Wall clock time and date at job start Tue Mar 31 2020 21:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34234 * 126.27702 * 2 1 4 4 H 0.96999 * 125.74265 * 359.97438 * 3 2 1 5 5 N 1.39930 * 108.52234 * 180.30048 * 3 2 1 6 6 C 1.30527 * 108.89382 * 359.73017 * 5 3 2 7 7 Cl 1.73602 * 126.00698 * 180.02562 * 6 5 3 8 8 C 1.38065 * 126.28359 * 179.84771 * 2 1 3 9 9 C 1.47387 * 126.42252 * 359.96340 * 8 2 1 10 10 O 1.21614 * 119.99605 * 269.71283 * 9 8 2 11 11 N 1.34772 * 120.00136 * 89.71657 * 9 8 2 12 12 C 1.46597 * 119.68111 * 359.72552 * 11 9 8 13 13 C 1.53955 * 110.58227 * 132.46500 * 12 11 9 14 14 C 1.51520 * 107.34791 * 51.04482 * 13 12 11 15 15 H 1.09005 * 108.81639 * 53.44746 * 14 13 12 16 16 C 1.55363 * 107.78113 * 295.14660 * 14 13 12 17 17 H 1.09005 * 112.27252 * 309.15560 * 16 14 13 18 18 C 1.53743 * 100.22098 * 190.93974 * 16 14 13 19 19 C 1.55284 * 101.84567 * 39.08856 * 18 16 14 20 20 N 1.45462 * 117.34036 * 178.10704 * 14 13 12 21 21 C 1.36939 * 126.40879 * 329.35225 * 20 14 13 22 22 H 1.08003 * 119.99593 * 7.55853 * 21 20 14 23 23 C 1.38812 * 120.00263 * 187.56010 * 21 20 14 24 24 N 1.31621 * 119.99880 * 8.10140 * 23 21 20 25 25 Si 1.86799 * 119.99773 * 188.10153 * 23 21 20 26 26 H 1.48503 * 109.47015 * 94.80178 * 25 23 21 27 27 H 1.48506 * 109.47014 * 214.79712 * 25 23 21 28 28 H 1.48498 * 109.47405 * 334.79747 * 25 23 21 29 29 C 1.47715 * 119.68672 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.46914 * 270.15318 * 1 2 3 31 31 H 1.09000 * 109.47258 * 30.15191 * 1 2 3 32 32 H 1.09006 * 109.47023 * 150.15505 * 1 2 3 33 33 H 1.09002 * 109.25342 * 252.74318 * 12 11 9 34 34 H 1.08994 * 109.25997 * 12.17687 * 12 11 9 35 35 H 1.08991 * 109.87965 * 291.58408 * 13 12 11 36 36 H 1.09002 * 109.88196 * 170.50727 * 13 12 11 37 37 H 1.08998 * 110.95344 * 157.22794 * 18 16 14 38 38 H 1.08996 * 110.95354 * 280.94982 * 18 16 14 39 39 H 1.09003 * 109.92023 * 96.86720 * 19 18 16 40 40 H 1.08995 * 109.92178 * 218.17138 * 19 18 16 41 41 H 0.97004 * 119.99746 * 179.97438 * 24 23 21 42 42 H 1.09001 * 110.07083 * 350.98710 * 29 11 9 43 43 H 1.08999 * 110.07201 * 112.56260 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0048 -0.0004 5 7 3.6339 0.6555 -0.0070 6 6 3.6599 -0.6496 -0.0053 7 17 5.0842 -1.6420 -0.0114 8 6 2.3241 -1.1129 0.0030 9 6 1.8859 -2.5202 0.0075 10 8 1.7108 -3.0990 1.0625 11 7 1.6795 -3.1654 -1.1576 12 6 1.8870 -2.4590 -2.4253 13 6 2.7300 -3.3136 -3.3893 14 6 2.0877 -4.6842 -3.4575 15 1 1.0346 -4.5667 -3.7132 16 6 2.2024 -5.3325 -2.0502 17 1 3.2200 -5.2977 -1.6611 18 6 1.7788 -6.7735 -2.3783 19 6 2.4573 -6.9992 -3.7568 20 7 2.6921 -5.6616 -4.3493 21 6 3.3543 -5.3954 -5.5180 22 1 3.5733 -4.3745 -5.7940 23 6 3.7441 -6.4377 -6.3478 24 7 3.3413 -7.6652 -6.0961 25 14 4.8404 -6.0981 -7.8217 26 1 6.2586 -6.3303 -7.4476 27 1 4.4673 -7.0063 -8.9358 28 1 4.6667 -4.6879 -8.2533 29 6 1.2410 -4.5759 -1.1450 30 1 -0.3633 0.0027 1.0277 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5115 33 1 0.9200 -2.2497 -2.8826 34 1 2.4039 -1.5190 -2.2326 35 1 3.7493 -3.4002 -3.0132 36 1 2.7368 -2.8577 -4.3794 37 1 2.1640 -7.4718 -1.6353 38 1 0.6948 -6.8521 -2.4599 39 1 3.4065 -7.5180 -3.6230 40 1 1.8006 -7.5816 -4.4030 41 1 3.6134 -8.3935 -6.6762 42 1 1.2902 -4.9739 -0.1314 43 1 0.2243 -4.6551 -1.5301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036734015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:13 Heat of formation + Delta-G solvation = 65.186862 kcal Electronic energy + Delta-G solvation = -27999.918481 eV Core-core repulsion = 24108.430142 eV Total energy + Delta-G solvation = -3891.488339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86598 -39.89525 -38.07631 -36.97057 -35.30793 -33.04474 -32.74738 -31.58231 -31.53786 -29.55674 -28.27924 -27.59035 -24.96420 -23.87832 -22.35713 -22.22119 -21.88978 -20.07872 -19.66192 -18.94158 -17.84154 -16.88032 -16.27620 -15.88649 -15.47728 -15.35911 -15.07258 -14.90651 -14.38281 -13.89559 -13.83830 -13.63448 -13.49899 -13.07382 -12.95967 -12.74648 -12.48013 -12.39388 -12.14691 -11.91591 -11.72505 -11.47568 -11.32158 -10.95900 -10.84882 -10.77624 -10.68289 -10.18982 -10.09392 -9.93884 -9.77921 -9.70771 -9.61305 -9.44988 -8.95753 -8.61934 -8.48436 -6.80403 -5.71219 -3.04695 1.21829 1.26171 1.92549 2.52815 2.61681 3.18865 3.40403 3.45794 3.47607 4.14523 4.45753 4.49696 4.56003 4.86084 5.00962 5.05755 5.11913 5.28619 5.35249 5.36711 5.38091 5.53028 5.56458 5.63109 5.66700 5.83109 5.91610 6.04770 6.17280 6.21466 6.25904 6.38330 6.51333 6.62670 6.63975 6.66566 6.85505 6.96905 7.09432 7.47796 7.51283 7.66830 7.80535 8.22991 8.25533 9.19560 9.84203 10.52837 11.41279 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003550 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.907745 B = 7886.190865 C = 8538.352538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.139 3.861 3 N -0.449 5.449 4 H 0.448 0.552 5 N -0.276 5.276 6 C 0.160 3.840 7 Cl 0.026 6.974 8 C -0.261 4.261 9 C 0.594 3.406 10 O -0.536 6.536 11 N -0.595 5.595 12 C 0.116 3.884 13 C -0.129 4.129 14 C 0.169 3.831 15 H 0.020 0.980 16 C -0.124 4.124 17 H 0.080 0.920 18 C -0.134 4.134 19 C 0.175 3.825 20 N -0.593 5.593 21 C -0.226 4.226 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.127 3.873 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.252 0.748 42 H 0.091 0.909 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.749 16.260 12.509 21.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.007 3.993 3 N -0.158 5.158 4 H 0.294 0.706 5 N -0.101 5.101 6 C -0.033 4.033 7 Cl 0.054 6.946 8 C -0.276 4.276 9 C 0.380 3.620 10 O -0.413 6.413 11 N -0.327 5.327 12 C -0.007 4.007 13 C -0.168 4.168 14 C 0.061 3.939 15 H 0.037 0.963 16 C -0.144 4.144 17 H 0.098 0.902 18 C -0.173 4.173 19 C 0.051 3.949 20 N -0.317 5.317 21 C -0.355 4.355 22 H 0.095 0.905 23 C -0.203 4.203 24 N -0.565 5.565 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.206 1.206 29 C 0.005 3.995 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.109 0.891 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.911 16.745 12.832 21.909 hybrid contribution 0.359 -0.105 -0.951 1.022 sum -5.553 16.640 11.880 21.186 Atomic orbital electron populations 1.20619 0.85675 1.04898 1.04545 1.21388 0.94827 0.85960 0.97160 1.45821 1.03053 1.08584 1.58352 0.70625 1.77169 0.96428 1.10737 1.25811 1.22605 0.89054 0.90469 1.01191 1.98448 1.34947 1.64571 1.96632 1.19786 0.91195 0.94662 1.22003 1.17198 0.76828 0.84296 0.83717 1.90770 1.51847 1.67735 1.30911 1.48248 1.65957 1.12866 1.05607 1.21722 1.00059 0.95219 0.83748 1.21880 0.99516 0.96931 0.98515 1.20594 0.95064 0.89327 0.88940 0.96314 1.22621 0.99204 0.96043 0.96570 0.90156 1.22692 1.00106 0.94791 0.99745 1.21520 0.97981 0.87203 0.88226 1.44174 1.64833 1.00826 1.21898 1.18984 1.28508 0.92879 0.95078 0.90472 1.24781 1.01146 0.95632 0.98748 1.69951 1.47937 0.98999 1.39634 0.86174 0.80599 0.77214 0.82227 1.21712 1.21814 1.20643 1.21655 0.97445 0.78816 1.01581 0.88942 0.89914 0.88861 0.91764 0.90682 0.91324 0.90600 0.92089 0.92167 0.94664 0.92719 0.93801 0.89085 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.25 36.01 0.37 -0.19 16 2 C 0.14 1.28 7.29 -81.60 -0.60 0.68 16 3 N -0.45 -3.73 7.28 33.86 0.25 -3.48 16 4 H 0.45 1.89 8.96 -182.73 -1.64 0.26 16 5 N -0.28 -3.34 12.64 33.18 0.42 -2.92 16 6 C 0.16 2.15 7.69 -16.91 -0.13 2.02 16 7 Cl 0.03 0.36 29.19 -51.86 -1.51 -1.15 16 8 C -0.26 -3.36 3.83 -105.04 -0.40 -3.76 16 9 C 0.59 8.86 7.03 -12.54 -0.09 8.77 16 10 O -0.54 -9.59 16.47 5.27 0.09 -9.50 16 11 N -0.59 -8.49 3.00 -173.80 -0.52 -9.01 16 12 C 0.12 1.55 6.22 -3.49 -0.02 1.53 16 13 C -0.13 -2.18 5.45 -26.98 -0.15 -2.33 16 14 C 0.17 3.30 2.57 -67.98 -0.17 3.12 16 15 H 0.02 0.39 7.92 -51.93 -0.41 -0.02 16 16 C -0.12 -2.16 2.85 -89.39 -0.25 -2.42 16 17 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 18 C -0.13 -2.44 6.54 -25.13 -0.16 -2.61 16 19 C 0.18 4.15 5.46 -1.91 -0.01 4.14 16 20 N -0.59 -14.58 3.35 -163.09 -0.55 -15.13 16 21 C -0.23 -6.10 9.89 -15.06 -0.15 -6.25 16 22 H 0.08 2.00 7.18 -52.48 -0.38 1.63 16 23 C -0.01 -0.18 5.45 -17.43 -0.09 -0.27 16 24 N -0.92 -26.71 10.66 55.49 0.59 -26.12 16 25 Si 0.91 21.90 29.56 -169.99 -5.03 16.87 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 29 C 0.13 1.87 5.95 -3.79 -0.02 1.85 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.61 7.96 -51.93 -0.41 0.20 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.95 6.12 -51.93 -0.32 0.63 16 35 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 36 H 0.08 1.30 7.64 -51.93 -0.40 0.90 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 39 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 40 H 0.05 1.44 7.24 -51.93 -0.38 1.06 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 42 H 0.09 1.38 7.00 -51.93 -0.36 1.02 16 43 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -33.52 361.14 -9.92 -43.44 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -7.21 Total: -2.72 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -1.89 Total: 4.28 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.19 Total: -56.66 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 17 Polarization: 0.36 SS G_CDS: -1.51 Total: -1.15 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.52 -9.92 -43.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036734015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.623 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds