Wall clock time and date at job start Tue Mar 31 2020 21:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34232 * 126.28120 * 2 1 4 4 H 0.97008 * 125.73999 * 359.95892 * 3 2 1 5 5 N 1.39935 * 108.52596 * 180.23319 * 3 2 1 6 6 C 1.30534 * 108.88946 * 359.76640 * 5 3 2 7 7 Cl 1.73593 * 126.00348 * 180.02562 * 6 5 3 8 8 C 1.38068 * 126.28244 * 179.83890 * 2 1 3 9 9 C 1.47383 * 126.42177 * 0.02935 * 8 2 1 10 10 O 1.21607 * 120.00128 * 269.71814 * 9 8 2 11 11 N 1.34779 * 119.99996 * 89.71570 * 9 8 2 12 12 C 1.47558 * 125.67384 * 359.97438 * 11 9 8 13 13 C 1.55183 * 105.00703 * 203.88410 * 12 11 9 14 14 C 1.53712 * 101.44107 * 324.53137 * 13 12 11 15 15 C 1.53662 * 111.46973 * 154.97062 * 14 13 12 16 16 C 1.55184 * 101.41716 * 155.06394 * 15 14 13 17 17 N 1.47565 * 105.00577 * 324.49867 * 16 15 14 18 18 C 1.36936 * 125.67829 * 203.85765 * 17 16 15 19 19 H 1.07997 * 120.00291 * 180.02562 * 18 17 16 20 20 C 1.38814 * 119.99649 * 0.02562 * 18 17 16 21 21 N 1.31620 * 120.00032 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99873 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46840 * 90.00365 * 22 20 18 24 24 H 1.48498 * 109.46949 * 210.00011 * 22 20 18 25 25 H 1.48494 * 109.47262 * 330.00280 * 22 20 18 26 26 C 1.47408 * 108.65271 * 23.86112 * 17 16 15 27 27 C 1.47402 * 125.67279 * 180.02562 * 11 9 8 28 28 H 1.08999 * 109.46878 * 270.16839 * 1 2 3 29 29 H 1.08997 * 109.47265 * 30.16063 * 1 2 3 30 30 H 1.08994 * 109.47226 * 150.16852 * 1 2 3 31 31 H 1.09003 * 110.33419 * 322.76559 * 12 11 9 32 32 H 1.08993 * 110.33391 * 84.89644 * 12 11 9 33 33 H 1.08999 * 111.03419 * 82.54699 * 13 12 11 34 34 H 1.09004 * 111.03684 * 206.43546 * 13 12 11 35 35 H 1.08995 * 111.03265 * 273.10085 * 15 14 13 36 36 H 1.09004 * 111.03250 * 37.02725 * 15 14 13 37 37 H 1.09000 * 110.33231 * 205.62101 * 16 15 14 38 38 H 1.08993 * 110.42387 * 83.43045 * 16 15 14 39 39 H 0.96995 * 119.99947 * 179.97438 * 21 20 18 40 40 H 1.08996 * 109.98585 * 238.54987 * 26 17 16 41 41 H 1.08996 * 110.02133 * 117.25876 * 26 17 16 42 42 H 1.09002 * 109.98537 * 297.20749 * 27 11 9 43 43 H 1.09004 * 109.99051 * 58.47350 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3013 1.0821 0.0000 4 1 2.0019 2.0048 -0.0006 5 7 3.6340 0.6553 -0.0054 6 6 3.6599 -0.6497 -0.0036 7 17 5.0841 -1.6422 -0.0079 8 6 2.3241 -1.1130 0.0031 9 6 1.8859 -2.5202 0.0065 10 8 1.7096 -3.0996 1.0610 11 7 1.6805 -3.1648 -1.1592 12 6 1.8549 -2.5857 -2.5051 13 6 0.9494 -3.4408 -3.4309 14 6 1.0964 -4.8342 -2.7987 15 6 -0.1200 -5.7218 -3.1049 16 6 0.4962 -7.1407 -2.9808 17 7 1.8708 -7.0071 -3.5005 18 6 2.6323 -8.0222 -4.0150 19 1 3.6319 -7.8205 -4.3706 20 6 2.1194 -9.3105 -4.0794 21 7 0.9014 -9.5563 -3.6454 22 14 3.1580 -10.6952 -4.7819 23 1 3.9418 -11.3285 -3.6910 24 1 2.2724 -11.7094 -5.4081 25 1 4.0854 -10.1486 -5.8047 26 6 2.2880 -5.5989 -3.3735 27 6 1.2432 -4.5653 -1.3016 28 1 -0.3633 0.0030 1.0277 29 1 -0.3633 0.8885 -0.5163 30 1 -0.3633 -0.8914 -0.5112 31 1 1.5308 -1.5450 -2.5146 32 1 2.8964 -2.6602 -2.8175 33 1 -0.0851 -3.1001 -3.3897 34 1 1.3206 -3.4343 -4.4558 35 1 -0.9090 -5.5721 -2.3680 36 1 -0.4906 -5.5430 -4.1143 37 1 -0.0686 -7.8528 -3.5825 38 1 0.5145 -7.4576 -1.9381 39 1 0.5429 -10.4565 -3.6908 40 1 2.5504 -5.1984 -4.3527 41 1 3.1407 -5.5217 -2.6990 42 1 1.9906 -5.2341 -0.8747 43 1 0.2856 -4.7093 -0.8013 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041345605.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:27 Heat of formation + Delta-G solvation = 67.686008 kcal Electronic energy + Delta-G solvation = -27561.926819 eV Core-core repulsion = 23670.546851 eV Total energy + Delta-G solvation = -3891.379968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.86774 -40.03672 -38.16399 -37.04423 -35.61187 -33.09244 -32.75565 -31.61320 -30.44691 -29.35983 -28.27061 -27.63410 -25.65884 -24.37392 -22.47571 -22.27818 -21.98879 -20.24727 -19.20350 -18.79809 -17.86087 -16.95720 -16.55986 -15.87372 -15.56990 -15.53313 -15.31194 -14.74039 -14.34000 -13.96627 -13.80201 -13.54757 -13.38990 -13.17131 -12.82615 -12.76822 -12.48189 -12.23143 -12.13710 -11.96824 -11.95149 -11.44652 -11.42896 -11.22208 -11.01604 -10.87915 -10.79078 -10.21875 -10.06899 -9.98189 -9.87874 -9.77835 -9.75254 -9.47798 -9.06411 -8.63735 -8.49893 -6.80951 -5.63056 -3.04248 1.16416 1.19354 1.87030 2.49944 2.57794 3.16534 3.42125 3.47152 3.48737 4.10314 4.40438 4.48708 4.50574 4.69735 4.75328 4.97852 4.99882 5.01574 5.30430 5.34440 5.35144 5.42100 5.51500 5.52212 5.60576 5.80604 5.82706 5.98849 6.03315 6.19774 6.26590 6.33785 6.36598 6.55677 6.58528 6.62891 6.76641 6.84574 6.91293 7.53634 7.59195 7.64611 7.87514 8.21311 8.37858 9.24274 9.84990 10.50018 11.40975 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.018908 B = 0.002995 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.538131 B = 9346.337485 C =10107.589513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.141 3.859 3 N -0.448 5.448 4 H 0.448 0.552 5 N -0.277 5.277 6 C 0.160 3.840 7 Cl 0.025 6.975 8 C -0.259 4.259 9 C 0.608 3.392 10 O -0.529 6.529 11 N -0.605 5.605 12 C 0.103 3.897 13 C -0.117 4.117 14 C -0.081 4.081 15 C -0.130 4.130 16 C 0.152 3.848 17 N -0.604 5.604 18 C -0.221 4.221 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.151 3.849 27 C 0.129 3.871 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.105 0.895 38 H 0.013 0.987 39 H 0.252 0.748 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.075 0.925 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 23.670 4.225 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.009 3.991 3 N -0.158 5.158 4 H 0.294 0.706 5 N -0.102 5.102 6 C -0.032 4.032 7 Cl 0.053 6.947 8 C -0.275 4.275 9 C 0.394 3.606 10 O -0.405 6.405 11 N -0.338 5.338 12 C -0.020 4.020 13 C -0.155 4.155 14 C -0.082 4.082 15 C -0.169 4.169 16 C 0.027 3.973 17 N -0.330 5.330 18 C -0.350 4.350 19 H 0.095 0.905 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.025 3.975 27 C 0.007 3.993 28 H 0.112 0.888 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.123 0.877 38 H 0.031 0.969 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.041 0.959 42 H 0.094 0.906 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.743 24.086 4.820 24.625 hybrid contribution 0.298 -0.944 -0.290 1.032 sum -1.444 23.142 4.530 23.625 Atomic orbital electron populations 1.20631 0.85616 1.04887 1.04688 1.21394 0.94841 0.85932 0.96973 1.45820 1.03046 1.08584 1.58340 0.70599 1.77166 0.96447 1.10691 1.25923 1.22588 0.88980 0.90456 1.01198 1.98443 1.35019 1.64621 1.96658 1.19757 0.91163 0.94395 1.22150 1.16688 0.77256 0.84099 0.82592 1.90813 1.51479 1.67760 1.30496 1.48612 1.66268 1.13531 1.05387 1.22378 1.00420 0.97231 0.81942 1.22675 0.99589 0.94301 0.98923 1.21556 0.98946 0.94636 0.93082 1.22870 0.94937 0.98524 1.00543 1.21995 0.85699 0.91837 0.97779 1.44631 1.13382 1.02423 1.72586 1.19066 0.96309 0.86807 1.32781 0.90550 1.24770 0.96951 0.97319 1.01601 1.69797 1.15087 1.19673 1.52514 0.86090 0.78978 0.81991 0.78545 1.21658 1.21697 1.20734 1.21148 0.93232 0.86221 0.96880 1.21904 1.00476 0.80786 0.96128 0.88843 0.89904 0.88816 0.91350 0.91165 0.90638 0.89527 0.92055 0.91588 0.87695 0.96891 0.93769 0.95493 0.95938 0.90643 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.25 36.01 0.37 -0.18 16 2 C 0.14 1.25 7.29 -81.60 -0.60 0.66 16 3 N -0.45 -3.50 7.28 33.86 0.25 -3.26 16 4 H 0.45 1.66 8.96 -182.71 -1.64 0.02 16 5 N -0.28 -3.18 12.64 33.17 0.42 -2.76 16 6 C 0.16 2.07 7.89 -16.91 -0.13 1.94 16 7 Cl 0.02 0.32 29.19 -51.86 -1.51 -1.19 16 8 C -0.26 -3.28 4.78 -105.04 -0.50 -3.78 16 9 C 0.61 9.32 7.20 -12.54 -0.09 9.23 16 10 O -0.53 -10.11 17.44 5.27 0.09 -10.02 16 11 N -0.60 -8.68 3.34 -172.14 -0.58 -9.25 16 12 C 0.10 1.21 6.65 -2.31 -0.02 1.19 16 13 C -0.12 -1.41 6.04 -25.20 -0.15 -1.56 16 14 C -0.08 -1.31 0.60 -153.98 -0.09 -1.40 16 15 C -0.13 -2.29 6.04 -25.23 -0.15 -2.44 16 16 C 0.15 3.58 5.85 -2.30 -0.01 3.57 16 17 N -0.60 -15.17 3.41 -170.40 -0.58 -15.76 16 18 C -0.22 -6.13 10.28 -15.06 -0.15 -6.28 16 19 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -26.71 10.09 55.49 0.56 -26.15 16 22 Si 0.91 22.10 29.55 -169.99 -5.02 17.07 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.04 6.40 -3.64 -0.02 3.01 16 27 C 0.13 2.11 6.02 -3.64 -0.02 2.08 16 28 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.61 7.96 -51.93 -0.41 0.20 16 31 H 0.07 0.66 7.70 -51.93 -0.40 0.26 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 34 H 0.09 1.00 7.62 -51.93 -0.40 0.61 16 35 H 0.06 0.96 7.62 -51.93 -0.40 0.57 16 36 H 0.07 1.13 8.07 -51.93 -0.42 0.71 16 37 H 0.11 2.80 5.89 -51.93 -0.31 2.50 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.03 0.53 7.53 -51.93 -0.39 0.14 16 41 H 0.02 0.48 7.61 -51.93 -0.40 0.08 16 42 H 0.08 1.44 7.61 -51.93 -0.40 1.04 16 43 H 0.07 1.15 7.53 -51.93 -0.39 0.76 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -34.18 365.94 -9.73 -43.91 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -7.20 Total: -3.72 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: -1.67 Total: 5.62 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.07 Total: -57.18 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.51 Total: -1.19 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.18 -9.73 -43.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041345605.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.594 kcal (2) G-P(sol) polarization free energy of solvation -34.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds