Wall clock time and date at job start Tue Mar 31 2020 21:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34237 * 126.28257 * 2 1 4 4 H 0.97001 * 125.73693 * 0.02859 * 3 2 1 5 5 N 1.39925 * 108.52516 * 180.29815 * 3 2 1 6 6 C 1.30531 * 108.89630 * 359.73067 * 5 3 2 7 7 Cl 1.73595 * 126.00854 * 180.02562 * 6 5 3 8 8 C 1.38066 * 126.28159 * 179.84665 * 2 1 3 9 9 C 1.47381 * 126.42457 * 359.96222 * 8 2 1 10 10 O 1.21610 * 120.00354 * 269.72051 * 9 8 2 11 11 N 1.34784 * 119.99870 * 89.71553 * 9 8 2 12 12 C 1.47139 * 121.01235 * 359.97438 * 11 9 8 13 13 C 1.53051 * 107.68330 * 122.55801 * 12 11 9 14 14 C 1.51141 * 111.10889 * 54.40471 * 13 12 11 15 15 H 1.09007 * 108.45737 * 185.38897 * 14 13 12 16 16 C 1.53990 * 113.17387 * 304.88039 * 14 13 12 17 17 H 1.08999 * 112.71472 * 284.03433 * 16 14 13 18 18 C 1.56019 * 100.39080 * 163.66318 * 16 14 13 19 19 C 1.54503 * 102.62035 * 323.14668 * 18 16 14 20 20 N 1.46467 * 113.23579 * 65.10518 * 14 13 12 21 21 C 1.36940 * 126.05449 * 29.51438 * 20 14 13 22 22 H 1.07999 * 119.99674 * 0.02562 * 21 20 14 23 23 C 1.38814 * 120.00093 * 180.02562 * 21 20 14 24 24 N 1.31624 * 119.99576 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00002 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46674 * 90.00490 * 25 23 21 27 27 H 1.48500 * 109.46996 * 209.99762 * 25 23 21 28 28 H 1.48493 * 109.47404 * 330.00249 * 25 23 21 29 29 C 1.46525 * 121.01389 * 179.72145 * 11 9 8 30 30 H 1.08998 * 109.46980 * 270.15209 * 1 2 3 31 31 H 1.08996 * 109.46680 * 30.15401 * 1 2 3 32 32 H 1.09004 * 109.46740 * 150.14869 * 1 2 3 33 33 H 1.09001 * 109.81988 * 242.10651 * 12 11 9 34 34 H 1.09000 * 109.81617 * 3.01791 * 12 11 9 35 35 H 1.09000 * 109.14890 * 174.81693 * 13 12 11 36 36 H 1.09002 * 109.15132 * 293.98022 * 13 12 11 37 37 H 1.09000 * 110.78302 * 204.86193 * 18 16 14 38 38 H 1.09001 * 110.77447 * 81.42490 * 18 16 14 39 39 H 1.08994 * 109.89850 * 263.44348 * 19 18 16 40 40 H 1.09000 * 110.04809 * 142.28974 * 19 18 16 41 41 H 0.96995 * 119.99771 * 180.02562 * 24 23 21 42 42 H 1.09008 * 109.34732 * 355.83293 * 29 11 9 43 43 H 1.08996 * 109.34820 * 115.37895 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0020 2.0047 0.0004 5 7 3.6340 0.6554 -0.0069 6 6 3.6600 -0.6497 -0.0052 7 17 5.0842 -1.6421 -0.0112 8 6 2.3241 -1.1130 0.0030 9 6 1.8859 -2.5201 0.0075 10 8 1.7106 -3.0991 1.0625 11 7 1.6795 -3.1654 -1.1577 12 6 1.8841 -2.4865 -2.4469 13 6 2.9165 -3.2929 -3.2383 14 6 2.4976 -4.7397 -3.3631 15 1 3.3034 -5.2918 -3.8469 16 6 2.2198 -5.4095 -2.0046 17 1 3.1326 -5.6593 -1.4639 18 6 1.4254 -6.6694 -2.4692 19 6 0.5882 -6.1248 -3.6480 20 7 1.2764 -4.9218 -4.1509 21 6 0.8496 -4.1174 -5.1736 22 1 1.4339 -3.2567 -5.4634 23 6 -0.3341 -4.4084 -5.8379 24 7 -1.0464 -5.4572 -5.4843 25 14 -0.9166 -3.3107 -7.2325 26 1 -0.3635 -3.8079 -8.5178 27 1 -2.4003 -3.3307 -7.2915 28 1 -0.4493 -1.9210 -6.9970 29 6 1.2496 -4.5661 -1.1791 30 1 -0.3633 0.0027 1.0276 31 1 -0.3632 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5115 33 1 0.9442 -2.4479 -2.9976 34 1 2.2557 -1.4759 -2.2774 35 1 3.0185 -2.8630 -4.2347 36 1 3.8781 -3.2417 -2.7276 37 1 0.7784 -7.0346 -1.6716 38 1 2.1048 -7.4521 -2.8065 39 1 -0.4121 -5.8631 -3.3030 40 1 0.5241 -6.8731 -4.4380 41 1 -1.8733 -5.6607 -5.9486 42 1 1.2176 -4.9497 -0.1593 43 1 0.2544 -4.6317 -1.6186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036734016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:17 Heat of formation + Delta-G solvation = 64.537286 kcal Electronic energy + Delta-G solvation = -28603.701234 eV Core-core repulsion = 24712.184728 eV Total energy + Delta-G solvation = -3891.516507 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.72970 -39.78641 -38.00241 -36.92781 -34.90553 -32.92627 -32.79511 -31.59132 -31.43523 -29.26531 -27.97528 -27.31598 -25.27153 -24.10036 -22.48695 -22.12187 -21.96688 -20.03046 -19.35411 -18.40129 -17.54704 -16.67262 -16.32182 -15.82016 -15.39905 -15.25476 -15.06053 -14.73733 -14.38307 -13.92679 -13.68874 -13.57380 -13.34685 -12.93060 -12.74836 -12.60750 -12.35050 -12.13289 -12.08491 -11.84390 -11.52301 -11.39905 -11.09348 -11.02947 -10.87874 -10.79633 -10.62464 -10.16490 -10.01984 -9.89636 -9.68815 -9.63006 -9.60944 -9.59111 -8.83029 -8.61614 -8.15443 -6.82389 -5.73463 -3.05733 1.32048 1.34243 2.04317 2.67785 2.76864 3.35955 3.41112 3.43477 3.45100 4.30239 4.46399 4.60570 4.74822 5.00652 5.18957 5.21305 5.29646 5.39288 5.49802 5.54023 5.57832 5.59666 5.66361 5.74230 5.82974 5.94135 6.08221 6.16059 6.32505 6.33598 6.37879 6.46433 6.59119 6.73649 6.75501 6.80655 6.93247 6.98245 7.07684 7.55795 7.61590 7.78727 7.81177 8.23585 8.44287 9.19413 9.81626 10.49754 11.38593 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.004338 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.279790 B = 6453.229745 C = 7209.208030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.141 3.859 3 N -0.449 5.449 4 H 0.447 0.553 5 N -0.279 5.279 6 C 0.160 3.840 7 Cl 0.021 6.979 8 C -0.257 4.257 9 C 0.594 3.406 10 O -0.543 6.543 11 N -0.587 5.587 12 C 0.119 3.881 13 C -0.127 4.127 14 C 0.171 3.829 15 H 0.017 0.983 16 C -0.116 4.116 17 H 0.077 0.923 18 C -0.142 4.142 19 C 0.176 3.824 20 N -0.593 5.593 21 C -0.222 4.222 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.127 3.873 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.042 0.958 41 H 0.251 0.749 42 H 0.080 0.920 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 10.111 10.573 15.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 N -0.159 5.159 4 H 0.293 0.707 5 N -0.104 5.104 6 C -0.032 4.032 7 Cl 0.048 6.952 8 C -0.273 4.273 9 C 0.379 3.621 10 O -0.421 6.421 11 N -0.318 5.318 12 C -0.003 4.003 13 C -0.166 4.166 14 C 0.064 3.936 15 H 0.034 0.966 16 C -0.137 4.137 17 H 0.096 0.904 18 C -0.181 4.181 19 C 0.052 3.948 20 N -0.319 5.319 21 C -0.350 4.350 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C 0.005 3.995 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.739 10.739 10.955 16.379 hybrid contribution -0.665 0.271 -0.986 1.220 sum 5.075 11.010 9.968 15.695 Atomic orbital electron populations 1.20639 0.85607 1.05182 1.04459 1.21423 0.94901 0.85926 0.96874 1.45801 1.02999 1.08580 1.58481 0.70667 1.77121 0.96576 1.10708 1.26019 1.22529 0.88807 0.90418 1.01480 1.98420 1.35193 1.64831 1.96710 1.19787 0.91070 0.94754 1.21640 1.17110 0.77092 0.84251 0.83601 1.90752 1.52535 1.67851 1.30949 1.48015 1.65339 1.12766 1.05664 1.21707 1.01079 0.94593 0.82970 1.21571 0.97418 0.97430 1.00224 1.20236 0.90713 0.92685 0.90010 0.96555 1.22666 0.97846 0.96446 0.96701 0.90436 1.23138 0.99079 0.96193 0.99693 1.21239 0.93627 0.88390 0.91553 1.44316 1.21940 1.28778 1.36872 1.18943 1.03692 1.05297 1.07097 0.90432 1.24752 0.97681 0.98172 0.99692 1.69954 1.16045 1.27722 1.42985 0.86220 0.77845 0.79809 0.82465 1.21734 1.21820 1.20818 1.21481 0.98329 0.79085 1.00603 0.88994 0.89908 0.88600 0.89254 0.91479 0.90780 0.92634 0.91977 0.92367 0.93506 0.94010 0.93833 0.90164 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.83 10.25 36.01 0.37 -0.46 16 2 C 0.14 1.56 7.29 -81.60 -0.60 0.97 16 3 N -0.45 -4.37 7.28 33.86 0.25 -4.12 16 4 H 0.45 2.53 8.96 -182.73 -1.64 0.89 16 5 N -0.28 -3.62 12.64 33.18 0.42 -3.20 16 6 C 0.16 2.28 7.86 -16.90 -0.13 2.15 16 7 Cl 0.02 0.28 29.19 -51.86 -1.51 -1.23 16 8 C -0.26 -3.70 3.87 -105.04 -0.41 -4.11 16 9 C 0.59 9.93 7.06 -12.54 -0.09 9.84 16 10 O -0.54 -10.61 16.53 5.27 0.09 -10.52 16 11 N -0.59 -9.76 2.94 -174.54 -0.51 -10.27 16 12 C 0.12 1.95 6.26 -3.67 -0.02 1.92 16 13 C -0.13 -2.18 5.19 -27.64 -0.14 -2.32 16 14 C 0.17 3.31 2.85 -68.37 -0.19 3.11 16 15 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 16 C -0.12 -2.01 3.84 -88.61 -0.34 -2.35 16 17 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 18 C -0.14 -2.55 6.28 -24.33 -0.15 -2.70 16 19 C 0.18 4.01 4.64 -2.75 -0.01 4.00 16 20 N -0.59 -13.69 3.12 -164.50 -0.51 -14.21 16 21 C -0.22 -5.60 9.02 -15.06 -0.14 -5.74 16 22 H 0.08 1.89 6.69 -52.49 -0.35 1.54 16 23 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 24 N -0.92 -25.63 10.38 55.49 0.58 -25.05 16 25 Si 0.91 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 29 C 0.13 2.21 5.44 -4.15 -0.02 2.19 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.95 7.96 -51.93 -0.41 0.54 16 33 H 0.09 1.66 7.48 -51.93 -0.39 1.27 16 34 H 0.07 1.00 6.35 -51.93 -0.33 0.67 16 35 H 0.07 1.31 7.01 -51.93 -0.36 0.94 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.01 7.97 -51.93 -0.41 0.60 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.17 6.99 -51.93 -0.36 0.81 16 40 H 0.04 1.07 7.56 -51.93 -0.39 0.68 16 41 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 42 H 0.08 1.39 6.99 -51.92 -0.36 1.03 16 43 H 0.08 1.54 6.79 -51.93 -0.35 1.19 16 LS Contribution 356.23 15.07 5.37 5.37 Total: -1.00 -31.26 356.23 -9.88 -41.14 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.04 Total: -0.11 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -1.97 Total: 6.23 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.21 Total: -56.85 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.51 Total: -1.23 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.26 -9.88 -41.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036734016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.677 kcal (2) G-P(sol) polarization free energy of solvation -31.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds