Wall clock time and date at job start Tue Mar 31 2020 20:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 119.99794 * 2 1 4 4 H 1.48506 * 109.47262 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.46852 * 299.99125 * 3 2 1 6 6 H 1.48493 * 109.47514 * 59.99130 * 3 2 1 7 7 C 1.38809 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00250 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.47437 * 126.05802 * 359.96688 * 9 7 2 11 11 C 1.54507 * 107.14555 * 178.39884 * 10 9 7 12 12 C 1.56027 * 102.61230 * 337.15870 * 11 10 9 13 13 H 1.09001 * 112.85252 * 157.78538 * 12 11 10 14 14 C 1.53093 * 106.39522 * 281.61442 * 12 11 10 15 15 C 1.52836 * 110.56861 * 164.58609 * 14 12 11 16 16 N 1.47158 * 107.97741 * 302.65113 * 15 14 12 17 17 C 1.34781 * 121.21076 * 237.26435 * 16 15 14 18 18 O 1.21283 * 119.99793 * 180.02562 * 17 16 15 19 19 C 1.50700 * 120.00181 * 359.97438 * 17 16 15 20 20 N 1.46493 * 109.47191 * 180.02562 * 19 17 16 21 21 C 1.35057 * 126.03723 * 125.00167 * 20 19 17 22 22 C 1.35373 * 107.72495 * 180.02562 * 21 20 19 23 23 Cl 1.73598 * 126.04222 * 180.02562 * 22 21 20 24 24 C 1.39930 * 107.91119 * 359.97438 * 22 21 20 25 25 N 1.30854 * 108.21219 * 359.72194 * 24 22 21 26 26 C 1.46748 * 117.57526 * 57.27928 * 16 15 14 27 27 C 1.46467 * 126.05892 * 180.02562 * 9 7 2 28 28 H 1.08996 * 107.86100 * 90.35206 * 27 9 7 29 29 H 0.97008 * 120.00585 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.90182 * 59.02312 * 10 9 7 31 31 H 1.08996 * 109.90788 * 297.77880 * 10 9 7 32 32 H 1.09004 * 110.78130 * 218.87513 * 11 10 9 33 33 H 1.08999 * 110.77779 * 95.43925 * 11 10 9 34 34 H 1.09001 * 109.25914 * 284.87063 * 14 12 11 35 35 H 1.09002 * 109.25571 * 44.31287 * 14 12 11 36 36 H 1.08999 * 109.76628 * 62.26710 * 15 14 12 37 37 H 1.08996 * 109.76507 * 183.02731 * 15 14 12 38 38 H 1.09003 * 109.46781 * 300.00575 * 19 17 16 39 39 H 1.08999 * 109.47325 * 60.00175 * 19 17 16 40 40 H 1.08000 * 126.13429 * 359.97438 * 21 20 19 41 41 H 1.08002 * 125.89208 * 179.97438 * 24 22 21 42 42 H 1.09008 * 109.22617 * 67.81204 * 26 16 15 43 43 H 1.09001 * 109.23132 * 187.20575 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2127 6 1 1.8912 2.3966 1.2123 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1406 -2.5437 0.0007 11 6 -0.4377 -4.0593 -0.0406 12 6 0.8720 -4.6467 -0.6523 13 1 1.0151 -5.7006 -0.4135 14 6 0.7964 -4.3929 -2.1601 15 6 2.1697 -4.5770 -2.8051 16 7 3.1098 -3.6594 -2.1419 17 6 3.8027 -2.7414 -2.8444 18 8 4.5721 -1.9964 -2.2753 19 6 3.6223 -2.6414 -4.3373 20 7 4.4797 -1.5760 -4.8625 21 6 5.3965 -1.7059 -5.8456 22 6 5.9731 -0.4957 -6.0340 23 17 7.2171 -0.1253 -7.1869 24 6 5.3883 0.4041 -5.1360 25 7 4.4889 -0.2410 -4.4381 26 6 3.2655 -3.7806 -0.6877 27 6 1.9200 -3.7267 0.0016 28 1 2.0490 -4.0343 1.0392 29 1 -0.4851 0.8401 -0.0004 30 1 -0.5653 -2.0582 -0.8780 31 1 -0.5599 -2.1080 0.9075 32 1 -1.2926 -4.2685 -0.6837 33 1 -0.6038 -4.4483 0.9640 34 1 0.0920 -5.0939 -2.6079 35 1 0.4503 -3.3744 -2.3363 36 1 2.5041 -5.6060 -2.6729 37 1 2.1125 -4.3413 -3.8677 38 1 3.8960 -3.5893 -4.8006 39 1 2.5804 -2.4142 -4.5629 40 1 5.6286 -2.6128 -6.3841 41 1 5.6338 1.4514 -5.0389 42 1 3.7494 -4.7296 -0.4564 43 1 3.8875 -2.9628 -0.3238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042251421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:14 Heat of formation + Delta-G solvation = 59.483862 kcal Electronic energy + Delta-G solvation = -28365.542143 eV Core-core repulsion = 24473.806504 eV Total energy + Delta-G solvation = -3891.735640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 338.125 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.35124 -41.26600 -39.54650 -37.36518 -36.54562 -34.67477 -34.40958 -32.81337 -31.27694 -30.78036 -30.05975 -28.39901 -26.50374 -25.30447 -23.86612 -22.71812 -22.19103 -21.74271 -21.03095 -19.72632 -18.57402 -18.38553 -18.19796 -16.99594 -16.81344 -16.39739 -16.08514 -15.80229 -15.70793 -15.36196 -15.21958 -15.00520 -14.50488 -14.30491 -14.15208 -14.04919 -13.78897 -13.40569 -13.15871 -13.09111 -12.98180 -12.68866 -12.68231 -12.53485 -12.32218 -12.30774 -12.06608 -11.68592 -11.44740 -11.38836 -11.27289 -11.15737 -10.96939 -10.69404 -10.43866 -9.49092 -9.42209 -8.81099 -7.87251 -5.15541 0.71419 0.96549 1.29736 1.34444 1.45214 1.60998 1.63038 1.76143 2.17643 2.44977 3.32672 3.38467 3.58231 3.64495 3.81158 3.88224 3.94232 4.01744 4.08757 4.14128 4.31800 4.45220 4.51316 4.53675 4.60680 4.64963 4.68726 4.74929 4.87789 4.93378 5.04797 5.16651 5.18488 5.31623 5.34465 5.52745 5.66435 5.68339 5.74085 5.82112 5.84765 6.21981 6.53601 6.55543 7.14257 7.27126 7.82640 8.44182 9.23444 Molecular weight = 338.13amu Principal moments of inertia in cm(-1) A = 0.012464 B = 0.004157 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.976494 B = 6733.643770 C = 8364.806715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.058 4.058 3 Si 0.949 3.051 4 H -0.289 1.289 5 H -0.298 1.298 6 H -0.288 1.288 7 C -0.194 4.194 8 H 0.061 0.939 9 N -0.605 5.605 10 C 0.186 3.814 11 C -0.131 4.131 12 C -0.082 4.082 13 H 0.126 0.874 14 C -0.123 4.123 15 C 0.105 3.895 16 N -0.593 5.593 17 C 0.493 3.507 18 O -0.570 6.570 19 C 0.120 3.880 20 N -0.358 5.358 21 C 0.088 3.912 22 C -0.200 4.200 23 Cl -0.035 7.035 24 C 0.043 3.957 25 N -0.310 5.310 26 C 0.121 3.879 27 C 0.141 3.859 28 H 0.022 0.978 29 H 0.241 0.759 30 H 0.007 0.993 31 H -0.006 1.006 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.106 0.894 35 H 0.031 0.969 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.187 0.813 39 H 0.123 0.877 40 H 0.232 0.768 41 H 0.195 0.805 42 H 0.096 0.904 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -16.722 -15.143 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.251 4.251 3 Si 0.781 3.219 4 H -0.215 1.215 5 H -0.226 1.226 6 H -0.215 1.215 7 C -0.324 4.324 8 H 0.079 0.921 9 N -0.330 5.330 10 C 0.061 3.939 11 C -0.169 4.169 12 C -0.102 4.102 13 H 0.143 0.857 14 C -0.161 4.161 15 C -0.016 4.016 16 N -0.326 5.326 17 C 0.280 3.720 18 O -0.449 6.449 19 C -0.003 4.003 20 N -0.140 5.140 21 C -0.059 4.059 22 C -0.238 4.238 23 Cl -0.007 7.007 24 C -0.144 4.144 25 N -0.130 5.130 26 C -0.003 4.003 27 C 0.034 3.966 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.025 0.975 31 H 0.013 0.987 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.050 0.950 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.204 0.796 39 H 0.141 0.859 40 H 0.249 0.751 41 H 0.212 0.788 42 H 0.114 0.886 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.685 -16.111 -13.941 22.051 hybrid contribution 0.903 2.216 0.047 2.394 sum 6.588 -13.895 -13.894 20.725 Atomic orbital electron populations 1.70124 1.05349 1.24273 1.60080 1.25157 0.96193 0.99491 1.04245 0.85413 0.77751 0.82159 0.76568 1.21456 1.22558 1.21498 1.19003 0.89860 0.83764 1.39771 0.92065 1.44481 1.02191 1.00358 1.86014 1.20968 0.83519 0.92561 0.96863 1.23041 0.98318 0.94607 1.00920 1.22423 0.93355 0.98984 0.95391 0.85658 1.21839 0.97889 1.01676 0.94713 1.22135 0.87582 0.94403 0.97496 1.47949 1.42353 1.34917 1.07422 1.20993 0.80802 0.79748 0.90433 1.90761 1.39471 1.42550 1.72072 1.21925 0.96494 0.90736 0.91161 1.48094 1.30715 1.07144 1.28011 1.22910 0.90482 1.00380 0.92092 1.20822 1.04046 0.95095 1.03851 1.98306 1.50641 1.94565 1.57225 1.24239 0.94754 1.01470 0.93918 1.77797 1.23135 0.89999 1.22116 1.21197 0.97373 1.01467 0.80265 1.21050 0.93066 0.86050 0.96450 0.96010 0.94910 0.97452 0.98730 0.89852 0.91659 0.87577 0.95013 0.86940 0.87384 0.79619 0.85906 0.75141 0.78778 0.88562 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.82 10.38 21.65 0.22 -59.59 16 2 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 3 Si 0.95 52.75 29.55 68.60 2.03 54.78 16 4 H -0.29 -16.40 7.11 99.48 0.71 -15.69 16 5 H -0.30 -16.70 7.11 99.48 0.71 -15.99 16 6 H -0.29 -15.48 7.11 99.48 0.71 -14.78 16 7 C -0.19 -11.48 9.70 84.03 0.81 -10.67 16 8 H 0.06 3.84 6.51 -2.91 -0.02 3.82 16 9 N -0.61 -30.35 3.20 -674.03 -2.15 -32.51 16 10 C 0.19 8.95 4.61 86.71 0.40 9.35 16 11 C -0.13 -4.21 6.33 32.16 0.20 -4.01 16 12 C -0.08 -2.16 3.68 -9.37 -0.03 -2.20 16 13 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.12 -2.80 5.04 30.57 0.15 -2.64 16 15 C 0.10 1.79 6.36 86.20 0.55 2.33 16 16 N -0.59 -17.27 2.97 -823.07 -2.44 -19.71 16 17 C 0.49 16.77 7.75 87.66 0.68 17.45 16 18 O -0.57 -26.76 15.18 -3.04 -0.05 -26.80 16 19 C 0.12 2.70 5.36 85.63 0.46 3.16 16 20 N -0.36 -10.18 3.40 -351.67 -1.19 -11.38 16 21 C 0.09 1.86 11.43 83.53 0.95 2.81 16 22 C -0.20 -4.99 6.65 22.02 0.15 -4.85 16 23 Cl -0.04 -0.73 29.30 -2.72 -0.08 -0.81 16 24 C 0.04 1.37 12.02 85.25 1.02 2.39 16 25 N -0.31 -11.94 11.66 -56.97 -0.66 -12.61 16 26 C 0.12 4.13 5.68 85.77 0.49 4.62 16 27 C 0.14 5.21 2.97 44.78 0.13 5.34 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.24 15.01 8.31 -92.70 -0.77 14.24 16 30 H 0.01 0.40 7.04 -2.39 -0.02 0.38 16 31 H -0.01 -0.31 7.57 -2.39 -0.02 -0.33 16 32 H 0.08 2.31 7.97 -2.39 -0.02 2.29 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.03 1.06 6.85 -2.39 -0.02 1.04 16 36 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.13 6.02 -2.39 -0.01 1.11 16 38 H 0.19 1.60 7.84 -2.39 -0.02 1.58 16 39 H 0.12 2.62 7.79 -2.39 -0.02 2.60 16 40 H 0.23 2.21 8.06 -2.91 -0.02 2.19 16 41 H 0.20 5.34 8.06 -2.91 -0.02 5.32 16 42 H 0.10 2.49 8.14 -2.38 -0.02 2.47 16 43 H 0.04 1.97 5.53 -2.39 -0.01 1.95 16 Total: -1.00 -91.93 356.41 3.14 -88.79 By element: Atomic # 1 Polarization: -1.16 SS G_CDS: 1.03 Total: -0.13 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.44 Total: 19.97 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -6.23 Total: -135.80 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 52.75 SS G_CDS: 2.03 Total: 54.78 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -91.93 3.14 -88.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042251421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.275 kcal (2) G-P(sol) polarization free energy of solvation -91.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.791 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds