Wall clock time and date at job start Tue Mar 31 2020 21:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.34232 * 126.28177 * 2 1 4 4 H 0.97000 * 125.73543 * 0.06557 * 3 2 1 5 5 N 1.39930 * 108.52065 * 180.30447 * 3 2 1 6 6 C 1.30531 * 108.89307 * 359.72516 * 5 3 2 7 7 Cl 1.73606 * 126.00188 * 180.02562 * 6 5 3 8 8 C 1.38065 * 126.27645 * 179.85195 * 2 1 3 9 9 C 1.47382 * 126.42763 * 359.96238 * 8 2 1 10 10 O 1.21613 * 119.99937 * 269.71541 * 9 8 2 11 11 N 1.34773 * 120.00126 * 89.98741 * 9 8 2 12 12 C 1.46602 * 119.68736 * 359.45533 * 11 9 8 13 13 C 1.54791 * 110.71236 * 228.03068 * 12 11 9 14 14 C 1.51514 * 106.79908 * 308.79546 * 13 12 11 15 15 H 1.08996 * 109.28724 * 306.62501 * 14 13 12 16 16 C 1.55367 * 107.78550 * 65.18895 * 14 13 12 17 17 H 1.08998 * 111.50845 * 49.83502 * 16 14 13 18 18 C 1.53748 * 100.21737 * 168.51030 * 16 14 13 19 19 C 1.55285 * 101.84243 * 320.90411 * 18 16 14 20 20 N 1.45467 * 116.86519 * 181.93042 * 14 13 12 21 21 C 1.36941 * 126.40675 * 30.88924 * 20 14 13 22 22 H 1.07997 * 119.99744 * 359.97438 * 21 20 14 23 23 C 1.38806 * 120.00145 * 179.97438 * 21 20 14 24 24 N 1.31629 * 120.00093 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00161 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46959 * 89.99863 * 25 23 21 27 27 H 1.48495 * 109.47429 * 210.00316 * 25 23 21 28 28 H 1.48503 * 109.47183 * 330.00230 * 25 23 21 29 29 C 1.47719 * 119.68943 * 179.72407 * 11 9 8 30 30 H 1.09003 * 109.46794 * 270.15071 * 1 2 3 31 31 H 1.09006 * 109.47005 * 30.14837 * 1 2 3 32 32 H 1.08997 * 109.47537 * 150.15025 * 1 2 3 33 33 H 1.08998 * 109.25036 * 348.13106 * 12 11 9 34 34 H 1.08997 * 109.25475 * 107.56191 * 12 11 9 35 35 H 1.09000 * 109.86756 * 189.65859 * 13 12 11 36 36 H 1.09002 * 110.48893 * 68.27394 * 13 12 11 37 37 H 1.09002 * 110.95276 * 79.04516 * 18 16 14 38 38 H 1.08998 * 110.95149 * 202.76323 * 18 16 14 39 39 H 1.09003 * 109.91955 * 263.13208 * 19 18 16 40 40 H 1.09001 * 110.08234 * 141.92636 * 19 18 16 41 41 H 0.96991 * 119.99892 * 179.97438 * 24 23 21 42 42 H 1.09002 * 110.07387 * 247.13199 * 29 11 9 43 43 H 1.08997 * 110.06859 * 8.70778 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3014 1.0821 0.0000 4 1 2.0019 2.0047 0.0009 5 7 3.6340 0.6552 -0.0071 6 6 3.6598 -0.6498 -0.0053 7 17 5.0841 -1.6423 -0.0115 8 6 2.3239 -1.1130 0.0029 9 6 1.8858 -2.5202 0.0073 10 8 1.7105 -3.0992 1.0623 11 7 1.6846 -3.1670 -1.1578 12 6 1.8920 -2.4607 -2.4256 13 6 0.6946 -2.6862 -3.3803 14 6 0.4639 -4.1821 -3.4476 15 1 1.3964 -4.6785 -3.7160 16 6 0.0197 -4.6578 -2.0368 17 1 -0.7907 -4.0433 -1.6447 18 6 -0.4475 -6.0853 -2.3648 19 6 -1.1510 -5.8836 -3.7344 20 7 -0.5971 -4.6446 -4.3287 21 6 -1.0075 -4.0465 -5.4903 22 1 -0.5287 -3.1397 -5.8291 23 6 -2.0389 -4.6057 -6.2321 24 7 -2.6228 -5.7107 -5.8189 25 14 -2.5992 -3.7895 -7.8161 26 1 -1.8178 -4.3326 -8.9561 27 1 -4.0428 -4.0633 -8.0304 28 1 -2.3822 -2.3234 -7.7212 29 6 1.2513 -4.5792 -1.1454 30 1 -0.3633 0.0027 1.0277 31 1 -0.3633 0.8887 -0.5162 32 1 -0.3634 -0.8913 -0.5115 33 1 1.9946 -1.3934 -2.2298 34 1 2.8035 -2.8283 -2.8969 35 1 0.9343 -2.3030 -4.3721 36 1 -0.1974 -2.1904 -2.9972 37 1 0.4022 -6.7616 -2.4588 38 1 -1.1508 -6.4473 -1.6149 39 1 -2.2258 -5.7769 -3.5877 40 1 -0.9481 -6.7320 -4.3880 41 1 -3.3437 -6.1012 -6.3371 42 1 2.0416 -5.2165 -1.5422 43 1 0.9981 -4.8838 -0.1299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036734017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:20 Heat of formation + Delta-G solvation = 44.301426 kcal Electronic energy + Delta-G solvation = -28011.794334 eV Core-core repulsion = 24119.400335 eV Total energy + Delta-G solvation = -3892.393999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.73416 -41.15783 -39.48970 -37.95105 -36.73358 -34.53079 -33.74832 -32.99397 -32.57467 -31.13176 -29.67930 -28.44148 -26.66204 -25.32717 -23.73996 -23.07987 -22.97932 -21.81753 -21.07595 -19.98858 -18.92216 -18.32655 -17.69393 -16.98040 -16.79227 -16.37671 -16.24954 -16.22102 -15.86115 -15.58096 -15.06038 -14.79110 -14.44198 -14.24380 -14.08922 -13.98131 -13.77492 -13.34934 -13.27085 -13.09469 -13.04180 -13.00183 -12.81462 -12.67122 -12.42602 -12.10902 -11.97390 -11.90052 -11.73967 -11.56688 -11.47420 -11.05661 -10.93812 -10.66565 -10.56394 -9.85264 -9.69209 -8.82659 -7.79183 -5.13187 0.34903 0.43661 0.98660 1.44686 1.48907 1.50162 1.58200 1.78655 2.12962 2.53848 3.37740 3.39936 3.48825 3.65687 3.83739 3.84635 3.94028 4.02294 4.07773 4.23383 4.27947 4.43781 4.53471 4.59931 4.63008 4.70172 4.73769 4.78737 4.82941 4.87034 4.95071 5.04220 5.11124 5.13962 5.25642 5.49268 5.58267 5.59332 5.71387 5.82331 5.96278 6.23035 6.25267 6.34693 7.09317 7.13936 7.84443 8.53165 9.32672 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.016124 B = 0.003359 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.125019 B = 8333.313638 C = 8934.267772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.164 3.836 3 N -0.426 5.426 4 H 0.466 0.534 5 N -0.291 5.291 6 C 0.150 3.850 7 Cl 0.017 6.983 8 C -0.295 4.295 9 C 0.601 3.399 10 O -0.570 6.570 11 N -0.594 5.594 12 C 0.125 3.875 13 C -0.117 4.117 14 C 0.156 3.844 15 H 0.020 0.980 16 C -0.105 4.105 17 H 0.070 0.930 18 C -0.121 4.121 19 C 0.182 3.818 20 N -0.615 5.615 21 C -0.226 4.226 22 H 0.088 0.912 23 C -0.069 4.069 24 N -0.954 5.954 25 Si 0.971 3.029 26 H -0.290 1.290 27 H -0.299 1.299 28 H -0.265 1.265 29 C 0.133 3.867 30 H 0.105 0.895 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.018 0.982 40 H 0.002 0.998 41 H 0.244 0.756 42 H 0.083 0.917 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.884 13.539 12.578 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.030 3.970 3 N -0.138 5.138 4 H 0.317 0.683 5 N -0.117 5.117 6 C -0.043 4.043 7 Cl 0.044 6.956 8 C -0.311 4.311 9 C 0.388 3.612 10 O -0.449 6.449 11 N -0.325 5.325 12 C 0.002 3.998 13 C -0.156 4.156 14 C 0.049 3.951 15 H 0.037 0.963 16 C -0.126 4.126 17 H 0.089 0.911 18 C -0.160 4.160 19 C 0.057 3.943 20 N -0.339 5.339 21 C -0.355 4.355 22 H 0.105 0.895 23 C -0.261 4.261 24 N -0.604 5.604 25 Si 0.801 3.199 26 H -0.218 1.218 27 H -0.226 1.226 28 H -0.190 1.190 29 C 0.011 3.989 30 H 0.124 0.876 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.036 0.964 40 H 0.020 0.980 41 H 0.053 0.947 42 H 0.101 0.899 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.516 14.173 12.926 21.876 hybrid contribution -0.966 -0.498 -1.225 1.638 sum 9.550 13.675 11.700 20.375 Atomic orbital electron populations 1.20802 0.83525 1.06086 1.05658 1.21723 0.95855 0.85231 0.94210 1.45842 1.01857 1.09469 1.56626 0.68306 1.77096 0.98170 1.10214 1.26206 1.22590 0.88675 0.90800 1.02195 1.98415 1.35399 1.64987 1.96767 1.19688 0.91770 0.94258 1.25339 1.17394 0.75867 0.84881 0.83040 1.90749 1.53293 1.68806 1.32027 1.48238 1.65881 1.12378 1.05962 1.21819 0.97652 0.97543 0.82761 1.21932 0.97953 0.96456 0.99286 1.20896 0.90740 0.94262 0.89159 0.96277 1.22449 0.97091 0.97310 0.95718 0.91135 1.22570 1.00572 0.95937 0.96903 1.21295 0.95300 0.87456 0.90215 1.44495 1.39193 1.26877 1.23375 1.19393 1.12905 1.05940 0.97290 0.89460 1.25579 0.99673 0.98551 1.02343 1.70166 1.27490 1.22395 1.40319 0.85173 0.76552 0.78466 0.79751 1.21778 1.22622 1.19001 1.21559 0.95417 0.80822 1.01068 0.87631 0.86547 0.90158 0.88945 0.90623 0.90933 0.91782 0.90524 0.90260 0.96380 0.98012 0.94706 0.89905 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.25 71.24 0.73 -0.45 16 2 C 0.16 2.75 7.04 42.15 0.30 3.05 16 3 N -0.43 -5.99 7.28 -46.79 -0.34 -6.33 16 4 H 0.47 2.66 8.96 -213.43 -1.91 0.74 16 5 N -0.29 -6.17 12.64 -48.95 -0.62 -6.79 16 6 C 0.15 3.55 7.89 85.66 0.68 4.23 16 7 Cl 0.02 0.38 29.19 -2.72 -0.08 0.30 16 8 C -0.30 -6.98 3.86 -20.14 -0.08 -7.06 16 9 C 0.60 16.97 7.03 86.65 0.61 17.58 16 10 O -0.57 -19.79 16.46 -4.07 -0.07 -19.86 16 11 N -0.59 -15.82 3.00 -820.28 -2.46 -18.29 16 12 C 0.13 3.05 6.23 86.97 0.54 3.59 16 13 C -0.12 -3.56 5.52 30.72 0.17 -3.39 16 14 C 0.16 5.81 2.57 45.51 0.12 5.93 16 15 H 0.02 0.75 7.92 -2.39 -0.02 0.73 16 16 C -0.11 -3.44 2.86 -9.98 -0.03 -3.47 16 17 H 0.07 2.46 8.11 -2.39 -0.02 2.44 16 18 C -0.12 -4.25 6.54 31.63 0.21 -4.05 16 19 C 0.18 8.77 5.45 86.85 0.47 9.25 16 20 N -0.61 -29.88 3.35 -669.93 -2.24 -32.12 16 21 C -0.23 -11.99 9.86 84.03 0.83 -11.16 16 22 H 0.09 4.34 7.18 -2.91 -0.02 4.32 16 23 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 24 N -0.95 -56.67 10.43 21.65 0.23 -56.44 16 25 Si 0.97 44.57 29.55 68.60 2.03 46.59 16 26 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 27 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 29 C 0.13 3.71 5.96 85.89 0.51 4.22 16 30 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.12 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.08 1.26 7.96 -2.39 -0.02 1.24 16 33 H 0.09 1.99 6.08 -2.39 -0.01 1.97 16 34 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 2.26 7.59 -2.39 -0.02 2.24 16 36 H 0.06 2.00 8.11 -2.39 -0.02 1.98 16 37 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 38 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.02 0.98 7.21 -2.39 -0.02 0.96 16 40 H 0.00 0.09 7.76 -2.39 -0.02 0.07 16 41 H 0.24 14.22 8.31 -92.72 -0.77 13.45 16 42 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 43 H 0.09 2.62 6.99 -2.39 -0.02 2.61 16 Total: -1.00 -72.48 360.72 1.10 -71.38 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -0.86 Total: 6.64 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 5.52 Total: 14.92 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -5.44 Total: -119.97 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.07 Total: -19.86 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: 0.38 SS G_CDS: -0.08 Total: 0.30 kcal Total: -72.48 1.10 -71.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036734017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.681 kcal (2) G-P(sol) polarization free energy of solvation -72.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds