Wall clock time and date at job start Tue Mar 31 2020 21:17:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34234 * 126.27702 * 2 1 4 4 H 0.96999 * 125.74265 * 359.97438 * 3 2 1 5 5 N 1.39930 * 108.52234 * 180.30048 * 3 2 1 6 6 C 1.30527 * 108.89382 * 359.73017 * 5 3 2 7 7 Cl 1.73602 * 126.00698 * 180.02562 * 6 5 3 8 8 C 1.38065 * 126.28359 * 179.84771 * 2 1 3 9 9 C 1.47387 * 126.42252 * 359.96340 * 8 2 1 10 10 O 1.21614 * 119.99605 * 269.71283 * 9 8 2 11 11 N 1.34772 * 120.00136 * 89.71657 * 9 8 2 12 12 C 1.46597 * 119.68111 * 359.72552 * 11 9 8 13 13 C 1.53955 * 110.58227 * 132.46500 * 12 11 9 14 14 C 1.51520 * 107.34791 * 51.04482 * 13 12 11 15 15 H 1.09005 * 108.81639 * 53.44746 * 14 13 12 16 16 C 1.55363 * 107.78113 * 295.14660 * 14 13 12 17 17 H 1.09005 * 112.27252 * 309.15560 * 16 14 13 18 18 C 1.53743 * 100.22098 * 190.93974 * 16 14 13 19 19 C 1.55284 * 101.84567 * 39.08856 * 18 16 14 20 20 N 1.45462 * 117.34036 * 178.10704 * 14 13 12 21 21 C 1.36939 * 126.40879 * 329.35225 * 20 14 13 22 22 H 1.08003 * 119.99593 * 7.55853 * 21 20 14 23 23 C 1.38812 * 120.00263 * 187.56010 * 21 20 14 24 24 N 1.31621 * 119.99880 * 8.10140 * 23 21 20 25 25 Si 1.86799 * 119.99773 * 188.10153 * 23 21 20 26 26 H 1.48503 * 109.47015 * 94.80178 * 25 23 21 27 27 H 1.48506 * 109.47014 * 214.79712 * 25 23 21 28 28 H 1.48498 * 109.47405 * 334.79747 * 25 23 21 29 29 C 1.47715 * 119.68672 * 179.97438 * 11 9 8 30 30 H 1.08998 * 109.46914 * 270.15318 * 1 2 3 31 31 H 1.09000 * 109.47258 * 30.15191 * 1 2 3 32 32 H 1.09006 * 109.47023 * 150.15505 * 1 2 3 33 33 H 1.09002 * 109.25342 * 252.74318 * 12 11 9 34 34 H 1.08994 * 109.25997 * 12.17687 * 12 11 9 35 35 H 1.08991 * 109.87965 * 291.58408 * 13 12 11 36 36 H 1.09002 * 109.88196 * 170.50727 * 13 12 11 37 37 H 1.08998 * 110.95344 * 157.22794 * 18 16 14 38 38 H 1.08996 * 110.95354 * 280.94982 * 18 16 14 39 39 H 1.09003 * 109.92023 * 96.86720 * 19 18 16 40 40 H 1.08995 * 109.92178 * 218.17138 * 19 18 16 41 41 H 0.97004 * 119.99746 * 179.97438 * 24 23 21 42 42 H 1.09001 * 110.07083 * 350.98710 * 29 11 9 43 43 H 1.08999 * 110.07201 * 112.56260 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0018 2.0048 -0.0004 5 7 3.6339 0.6555 -0.0070 6 6 3.6599 -0.6496 -0.0053 7 17 5.0842 -1.6420 -0.0114 8 6 2.3241 -1.1129 0.0030 9 6 1.8859 -2.5202 0.0075 10 8 1.7108 -3.0990 1.0625 11 7 1.6795 -3.1654 -1.1576 12 6 1.8870 -2.4590 -2.4253 13 6 2.7300 -3.3136 -3.3893 14 6 2.0877 -4.6842 -3.4575 15 1 1.0346 -4.5667 -3.7132 16 6 2.2024 -5.3325 -2.0502 17 1 3.2200 -5.2977 -1.6611 18 6 1.7788 -6.7735 -2.3783 19 6 2.4573 -6.9992 -3.7568 20 7 2.6921 -5.6616 -4.3493 21 6 3.3543 -5.3954 -5.5180 22 1 3.5733 -4.3745 -5.7940 23 6 3.7441 -6.4377 -6.3478 24 7 3.3413 -7.6652 -6.0961 25 14 4.8404 -6.0981 -7.8217 26 1 6.2586 -6.3303 -7.4476 27 1 4.4673 -7.0063 -8.9358 28 1 4.6667 -4.6879 -8.2533 29 6 1.2410 -4.5759 -1.1450 30 1 -0.3633 0.0027 1.0277 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5115 33 1 0.9200 -2.2497 -2.8826 34 1 2.4039 -1.5190 -2.2326 35 1 3.7493 -3.4002 -3.0132 36 1 2.7368 -2.8577 -4.3794 37 1 2.1640 -7.4718 -1.6353 38 1 0.6948 -6.8521 -2.4599 39 1 3.4065 -7.5180 -3.6230 40 1 1.8006 -7.5816 -4.4030 41 1 3.6134 -8.3935 -6.6762 42 1 1.2902 -4.9739 -0.1314 43 1 0.2243 -4.6551 -1.5301 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036734015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:12 Heat of formation + Delta-G solvation = 42.836302 kcal Electronic energy + Delta-G solvation = -28000.887674 eV Core-core repulsion = 24108.430142 eV Total energy + Delta-G solvation = -3892.457532 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.72367 -41.16615 -39.49107 -37.95885 -36.74875 -34.55064 -33.73095 -33.01860 -32.58326 -31.14297 -29.69207 -28.42448 -26.68164 -25.31835 -23.75166 -23.07232 -22.97603 -21.83778 -21.06181 -20.01701 -18.92034 -18.28534 -17.69283 -17.05359 -16.80924 -16.37517 -16.23957 -16.10282 -15.94900 -15.61427 -15.08245 -14.80217 -14.38173 -14.26439 -14.05739 -13.98546 -13.75565 -13.40486 -13.29973 -13.11276 -13.00232 -12.96899 -12.81192 -12.69604 -12.46076 -12.08897 -11.98034 -11.89923 -11.78345 -11.61418 -11.45157 -11.04898 -10.95101 -10.67923 -10.55766 -9.83817 -9.68605 -8.82332 -7.81796 -5.16127 0.36333 0.45505 0.98331 1.44012 1.46346 1.48282 1.56331 1.82987 2.14201 2.52104 3.35644 3.37650 3.52022 3.65712 3.84807 3.86015 3.94719 4.04618 4.08834 4.22813 4.26301 4.43233 4.53027 4.64046 4.66251 4.67769 4.76794 4.79330 4.84108 4.87290 4.94291 5.07664 5.10639 5.12137 5.24406 5.48143 5.56684 5.59169 5.69186 5.79444 5.98468 6.23715 6.24716 6.35340 7.10171 7.11574 7.82622 8.51791 9.30043 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.015181 B = 0.003550 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.907745 B = 7886.190865 C = 8538.352538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.167 3.833 3 N -0.426 5.426 4 H 0.467 0.533 5 N -0.295 5.295 6 C 0.145 3.855 7 Cl 0.008 6.992 8 C -0.297 4.297 9 C 0.601 3.399 10 O -0.570 6.570 11 N -0.594 5.594 12 C 0.128 3.872 13 C -0.123 4.123 14 C 0.160 3.840 15 H 0.027 0.973 16 C -0.110 4.110 17 H 0.059 0.941 18 C -0.119 4.119 19 C 0.180 3.820 20 N -0.614 5.614 21 C -0.229 4.229 22 H 0.085 0.915 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.969 3.031 26 H -0.294 1.294 27 H -0.296 1.296 28 H -0.264 1.264 29 C 0.135 3.865 30 H 0.105 0.895 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.083 0.917 39 H -0.004 1.004 40 H 0.021 0.979 41 H 0.244 0.756 42 H 0.090 0.910 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.743 19.294 13.144 24.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.033 3.967 3 N -0.138 5.138 4 H 0.318 0.682 5 N -0.121 5.121 6 C -0.047 4.047 7 Cl 0.036 6.964 8 C -0.313 4.313 9 C 0.388 3.612 10 O -0.449 6.449 11 N -0.325 5.325 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.053 3.947 15 H 0.045 0.955 16 C -0.130 4.130 17 H 0.078 0.922 18 C -0.158 4.158 19 C 0.055 3.945 20 N -0.338 5.338 21 C -0.358 4.358 22 H 0.102 0.898 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.798 3.202 26 H -0.221 1.221 27 H -0.223 1.223 28 H -0.189 1.189 29 C 0.013 3.987 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.014 0.986 40 H 0.039 0.961 41 H 0.054 0.946 42 H 0.108 0.892 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.911 19.858 13.476 25.269 hybrid contribution 0.933 -0.965 -1.118 1.747 sum -6.978 18.893 12.359 23.630 Atomic orbital electron populations 1.20844 0.82652 1.06514 1.05800 1.21846 0.96200 0.84774 0.93870 1.45843 1.01748 1.09597 1.56576 0.68233 1.77103 0.98532 1.10115 1.26322 1.22631 0.88771 0.90892 1.02365 1.98434 1.36048 1.65180 1.96774 1.19720 0.91565 0.94479 1.25498 1.17394 0.75756 0.84971 0.83058 1.90748 1.53336 1.68786 1.32048 1.48261 1.65691 1.12607 1.05952 1.21681 1.00827 0.94507 0.82509 1.21792 0.99012 0.95976 0.99424 1.20831 0.95041 0.89935 0.88844 0.95532 1.22453 0.99020 0.95618 0.95952 0.92224 1.22562 1.00945 0.95756 0.96499 1.21308 0.95820 0.86669 0.90734 1.44467 1.64865 1.02398 1.22117 1.19376 1.27613 0.93138 0.95656 0.89754 1.25573 1.03031 0.95637 1.01759 1.70159 1.49498 0.99678 1.40666 0.85188 0.78353 0.77644 0.78987 1.22128 1.22334 1.18878 1.21560 0.97555 0.78808 1.00763 0.87712 0.86280 0.89227 0.88993 0.89467 0.93279 0.90858 0.90482 0.89863 0.98572 0.96056 0.94630 0.89181 0.88818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.25 71.24 0.73 0.07 16 2 C 0.17 2.47 7.29 42.15 0.31 2.78 16 3 N -0.43 -5.60 7.28 -46.79 -0.34 -5.94 16 4 H 0.47 2.02 8.96 -213.43 -1.91 0.10 16 5 N -0.29 -6.55 12.64 -48.95 -0.62 -7.17 16 6 C 0.15 3.73 7.69 85.66 0.66 4.39 16 7 Cl 0.01 0.22 29.19 -2.72 -0.08 0.14 16 8 C -0.30 -7.00 3.83 -20.13 -0.08 -7.07 16 9 C 0.60 16.83 7.03 86.65 0.61 17.44 16 10 O -0.57 -19.70 16.47 -4.08 -0.07 -19.77 16 11 N -0.59 -15.61 3.00 -822.05 -2.47 -18.08 16 12 C 0.13 3.06 6.22 86.68 0.54 3.60 16 13 C -0.12 -4.00 5.45 30.43 0.17 -3.84 16 14 C 0.16 6.12 2.57 45.51 0.12 6.24 16 15 H 0.03 1.02 7.92 -2.38 -0.02 1.00 16 16 C -0.11 -3.75 2.85 -10.00 -0.03 -3.78 16 17 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 18 C -0.12 -4.25 6.54 31.63 0.21 -4.05 16 19 C 0.18 8.83 5.46 86.84 0.47 9.30 16 20 N -0.61 -30.73 3.35 -669.91 -2.24 -32.97 16 21 C -0.23 -12.52 9.89 84.03 0.83 -11.69 16 22 H 0.08 4.38 7.18 -2.91 -0.02 4.35 16 23 C -0.07 -3.81 5.45 84.86 0.46 -3.34 16 24 N -0.95 -57.56 10.66 21.65 0.23 -57.33 16 25 Si 0.97 45.86 29.56 68.60 2.03 47.89 16 26 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 27 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 28 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 29 C 0.13 3.69 5.95 85.88 0.51 4.20 16 30 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.12 -0.03 8.14 -2.39 -0.02 -0.05 16 32 H 0.09 0.76 7.96 -2.38 -0.02 0.74 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.09 1.96 6.12 -2.39 -0.01 1.94 16 35 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 36 H 0.07 2.42 7.64 -2.39 -0.02 2.40 16 37 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 39 H 0.00 -0.23 7.86 -2.39 -0.02 -0.25 16 40 H 0.02 1.17 7.24 -2.39 -0.02 1.16 16 41 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.09 2.56 7.00 -2.39 -0.02 2.54 16 43 H 0.09 2.18 8.08 -2.39 -0.02 2.16 16 Total: -1.00 -76.49 361.14 1.09 -75.40 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -0.86 Total: 3.58 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.51 Total: 14.25 kcal Atomic # 7 Polarization: -116.05 SS G_CDS: -5.44 Total: -121.49 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.07 Total: -19.77 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -76.49 1.09 -75.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036734015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.241 kcal (2) G-P(sol) polarization free energy of solvation -76.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds