Wall clock time and date at job start Tue Mar 31 2020 21:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34232 * 126.28177 * 2 1 4 4 H 0.97000 * 125.73543 * 0.06557 * 3 2 1 5 5 N 1.39930 * 108.52065 * 180.30447 * 3 2 1 6 6 C 1.30531 * 108.89307 * 359.72516 * 5 3 2 7 7 Cl 1.73606 * 126.00188 * 180.02562 * 6 5 3 8 8 C 1.38065 * 126.27645 * 179.85195 * 2 1 3 9 9 C 1.47382 * 126.42763 * 359.96238 * 8 2 1 10 10 O 1.21613 * 119.99937 * 269.71541 * 9 8 2 11 11 N 1.34773 * 120.00126 * 89.98741 * 9 8 2 12 12 C 1.46602 * 119.68736 * 359.45533 * 11 9 8 13 13 C 1.54791 * 110.71236 * 228.03068 * 12 11 9 14 14 C 1.51514 * 106.79908 * 308.79546 * 13 12 11 15 15 H 1.08996 * 109.28724 * 306.62501 * 14 13 12 16 16 C 1.55367 * 107.78550 * 65.18895 * 14 13 12 17 17 H 1.08998 * 111.50845 * 49.83502 * 16 14 13 18 18 C 1.53748 * 100.21737 * 168.51030 * 16 14 13 19 19 C 1.55285 * 101.84243 * 320.90411 * 18 16 14 20 20 N 1.45467 * 116.86519 * 181.93042 * 14 13 12 21 21 C 1.36941 * 126.40675 * 30.88924 * 20 14 13 22 22 H 1.07997 * 119.99744 * 359.97438 * 21 20 14 23 23 C 1.38806 * 120.00145 * 179.97438 * 21 20 14 24 24 N 1.31629 * 120.00093 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00161 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46959 * 89.99863 * 25 23 21 27 27 H 1.48495 * 109.47429 * 210.00316 * 25 23 21 28 28 H 1.48503 * 109.47183 * 330.00230 * 25 23 21 29 29 C 1.47719 * 119.68943 * 179.72407 * 11 9 8 30 30 H 1.09003 * 109.46794 * 270.15071 * 1 2 3 31 31 H 1.09006 * 109.47005 * 30.14837 * 1 2 3 32 32 H 1.08997 * 109.47537 * 150.15025 * 1 2 3 33 33 H 1.08998 * 109.25036 * 348.13106 * 12 11 9 34 34 H 1.08997 * 109.25475 * 107.56191 * 12 11 9 35 35 H 1.09000 * 109.86756 * 189.65859 * 13 12 11 36 36 H 1.09002 * 110.48893 * 68.27394 * 13 12 11 37 37 H 1.09002 * 110.95276 * 79.04516 * 18 16 14 38 38 H 1.08998 * 110.95149 * 202.76323 * 18 16 14 39 39 H 1.09003 * 109.91955 * 263.13208 * 19 18 16 40 40 H 1.09001 * 110.08234 * 141.92636 * 19 18 16 41 41 H 0.96991 * 119.99892 * 179.97438 * 24 23 21 42 42 H 1.09002 * 110.07387 * 247.13199 * 29 11 9 43 43 H 1.08997 * 110.06859 * 8.70778 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 0.0009 5 7 3.6340 0.6552 -0.0071 6 6 3.6598 -0.6498 -0.0053 7 17 5.0841 -1.6423 -0.0115 8 6 2.3239 -1.1130 0.0029 9 6 1.8858 -2.5202 0.0073 10 8 1.7105 -3.0992 1.0623 11 7 1.6846 -3.1670 -1.1578 12 6 1.8920 -2.4607 -2.4256 13 6 0.6946 -2.6862 -3.3803 14 6 0.4639 -4.1821 -3.4476 15 1 1.3964 -4.6785 -3.7160 16 6 0.0197 -4.6578 -2.0368 17 1 -0.7907 -4.0433 -1.6447 18 6 -0.4475 -6.0853 -2.3648 19 6 -1.1510 -5.8836 -3.7344 20 7 -0.5971 -4.6446 -4.3287 21 6 -1.0075 -4.0465 -5.4903 22 1 -0.5287 -3.1397 -5.8291 23 6 -2.0389 -4.6057 -6.2321 24 7 -2.6228 -5.7107 -5.8189 25 14 -2.5992 -3.7895 -7.8161 26 1 -1.8178 -4.3326 -8.9561 27 1 -4.0428 -4.0633 -8.0304 28 1 -2.3822 -2.3234 -7.7212 29 6 1.2513 -4.5792 -1.1454 30 1 -0.3633 0.0027 1.0277 31 1 -0.3633 0.8887 -0.5162 32 1 -0.3634 -0.8913 -0.5115 33 1 1.9946 -1.3934 -2.2298 34 1 2.8035 -2.8283 -2.8969 35 1 0.9343 -2.3030 -4.3721 36 1 -0.1974 -2.1904 -2.9972 37 1 0.4022 -6.7616 -2.4588 38 1 -1.1508 -6.4473 -1.6149 39 1 -2.2258 -5.7769 -3.5877 40 1 -0.9481 -6.7320 -4.3880 41 1 -3.3437 -6.1012 -6.3371 42 1 2.0416 -5.2165 -1.5422 43 1 0.9981 -4.8838 -0.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036734017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:21 Heat of formation + Delta-G solvation = 65.353018 kcal Electronic energy + Delta-G solvation = -28010.881469 eV Core-core repulsion = 24119.400335 eV Total energy + Delta-G solvation = -3891.481134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.86531 -39.88995 -38.08358 -37.05410 -35.29884 -33.01790 -32.75502 -31.57733 -31.53147 -29.56456 -28.26041 -27.55075 -24.97062 -23.89707 -22.37465 -22.23367 -21.88306 -20.08746 -19.71082 -18.87914 -17.86517 -16.89820 -16.29545 -15.82415 -15.51480 -15.34647 -15.15144 -14.86143 -14.35869 -13.94904 -13.74479 -13.69436 -13.43402 -13.01700 -12.98430 -12.70041 -12.50696 -12.39464 -12.20256 -11.95560 -11.66109 -11.48623 -11.40269 -11.01073 -10.84822 -10.79575 -10.73747 -10.19184 -10.12407 -9.91449 -9.80357 -9.73920 -9.64500 -9.48775 -8.94648 -8.64020 -8.48426 -6.85087 -5.73418 -3.06512 1.19969 1.23294 1.91522 2.54999 2.59845 3.19540 3.37378 3.42190 3.44411 4.19173 4.46617 4.48800 4.61030 4.85090 5.06090 5.10592 5.12090 5.24628 5.35624 5.40646 5.47138 5.53451 5.59757 5.64054 5.67459 5.80893 5.90998 6.04572 6.14465 6.19257 6.23585 6.36533 6.50385 6.60413 6.63422 6.64846 6.83999 6.96663 7.05859 7.48904 7.54264 7.60681 7.79893 8.22881 8.23865 9.17670 9.81367 10.49614 11.39048 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.003359 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.125019 B = 8333.313638 C = 8934.267772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.144 3.856 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.277 5.277 6 C 0.160 3.840 7 Cl 0.020 6.980 8 C -0.263 4.263 9 C 0.594 3.406 10 O -0.536 6.536 11 N -0.594 5.594 12 C 0.114 3.886 13 C -0.127 4.127 14 C 0.166 3.834 15 H 0.021 0.979 16 C -0.123 4.123 17 H 0.079 0.921 18 C -0.135 4.135 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.225 4.225 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.909 3.091 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.126 3.874 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.252 0.748 42 H 0.070 0.930 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.037 11.185 11.915 18.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.012 3.988 3 N -0.157 5.157 4 H 0.295 0.705 5 N -0.103 5.103 6 C -0.033 4.033 7 Cl 0.048 6.952 8 C -0.278 4.278 9 C 0.380 3.620 10 O -0.413 6.413 11 N -0.326 5.326 12 C -0.010 4.010 13 C -0.166 4.166 14 C 0.058 3.942 15 H 0.038 0.962 16 C -0.143 4.143 17 H 0.098 0.902 18 C -0.174 4.174 19 C 0.052 3.948 20 N -0.320 5.320 21 C -0.353 4.353 22 H 0.096 0.904 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.739 3.261 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.208 1.208 29 C 0.004 3.996 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.089 0.911 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 9.625 11.757 12.256 19.521 hybrid contribution -0.708 0.194 -1.042 1.275 sum 8.917 11.951 11.214 18.657 Atomic orbital electron populations 1.20667 0.85476 1.05299 1.04616 1.21443 0.94946 0.85878 0.96524 1.45829 1.02973 1.08662 1.58250 0.70546 1.77141 0.96595 1.10667 1.25867 1.22528 0.88730 0.90462 1.01599 1.98422 1.35238 1.64818 1.96734 1.19767 0.91104 0.94703 1.22234 1.17188 0.76869 0.84248 0.83701 1.90770 1.51772 1.67811 1.30912 1.48227 1.66180 1.12625 1.05602 1.21885 0.98808 0.96472 0.83827 1.22041 0.96906 0.99011 0.98630 1.20675 0.92369 0.92111 0.89071 0.96155 1.22628 0.96480 0.98548 0.96645 0.90222 1.22697 1.00086 0.94693 0.99915 1.21528 0.96635 0.88605 0.87985 1.44216 1.38177 1.26534 1.23058 1.18976 1.13615 1.06031 0.96719 0.90443 1.24780 0.98851 0.97667 0.99080 1.69940 1.26913 1.20775 1.39200 0.86173 0.77837 0.78553 0.83500 1.21651 1.21736 1.20779 1.21672 0.96249 0.80017 1.01634 0.88867 0.89771 0.88564 0.90721 0.91579 0.90637 0.91403 0.92274 0.92029 0.92776 0.94386 0.93771 0.91127 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.25 36.01 0.37 -0.39 16 2 C 0.14 1.43 7.04 -81.60 -0.57 0.85 16 3 N -0.45 -3.87 7.28 33.86 0.25 -3.62 16 4 H 0.45 2.12 8.96 -182.73 -1.64 0.48 16 5 N -0.28 -3.27 12.64 33.18 0.42 -2.85 16 6 C 0.16 2.05 7.89 -16.91 -0.13 1.91 16 7 Cl 0.02 0.24 29.19 -51.86 -1.51 -1.27 16 8 C -0.26 -3.39 3.86 -105.04 -0.41 -3.80 16 9 C 0.59 8.90 7.03 -12.54 -0.09 8.81 16 10 O -0.54 -9.63 16.46 5.27 0.09 -9.54 16 11 N -0.59 -8.51 3.00 -173.25 -0.52 -9.03 16 12 C 0.11 1.52 6.23 -3.04 -0.02 1.50 16 13 C -0.13 -2.03 5.52 -26.54 -0.15 -2.18 16 14 C 0.17 3.16 2.57 -67.98 -0.17 2.99 16 15 H 0.02 0.41 7.92 -51.93 -0.41 0.00 16 16 C -0.12 -2.07 2.86 -89.36 -0.26 -2.33 16 17 H 0.08 1.43 8.11 -51.93 -0.42 1.01 16 18 C -0.14 -2.41 6.54 -25.13 -0.16 -2.58 16 19 C 0.18 4.12 5.45 -1.92 -0.01 4.11 16 20 N -0.60 -14.32 3.35 -163.10 -0.55 -14.87 16 21 C -0.23 -5.94 9.86 -15.06 -0.15 -6.09 16 22 H 0.08 1.96 7.18 -52.49 -0.38 1.58 16 23 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 24 N -0.92 -26.36 10.43 55.49 0.58 -25.78 16 25 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 29 C 0.13 1.87 5.96 -3.76 -0.02 1.85 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.88 7.96 -51.93 -0.41 0.46 16 33 H 0.07 0.91 6.08 -51.93 -0.32 0.60 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.08 1.25 7.59 -51.93 -0.39 0.85 16 36 H 0.07 1.11 8.11 -51.93 -0.42 0.69 16 37 H 0.06 0.98 8.12 -51.93 -0.42 0.56 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.05 1.41 7.21 -51.93 -0.37 1.03 16 40 H 0.04 0.98 7.76 -51.93 -0.40 0.58 16 41 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 43 H 0.09 1.38 6.99 -51.93 -0.36 1.02 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -32.56 360.72 -9.90 -42.47 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.20 Total: -1.75 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.87 Total: 4.38 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: 0.18 Total: -56.15 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.09 Total: -9.54 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.51 Total: -1.27 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.56 -9.90 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036734017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.819 kcal (2) G-P(sol) polarization free energy of solvation -32.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds