Wall clock time and date at job start Tue Mar 31 2020 21:17:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.34237 * 126.28257 * 2 1 4 4 H 0.97001 * 125.73693 * 0.02859 * 3 2 1 5 5 N 1.39925 * 108.52516 * 180.29815 * 3 2 1 6 6 C 1.30531 * 108.89630 * 359.73067 * 5 3 2 7 7 Cl 1.73595 * 126.00854 * 180.02562 * 6 5 3 8 8 C 1.38066 * 126.28159 * 179.84665 * 2 1 3 9 9 C 1.47381 * 126.42457 * 359.96222 * 8 2 1 10 10 O 1.21610 * 120.00354 * 269.72051 * 9 8 2 11 11 N 1.34784 * 119.99870 * 89.71553 * 9 8 2 12 12 C 1.47139 * 121.01235 * 359.97438 * 11 9 8 13 13 C 1.53051 * 107.68330 * 122.55801 * 12 11 9 14 14 C 1.51141 * 111.10889 * 54.40471 * 13 12 11 15 15 H 1.09007 * 108.45737 * 185.38897 * 14 13 12 16 16 C 1.53990 * 113.17387 * 304.88039 * 14 13 12 17 17 H 1.08999 * 112.71472 * 284.03433 * 16 14 13 18 18 C 1.56019 * 100.39080 * 163.66318 * 16 14 13 19 19 C 1.54503 * 102.62035 * 323.14668 * 18 16 14 20 20 N 1.46467 * 113.23579 * 65.10518 * 14 13 12 21 21 C 1.36940 * 126.05449 * 29.51438 * 20 14 13 22 22 H 1.07999 * 119.99674 * 0.02562 * 21 20 14 23 23 C 1.38814 * 120.00093 * 180.02562 * 21 20 14 24 24 N 1.31624 * 119.99576 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00002 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46674 * 90.00490 * 25 23 21 27 27 H 1.48500 * 109.46996 * 209.99762 * 25 23 21 28 28 H 1.48493 * 109.47404 * 330.00249 * 25 23 21 29 29 C 1.46525 * 121.01389 * 179.72145 * 11 9 8 30 30 H 1.08998 * 109.46980 * 270.15209 * 1 2 3 31 31 H 1.08996 * 109.46680 * 30.15401 * 1 2 3 32 32 H 1.09004 * 109.46740 * 150.14869 * 1 2 3 33 33 H 1.09001 * 109.81988 * 242.10651 * 12 11 9 34 34 H 1.09000 * 109.81617 * 3.01791 * 12 11 9 35 35 H 1.09000 * 109.14890 * 174.81693 * 13 12 11 36 36 H 1.09002 * 109.15132 * 293.98022 * 13 12 11 37 37 H 1.09000 * 110.78302 * 204.86193 * 18 16 14 38 38 H 1.09001 * 110.77447 * 81.42490 * 18 16 14 39 39 H 1.08994 * 109.89850 * 263.44348 * 19 18 16 40 40 H 1.09000 * 110.04809 * 142.28974 * 19 18 16 41 41 H 0.96995 * 119.99771 * 180.02562 * 24 23 21 42 42 H 1.09008 * 109.34732 * 355.83293 * 29 11 9 43 43 H 1.08996 * 109.34820 * 115.37895 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0020 2.0047 0.0004 5 7 3.6340 0.6554 -0.0069 6 6 3.6600 -0.6497 -0.0052 7 17 5.0842 -1.6421 -0.0112 8 6 2.3241 -1.1130 0.0030 9 6 1.8859 -2.5201 0.0075 10 8 1.7106 -3.0991 1.0625 11 7 1.6795 -3.1654 -1.1577 12 6 1.8841 -2.4865 -2.4469 13 6 2.9165 -3.2929 -3.2383 14 6 2.4976 -4.7397 -3.3631 15 1 3.3034 -5.2918 -3.8469 16 6 2.2198 -5.4095 -2.0046 17 1 3.1326 -5.6593 -1.4639 18 6 1.4254 -6.6694 -2.4692 19 6 0.5882 -6.1248 -3.6480 20 7 1.2764 -4.9218 -4.1509 21 6 0.8496 -4.1174 -5.1736 22 1 1.4339 -3.2567 -5.4634 23 6 -0.3341 -4.4084 -5.8379 24 7 -1.0464 -5.4572 -5.4843 25 14 -0.9166 -3.3107 -7.2325 26 1 -0.3635 -3.8079 -8.5178 27 1 -2.4003 -3.3307 -7.2915 28 1 -0.4493 -1.9210 -6.9970 29 6 1.2496 -4.5661 -1.1791 30 1 -0.3633 0.0027 1.0276 31 1 -0.3632 0.8886 -0.5162 32 1 -0.3633 -0.8914 -0.5115 33 1 0.9442 -2.4479 -2.9976 34 1 2.2557 -1.4759 -2.2774 35 1 3.0185 -2.8630 -4.2347 36 1 3.8781 -3.2417 -2.7276 37 1 0.7784 -7.0346 -1.6716 38 1 2.1048 -7.4521 -2.8065 39 1 -0.4121 -5.8631 -3.3030 40 1 0.5241 -6.8731 -4.4380 41 1 -1.8733 -5.6607 -5.9486 42 1 1.2176 -4.9497 -0.1593 43 1 0.2544 -4.6317 -1.6186 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036734016.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:16 Heat of formation + Delta-G solvation = 44.811135 kcal Electronic energy + Delta-G solvation = -28604.556624 eV Core-core repulsion = 24712.184728 eV Total energy + Delta-G solvation = -3892.371897 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.70964 -41.19779 -39.47514 -37.93732 -36.42382 -34.59851 -33.74384 -33.15726 -32.48825 -30.94222 -29.29609 -28.46262 -26.85389 -25.73536 -23.97066 -23.15253 -23.07033 -21.75843 -20.64835 -19.71063 -18.79462 -18.13468 -17.82930 -17.09854 -16.75299 -16.36283 -16.26547 -16.19673 -15.89714 -15.62969 -15.08562 -14.71026 -14.40138 -14.09101 -14.07930 -13.88906 -13.83455 -13.34874 -13.14715 -13.07866 -12.99148 -12.82062 -12.80050 -12.60789 -12.52419 -12.20408 -11.95250 -11.89454 -11.62280 -11.48061 -11.43680 -11.16487 -11.00133 -10.59427 -10.54944 -9.84157 -9.57863 -8.75161 -7.74251 -5.06829 0.36109 0.43933 0.99633 1.46914 1.50360 1.51868 1.59188 1.82221 2.19513 2.56269 3.39939 3.45255 3.59261 3.66916 3.82757 3.87253 3.99459 4.04320 4.12555 4.25788 4.29932 4.48881 4.59569 4.61395 4.62104 4.68111 4.75004 4.81224 4.87021 4.91424 5.01443 5.04118 5.15037 5.28535 5.29546 5.42954 5.56154 5.63254 5.74916 5.86719 5.96602 6.23892 6.29360 6.46735 7.13025 7.20154 7.89409 8.56656 9.37157 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.004338 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.279790 B = 6453.229745 C = 7209.208030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.161 3.839 3 N -0.426 5.426 4 H 0.467 0.533 5 N -0.290 5.290 6 C 0.150 3.850 7 Cl 0.017 6.983 8 C -0.293 4.293 9 C 0.602 3.398 10 O -0.574 6.574 11 N -0.586 5.586 12 C 0.132 3.868 13 C -0.122 4.122 14 C 0.165 3.835 15 H 0.013 0.987 16 C -0.104 4.104 17 H 0.101 0.899 18 C -0.129 4.129 19 C 0.186 3.814 20 N -0.606 5.606 21 C -0.215 4.215 22 H 0.087 0.913 23 C -0.065 4.065 24 N -0.952 5.952 25 Si 0.964 3.036 26 H -0.295 1.295 27 H -0.301 1.301 28 H -0.265 1.265 29 C 0.133 3.867 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.015 0.985 40 H 0.003 0.997 41 H 0.242 0.758 42 H 0.083 0.917 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.124 12.335 11.405 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.028 3.972 3 N -0.138 5.138 4 H 0.317 0.683 5 N -0.116 5.116 6 C -0.042 4.042 7 Cl 0.045 6.955 8 C -0.309 4.309 9 C 0.389 3.611 10 O -0.454 6.454 11 N -0.316 5.316 12 C 0.009 3.991 13 C -0.161 4.161 14 C 0.058 3.942 15 H 0.031 0.969 16 C -0.124 4.124 17 H 0.119 0.881 18 C -0.168 4.168 19 C 0.061 3.939 20 N -0.331 5.331 21 C -0.344 4.344 22 H 0.105 0.895 23 C -0.258 4.258 24 N -0.602 5.602 25 Si 0.794 3.206 26 H -0.223 1.223 27 H -0.229 1.229 28 H -0.189 1.189 29 C 0.011 3.989 30 H 0.125 0.875 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.033 0.967 40 H 0.021 0.979 41 H 0.051 0.949 42 H 0.102 0.898 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.716 13.022 11.793 18.808 hybrid contribution -0.943 -0.375 -1.211 1.580 sum 5.772 12.648 10.581 17.471 Atomic orbital electron populations 1.20790 0.83459 1.05994 1.05675 1.21741 0.95945 0.85241 0.94320 1.45813 1.01844 1.09404 1.56731 0.68288 1.77077 0.98165 1.10121 1.26260 1.22585 0.88683 0.90805 1.02141 1.98411 1.35301 1.65017 1.96748 1.19687 0.91904 0.94163 1.25138 1.17347 0.75954 0.85002 0.82771 1.90729 1.53878 1.68885 1.31924 1.48002 1.65267 1.12393 1.05972 1.21541 0.99661 0.95465 0.82422 1.21508 0.98410 0.95788 1.00401 1.20424 0.88905 0.94429 0.90427 0.96923 1.22632 0.98502 0.95557 0.95705 0.88051 1.23015 0.98906 0.96705 0.98127 1.20970 0.93370 0.87590 0.92011 1.44520 1.23058 1.28579 1.36965 1.19299 1.03173 1.05144 1.06777 0.89497 1.25466 0.98416 0.99643 1.02285 1.70171 1.16199 1.29580 1.44243 0.85275 0.76553 0.79164 0.79575 1.22257 1.22859 1.18945 1.21308 0.97224 0.79943 1.00442 0.87481 0.86433 0.90406 0.91674 0.89548 0.91220 0.90703 0.90147 0.91001 0.96659 0.97854 0.94888 0.89840 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.36 10.25 71.24 0.73 -0.63 16 2 C 0.16 3.13 7.29 42.15 0.31 3.44 16 3 N -0.43 -6.89 7.28 -46.79 -0.34 -7.23 16 4 H 0.47 3.46 8.96 -213.43 -1.91 1.54 16 5 N -0.29 -6.81 12.64 -48.95 -0.62 -7.43 16 6 C 0.15 3.97 7.86 85.66 0.67 4.65 16 7 Cl 0.02 0.45 29.19 -2.72 -0.08 0.37 16 8 C -0.29 -7.88 3.87 -20.13 -0.08 -7.96 16 9 C 0.60 19.37 7.06 86.65 0.61 19.98 16 10 O -0.57 -21.95 16.53 -4.06 -0.07 -22.01 16 11 N -0.59 -18.86 2.94 -824.38 -2.42 -21.28 16 12 C 0.13 4.13 6.26 86.27 0.54 4.67 16 13 C -0.12 -3.97 5.19 30.01 0.16 -3.82 16 14 C 0.16 6.20 2.85 44.73 0.13 6.33 16 15 H 0.01 0.51 8.14 -2.38 -0.02 0.50 16 16 C -0.10 -3.45 3.84 -9.49 -0.04 -3.48 16 17 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 18 C -0.13 -4.53 6.28 32.15 0.20 -4.33 16 19 C 0.19 8.70 4.64 86.71 0.40 9.10 16 20 N -0.61 -28.25 3.12 -674.35 -2.11 -30.35 16 21 C -0.21 -10.90 9.02 84.03 0.76 -10.15 16 22 H 0.09 4.17 6.69 -2.91 -0.02 4.15 16 23 C -0.07 -3.52 5.49 84.86 0.47 -3.05 16 24 N -0.95 -55.12 10.38 21.65 0.22 -54.90 16 25 Si 0.96 43.67 29.55 68.60 2.03 45.70 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 29 C 0.13 4.56 5.44 86.30 0.47 5.03 16 30 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.08 1.40 7.96 -2.39 -0.02 1.39 16 33 H 0.06 2.39 7.48 -2.39 -0.02 2.37 16 34 H 0.09 2.40 6.35 -2.39 -0.02 2.38 16 35 H 0.07 2.34 7.01 -2.39 -0.02 2.32 16 36 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.08 2.54 7.97 -2.39 -0.02 2.52 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.02 0.80 6.99 -2.39 -0.02 0.79 16 40 H 0.00 0.17 7.56 -2.39 -0.02 0.16 16 41 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 42 H 0.08 2.82 6.99 -2.38 -0.02 2.81 16 43 H 0.06 2.20 6.79 -2.39 -0.02 2.18 16 Total: -1.00 -69.36 356.23 1.09 -68.27 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -0.85 Total: 9.10 kcal Atomic # 6 Polarization: 14.45 SS G_CDS: 5.33 Total: 19.78 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.26 Total: -121.20 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.07 Total: -22.01 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 17 Polarization: 0.45 SS G_CDS: -0.08 Total: 0.37 kcal Total: -69.36 1.09 -68.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036734016.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.079 kcal (2) G-P(sol) polarization free energy of solvation -69.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds