06 1.04 7.87 -51.93 -0.41 0.63 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.42 7.08 -51.93 -0.37 1.05 16 39 H 0.06 1.27 8.14 -51.92 -0.42 0.84 16 40 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.09 0.43 7.75 -51.93 -0.40 0.03 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 360.25 15.07 5.43 5.43 Total: -1.00 -30.97 360.25 -8.24 -39.21 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -5.92 Total: 1.04 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -1.27 Total: 9.85 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -0.08 Total: -58.33 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.09 Total: -11.87 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.03 Total: 15.84 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.46 Total: -1.17 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.97 -8.24 -39.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029568041.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.654 kcal (2) G-P(sol) polarization free energy of solvation -30.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds