Wall clock time and date at job start Tue Mar 31 2020 20:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 119.99794 * 2 1 4 4 H 1.48506 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46852 * 299.99125 * 3 2 1 6 6 H 1.48493 * 109.47514 * 59.99130 * 3 2 1 7 7 C 1.38809 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.47437 * 126.05802 * 359.96688 * 9 7 2 11 11 C 1.54507 * 107.14555 * 178.39884 * 10 9 7 12 12 C 1.56027 * 102.61230 * 337.15870 * 11 10 9 13 13 H 1.09001 * 112.85252 * 157.78538 * 12 11 10 14 14 C 1.53093 * 106.39522 * 281.61442 * 12 11 10 15 15 C 1.52836 * 110.56861 * 164.58609 * 14 12 11 16 16 N 1.47158 * 107.97741 * 302.65113 * 15 14 12 17 17 C 1.34781 * 121.21076 * 237.26435 * 16 15 14 18 18 O 1.21283 * 119.99793 * 180.02562 * 17 16 15 19 19 C 1.50700 * 120.00181 * 359.97438 * 17 16 15 20 20 N 1.46493 * 109.47191 * 180.02562 * 19 17 16 21 21 C 1.35057 * 126.03723 * 125.00167 * 20 19 17 22 22 C 1.35373 * 107.72495 * 180.02562 * 21 20 19 23 23 Cl 1.73598 * 126.04222 * 180.02562 * 22 21 20 24 24 C 1.39930 * 107.91119 * 359.97438 * 22 21 20 25 25 N 1.30854 * 108.21219 * 359.72194 * 24 22 21 26 26 C 1.46748 * 117.57526 * 57.27928 * 16 15 14 27 27 C 1.46467 * 126.05892 * 180.02562 * 9 7 2 28 28 H 1.08996 * 107.86100 * 90.35206 * 27 9 7 29 29 H 0.97008 * 120.00585 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.90182 * 59.02312 * 10 9 7 31 31 H 1.08996 * 109.90788 * 297.77880 * 10 9 7 32 32 H 1.09004 * 110.78130 * 218.87513 * 11 10 9 33 33 H 1.08999 * 110.77779 * 95.43925 * 11 10 9 34 34 H 1.09001 * 109.25914 * 284.87063 * 14 12 11 35 35 H 1.09002 * 109.25571 * 44.31287 * 14 12 11 36 36 H 1.08999 * 109.76628 * 62.26710 * 15 14 12 37 37 H 1.08996 * 109.76507 * 183.02731 * 15 14 12 38 38 H 1.09003 * 109.46781 * 300.00575 * 19 17 16 39 39 H 1.08999 * 109.47325 * 60.00175 * 19 17 16 40 40 H 1.08000 * 126.13429 * 359.97438 * 21 20 19 41 41 H 1.08002 * 125.89208 * 179.97438 * 24 22 21 42 42 H 1.09008 * 109.22617 * 67.81204 * 26 16 15 43 43 H 1.09001 * 109.23132 * 187.20575 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2127 6 1 1.8912 2.3966 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1406 -2.5437 0.0007 11 6 -0.4377 -4.0593 -0.0406 12 6 0.8720 -4.6467 -0.6523 13 1 1.0151 -5.7006 -0.4135 14 6 0.7964 -4.3929 -2.1601 15 6 2.1697 -4.5770 -2.8051 16 7 3.1098 -3.6594 -2.1419 17 6 3.8027 -2.7414 -2.8444 18 8 4.5721 -1.9964 -2.2753 19 6 3.6223 -2.6414 -4.3373 20 7 4.4797 -1.5760 -4.8625 21 6 5.3965 -1.7059 -5.8456 22 6 5.9731 -0.4957 -6.0340 23 17 7.2171 -0.1253 -7.1869 24 6 5.3883 0.4041 -5.1360 25 7 4.4889 -0.2410 -4.4381 26 6 3.2655 -3.7806 -0.6877 27 6 1.9200 -3.7267 0.0016 28 1 2.0490 -4.0343 1.0392 29 1 -0.4851 0.8401 -0.0004 30 1 -0.5653 -2.0582 -0.8780 31 1 -0.5599 -2.1080 0.9075 32 1 -1.2926 -4.2685 -0.6837 33 1 -0.6038 -4.4483 0.9640 34 1 0.0920 -5.0939 -2.6079 35 1 0.4503 -3.3744 -2.3363 36 1 2.5041 -5.6060 -2.6729 37 1 2.1125 -4.3413 -3.8677 38 1 3.8960 -3.5893 -4.8006 39 1 2.5804 -2.4142 -4.5629 40 1 5.6286 -2.6128 -6.3841 41 1 5.6338 1.4514 -5.0389 42 1 3.7494 -4.7296 -0.4564 43 1 3.8875 -2.9628 -0.3238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042251421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:15 Heat of formation + Delta-G solvation = 85.009480 kcal Electronic energy + Delta-G solvation = -28364.435269 eV Core-core repulsion = 24473.806504 eV Total energy + Delta-G solvation = -3890.628766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.29081 -39.95962 -38.10127 -36.44046 -35.08287 -33.31834 -32.84968 -31.22621 -30.09956 -29.41602 -28.44185 -27.23482 -24.65435 -23.83700 -22.62713 -21.55464 -21.19132 -20.01469 -19.73305 -18.36376 -17.45875 -17.03155 -16.54666 -15.72876 -15.27715 -14.94700 -14.65375 -14.52224 -14.15428 -14.12542 -13.98788 -13.50763 -13.32491 -13.25225 -12.87673 -12.74986 -12.26888 -12.01348 -11.73573 -11.68383 -11.40825 -11.35448 -11.27932 -10.97297 -10.77066 -10.67073 -10.40873 -10.07212 -9.93260 -9.88334 -9.76075 -9.65750 -9.49471 -9.23572 -8.50956 -8.41276 -8.23343 -6.75449 -5.61952 -2.94132 1.70729 1.90709 2.68146 2.74449 2.86648 3.31753 3.52060 3.59339 3.66889 4.40738 4.55007 4.60067 4.63040 4.88380 4.97007 5.03116 5.05965 5.25699 5.42823 5.44653 5.48517 5.60321 5.61442 5.68967 5.71943 5.91039 5.95486 6.07760 6.19658 6.26953 6.39189 6.39672 6.41061 6.58141 6.66734 6.74010 6.87032 7.01759 7.61409 7.62554 7.64757 7.71788 7.93566 8.31822 8.50242 9.31634 9.92706 10.55442 11.50306 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.004157 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.976494 B = 6733.643770 C = 8364.806715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.277 1.277 5 H -0.292 1.292 6 H -0.295 1.295 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.589 5.589 10 C 0.178 3.822 11 C -0.144 4.144 12 C -0.101 4.101 13 H 0.076 0.924 14 C -0.124 4.124 15 C 0.109 3.891 16 N -0.593 5.593 17 C 0.508 3.492 18 O -0.504 6.504 19 C 0.118 3.882 20 N -0.350 5.350 21 C 0.067 3.933 22 C -0.185 4.185 23 Cl -0.051 7.051 24 C 0.052 3.948 25 N -0.233 5.233 26 C 0.116 3.884 27 C 0.154 3.846 28 H 0.027 0.973 29 H 0.248 0.752 30 H 0.044 0.956 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.117 0.883 40 H 0.181 0.819 41 H 0.189 0.811 42 H 0.055 0.945 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -12.061 -12.614 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.219 1.219 6 H -0.222 1.222 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.314 5.314 10 C 0.054 3.946 11 C -0.183 4.183 12 C -0.121 4.121 13 H 0.094 0.906 14 C -0.162 4.162 15 C -0.014 4.014 16 N -0.327 5.327 17 C 0.293 3.707 18 O -0.377 6.377 19 C -0.007 4.007 20 N -0.131 5.131 21 C -0.080 4.080 22 C -0.224 4.224 23 Cl -0.023 7.023 24 C -0.136 4.136 25 N -0.053 5.053 26 C -0.007 4.007 27 C 0.045 3.955 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.198 0.802 41 H 0.206 0.794 42 H 0.074 0.926 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.413 -11.391 -11.403 17.002 hybrid contribution 0.926 0.836 -0.762 1.461 sum 6.339 -10.555 -12.165 17.308 Atomic orbital electron populations 1.69964 1.04828 1.24657 1.58001 1.24666 0.95532 0.97458 1.02381 0.86109 0.79430 0.84060 0.76803 1.20200 1.21863 1.22219 1.19052 0.90545 0.81929 1.42547 0.90108 1.44315 1.01352 0.99232 1.86546 1.21214 0.84379 0.88189 1.00833 1.23176 0.96034 0.99788 0.99266 1.22363 0.97305 0.97751 0.94656 0.90607 1.21844 0.95368 1.03463 0.95553 1.21701 0.90256 0.93278 0.96184 1.47755 1.42090 1.34653 1.08239 1.20049 0.81691 0.80710 0.88293 1.90787 1.36460 1.40096 1.70344 1.21622 0.96071 0.88593 0.94416 1.47924 1.29799 1.07982 1.27444 1.22128 0.92885 0.99239 0.93790 1.20702 1.03215 0.94930 1.03506 1.98305 1.51424 1.94545 1.58041 1.23960 0.95088 1.00678 0.93859 1.77898 1.20592 0.87387 1.19430 1.21411 0.99126 1.01498 0.78632 1.20710 0.90996 0.87963 0.95827 0.95542 0.94140 0.93748 0.94122 0.92306 0.92720 0.91887 0.90016 0.91372 0.90894 0.86059 0.86502 0.80196 0.79409 0.92649 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.63 10.38 55.49 0.58 -27.06 16 2 C 0.00 -0.14 5.49 -17.43 -0.10 -0.24 16 3 Si 0.90 24.14 29.55 -169.99 -5.02 19.12 16 4 H -0.28 -7.50 7.11 56.52 0.40 -7.10 16 5 H -0.29 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 7 C -0.21 -5.95 9.70 -15.06 -0.15 -6.10 16 8 H 0.08 2.36 6.51 -52.49 -0.34 2.01 16 9 N -0.59 -14.29 3.20 -164.40 -0.53 -14.81 16 10 C 0.18 4.16 4.61 -2.74 -0.01 4.14 16 11 C -0.14 -2.49 6.33 -24.32 -0.15 -2.65 16 12 C -0.10 -1.54 3.68 -88.42 -0.33 -1.87 16 13 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.12 -1.70 5.04 -26.77 -0.13 -1.83 16 15 C 0.11 1.24 6.36 -3.77 -0.02 1.22 16 16 N -0.59 -9.34 2.97 -174.08 -0.52 -9.86 16 17 C 0.51 8.86 7.75 -10.98 -0.09 8.77 16 18 O -0.50 -11.34 15.18 5.56 0.08 -11.26 16 19 C 0.12 1.50 5.36 -5.20 -0.03 1.47 16 20 N -0.35 -5.23 3.40 -62.51 -0.21 -5.44 16 21 C 0.07 0.80 11.43 -17.15 -0.20 0.60 16 22 C -0.18 -2.43 6.65 -39.97 -0.27 -2.69 16 23 Cl -0.05 -0.57 29.30 -51.86 -1.52 -2.09 16 24 C 0.05 0.80 12.02 -17.33 -0.21 0.59 16 25 N -0.23 -4.35 11.66 30.64 0.36 -3.99 16 26 C 0.12 2.05 5.68 -4.77 -0.03 2.03 16 27 C 0.15 2.93 2.97 -68.28 -0.20 2.72 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.04 1.16 7.04 -51.93 -0.37 0.79 16 31 H 0.04 1.08 7.57 -51.93 -0.39 0.68 16 32 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 1.45 6.85 -51.93 -0.36 1.10 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.62 6.02 -51.93 -0.31 0.31 16 38 H 0.12 0.91 7.84 -51.93 -0.41 0.50 16 39 H 0.12 1.40 7.79 -51.93 -0.40 1.00 16 40 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 42 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 43 H 0.10 2.05 5.53 -51.93 -0.29 1.76 16 LS Contribution 356.41 15.07 5.37 5.37 Total: -1.00 -36.17 356.41 -9.11 -45.28 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.80 Total: -1.44 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: -1.91 Total: 6.18 kcal Atomic # 7 Polarization: -60.84 SS G_CDS: -0.32 Total: -61.16 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 24.14 SS G_CDS: -5.02 Total: 19.12 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.52 Total: -2.09 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.17 -9.11 -45.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042251421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.291 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds